ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet70b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY110901.1| Zea mays CL7341_1 mRNA sequence 155 1e-34
2dbj|AK060099.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 7e-30
3ref|NM_188391.1| Oryza sativa (japonica cultivar-group), Ozsa811... 131 2e-27
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
6dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
7dbj|AK119774.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
8gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4... 44 0.33
9gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 44 0.33
10gb|CP000114.1| Streptococcus agalactiae A909, complete genome 44 0.33
11gb|AF507073.2| Trypanosoma brucei vacuolar-type Ca2+-ATPase gene... 44 0.33
12gb|AF359561.1| Trypanosoma brucei vacuolar-type Ca2+-ATPase (TbA... 44 0.33
13gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence 44 0.33
14gb|AE014219.1| Streptococcus agalactiae 2603V/R section 29 of 10... 44 0.33
15emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete ... 44 0.33
16emb|BX640435.1| Bordetella parapertussis strain 12822, complete ... 44 0.33
17emb|BX640412.1| Bordetella pertussis strain Tohama I, complete g... 44 0.33
18emb|AL766846.1|SAG766846 Streptococcus agalactiae NEM316 complet... 44 0.33
19gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome 42 1.3
20gb|AC016687.5| Homo sapiens BAC clone RP11-79E3 from 4, complete... 42 1.3
21gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
22gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 5.1
23gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
24gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome... 40 5.1
25ref|XM_724269.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.1
26gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
27gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 geno... 40 5.1
28gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 geno... 40 5.1
29emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4,... 40 5.1
30emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4,... 40 5.1
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
33dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
34dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
35dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
37dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
38dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
39dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
40dbj|AK119742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
41dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
42emb|BX957244.15| Zebrafish DNA sequence from clone CH211-13C6 in... 40 5.1
43gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, co... 40 5.1
44gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
45gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.1
46emb|BX005329.9| Zebrafish DNA sequence from clone DKEY-222F2, co... 40 5.1
47emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chr... 40 5.1 
>gb|AY110901.1| Zea mays CL7341_1 mRNA sequence
          Length = 746

 Score =  155 bits (78), Expect = 1e-34
 Identities = 102/110 (92%)
 Strand = Plus / Minus

                                                                       
Query: 276 cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtctcgaaggtgatcttgg 335
           ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 446 cgaaggcggagacggggtaggtcctgccgagcccggtgggcgtcttgaaggtgatcttgg 387

                                                             
Query: 336 aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgagg 385
           ||||||||||| |||||| |||||||||| |||| |||| ||||||||||
Sbjct: 386 aggggtcgtccctgtcgacgaacatgtcggagagggtgacccagatgagg 337
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>dbj|AK060099.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-H01, full
           insert sequence
          Length = 957

 Score =  139 bits (70), Expect = 7e-30
 Identities = 100/110 (90%)
 Strand = Plus / Minus

                                                                       
Query: 276 cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtctcgaaggtgatcttgg 335
           ||||||||  ||||||| ||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 505 cgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttgaaggtgatcttgg 446

                                                             
Query: 336 aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgagg 385
           ||||||||||||||||||||||||||||| |||| | || ||||||||||
Sbjct: 445 aggggtcgtccttgtcgatgaacatgtcggagagggagacccagatgagg 396
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>ref|NM_188391.1| Oryza sativa (japonica cultivar-group), Ozsa8117 predicted mRNA
          Length = 504

 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Minus

                                                                       
Query: 276 cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtctcgaaggtgatcttgg 335
           ||||||||  ||||||| ||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 415 cgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttgaaggtgatcttgg 356

                                                             
Query: 336 aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgagg 385
           ||| ||||||||||||||||||||||||| |||| | || ||||||||||
Sbjct: 355 aggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatgagg 306
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                           
Query: 276     cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtctcgaaggtgatcttgg 335
               ||||||||  ||||||| ||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 6010314 cgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttgaaggtgatcttgg 6010373

                                                                 
Query: 336     aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgagg 385
               ||| ||||||||||||||||||||||||| |||| | || ||||||||||
Sbjct: 6010374 aggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatgagg 6010423
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>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0466B10
          Length = 151806

 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                         
Query: 276   cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtctcgaaggtgatcttgg 335
             ||||||||  ||||||| ||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 78202 cgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttgaaggtgatcttgg 78261

                                                               
Query: 336   aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgagg 385
             ||| ||||||||||||||||||||||||| |||| | || ||||||||||
Sbjct: 78262 aggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatgagg 78311
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>dbj|AP002092.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0031E09
          Length = 176349

 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Plus

                                                                         
Query: 276   cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtctcgaaggtgatcttgg 335
             ||||||||  ||||||| ||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 34671 cgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttgaaggtgatcttgg 34730

                                                               
Query: 336   aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgagg 385
             ||| ||||||||||||||||||||||||| |||| | || ||||||||||
Sbjct: 34731 aggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatgagg 34780
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>dbj|AK119774.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-172-F06, full
           insert sequence
          Length = 787

 Score =  131 bits (66), Expect = 2e-27
 Identities = 99/110 (90%)
 Strand = Plus / Minus

                                                                       
Query: 276 cgaaggcggagacggggaaggtcctcccgagcccggtgggcgtctcgaaggtgatcttgg 335
           ||||||||  ||||||| ||||||||||||| |||||||| |||| ||||||||||||||
Sbjct: 507 cgaaggcgtcgacggggtaggtcctcccgaggccggtgggggtcttgaaggtgatcttgg 448

                                                             
Query: 336 aggggtcgtccttgtcgatgaacatgtcgcagagcgtgatccagatgagg 385
           ||| ||||||||||||||||||||||||| |||| | || ||||||||||
Sbjct: 447 aggcgtcgtccttgtcgatgaacatgtcggagagggagacccagatgagg 398
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>gb|AC159438.1| Trypanosoma brucei chromosome 8 clone RPCI93-29O4, complete sequence
          Length = 138187

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 151   ggactcgagaactcttcatccaatccaaac 180
             ||||| ||||||||||||||| ||||||||
Sbjct: 64167 ggactggagaactcttcatccgatccaaac 64196



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 151   ggactcgagaactcttcatccaatccaaac 180
             ||||| ||||||||||||||| ||||||||
Sbjct: 58033 ggactggagaactcttcatccgatccaaac 58062
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 151    ggactcgagaactcttcatccaatccaaac 180
              ||||| ||||||||||||||| ||||||||
Sbjct: 381620 ggactggagaactcttcatccgatccaaac 381649



 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 151    ggactcgagaactcttcatccaatccaaac 180
              ||||| ||||||||||||||| ||||||||
Sbjct: 375486 ggactggagaactcttcatccgatccaaac 375515
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 6      gataataaaactatataaacat 27
              ||||||||||||||||||||||
Sbjct: 630581 gataataaaactatataaacat 630602
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>gb|AF507073.2| Trypanosoma brucei vacuolar-type Ca2+-ATPase gene, complete cds
          Length = 15626

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 151   ggactcgagaactcttcatccaatccaaac 180
             ||||| ||||||||||||||| ||||||||
Sbjct: 15561 ggactggagaactcttcatccgatccaaac 15532
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>gb|AF359561.1| Trypanosoma brucei vacuolar-type Ca2+-ATPase (TbA1) gene, complete
            cds
          Length = 5430

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 151  ggactcgagaactcttcatccaatccaaac 180
            ||||| ||||||||||||||| ||||||||
Sbjct: 5365 ggactggagaactcttcatccgatccaaac 5336
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>gb|CP000318.1| Polaromonas sp. JS666 plasmid 2, complete sequence
          Length = 338007

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 239    gcagctgcggccgtagccttgg 260
              ||||||||||||||||||||||
Sbjct: 102309 gcagctgcggccgtagccttgg 102330
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>gb|AE014219.1| Streptococcus agalactiae 2603V/R section 29 of 100 of the complete
            genome
          Length = 22690

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 6    gataataaaactatataaacat 27
            ||||||||||||||||||||||
Sbjct: 1747 gataataaaactatataaacat 1768
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>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16
          Length = 346287

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 219    cgacggcctccttgccgccggc 240
              ||||||||||||||||||||||
Sbjct: 293549 cgacggcctccttgccgccggc 293528
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>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14
          Length = 346259

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 219    cgacggcctccttgccgccggc 240
              ||||||||||||||||||||||
Sbjct: 212435 cgacggcctccttgccgccggc 212414
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>emb|BX640412.1| Bordetella pertussis strain Tohama I, complete genome; segment 2/12
          Length = 348171

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 219   cgacggcctccttgccgccggc 240
             ||||||||||||||||||||||
Sbjct: 36268 cgacggcctccttgccgccggc 36289
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>emb|AL766846.1|SAG766846 Streptococcus agalactiae NEM316 complete genome, segment 4
          Length = 224050

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 6     gataataaaactatataaacat 27
             ||||||||||||||||||||||
Sbjct: 54568 gataataaaactatataaacat 54589
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>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome
          Length = 1928252

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 7       ataataaaactatataaacat 27
               |||||||||||||||||||||
Sbjct: 1692825 ataataaaactatataaacat 1692805
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>gb|AC016687.5| Homo sapiens BAC clone RP11-79E3 from 4, complete sequence
          Length = 162371

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     ataataaaactatataaacat 27
             |||||||||||||||||||||
Sbjct: 19704 ataataaaactatataaacat 19684
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>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
             complete sequence
          Length = 117724

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 18259 aaaactatataaaaatcatatgaa 18236
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 321    cgaaggtgatcttggagggg 340
              ||||||||||||||||||||
Sbjct: 539405 cgaaggtgatcttggagggg 539386
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>gb|AC104277.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1264_A04,
             complete sequence
          Length = 133271

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 73913 aaaactatataaaaatcatatgaa 73936
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>gb|AC121871.3| Mus musculus BAC clone RP24-121J1 from chromosome 10, complete sequence
          Length = 214405

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 150    tggactcgagaactcttcat 169
              ||||||||||||||||||||
Sbjct: 112329 tggactcgagaactcttcat 112310
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>ref|XM_724269.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01580)
            partial mRNA
          Length = 4593

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 111  aaacagattatagaagatagtaat 134
            ||||||| ||||||||||||||||
Sbjct: 4243 aaacagaatatagaagatagtaat 4266
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>gb|AC109929.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0093J03, complete sequence
          Length = 200626

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 50336 aaaactatataaaaatcatatgaa 50313
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>gb|AC091680.7| Oryza sativa chromosome 10 BAC OSJNBa0034L04 genomic sequence, complete
             sequence
          Length = 148611

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 27929 aaaactatataaaaatcatatgaa 27906
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>gb|AC113948.5| Oryza sativa chromosome 10 BAC OSJNBb0038A07 genomic sequence, complete
             sequence
          Length = 132900

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 86230 aaaactatataaaaatcatatgaa 86207
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>emb|AL606624.4|OSJN00058 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011J08,
              complete sequence
          Length = 157734

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     aaaactatataaacatcatatgaa 35
              ||||||||||||| ||||||||||
Sbjct: 150805 aaaactatataaaaatcatatgaa 150782
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>emb|AL606688.3|OSJN00086 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23,
             complete sequence
          Length = 149892

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 44392 aaaactatataaaaatcatatgaa 44369
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 12       aaaactatataaacatcatatgaa 35
                ||||||||||||| ||||||||||
Sbjct: 29241346 aaaactatataaaaatcatatgaa 29241323
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 12       aaaactatataaacatcatatgaa 35
                ||||||||||||| ||||||||||
Sbjct: 20743275 aaaactatataaaaatcatatgaa 20743252
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 12       aaaactatataaacatcatatgaa 35
                ||||||||||||| ||||||||||
Sbjct: 20080261 aaaactatataaaaatcatatgaa 20080284
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 12      aaaactatataaacatcatatgaa 35
               ||||||||||||| ||||||||||
Sbjct: 8666753 aaaactatataaaaatcatatgaa 8666730
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 12       aaaactatataaacatcatatgaa 35
                ||||||||||||| ||||||||||
Sbjct: 26472091 aaaactatataaaaatcatatgaa 26472114



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 12      aaaactatataaacatcatatgaa 35
               ||||||||||||| ||||||||||
Sbjct: 8491279 aaaactatataaaaatcatatgaa 8491256
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 12       aaaactatataaacatcatatgaa 35
                ||||||||||||| ||||||||||
Sbjct: 14289473 aaaactatataaaaatcatatgaa 14289450



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 12      aaaactatataaacatcatatgaa 35
               ||||||||||||| ||||||||||
Sbjct: 2398313 aaaactatataaaaatcatatgaa 2398336
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>dbj|AP005292.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1340_C08
          Length = 192167

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 17362 aaaactatataaaaatcatatgaa 17385
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>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0057D11
          Length = 190790

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 96549 aaaactatataaaaatcatatgaa 96526
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>dbj|AP005824.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0669H03
          Length = 167878

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 12    aaaactatataaacatcatatgaa 35
             ||||||||||||| ||||||||||
Sbjct: 23747 aaaactatataaaaatcatatgaa 23724
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>dbj|AK119742.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-G05, full
           insert sequence
          Length = 3764

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 345 ccttgtcgatgaacatgtcg 364
           ||||||||||||||||||||
Sbjct: 408 ccttgtcgatgaacatgtcg 389
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>dbj|AP005178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0056I06
          Length = 138653

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 12     aaaactatataaacatcatatgaa 35
              ||||||||||||| ||||||||||
Sbjct: 122872 aaaactatataaaaatcatatgaa 122849
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>emb|BX957244.15| Zebrafish DNA sequence from clone CH211-13C6 in linkage group 19,
              complete sequence
          Length = 162321

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 11     taaaactatataaacatcat 30
              ||||||||||||||||||||
Sbjct: 137781 taaaactatataaacatcat 137800
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>gb|AC110192.14| Mus musculus chromosome 7, clone RP23-227K15, complete sequence
          Length = 181287

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     taataaaactatataaacat 27
             ||||||||||||||||||||
Sbjct: 40305 taataaaactatataaacat 40324
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 12       aaaactatataaacatcatatgaa 35
                ||||||||||||| ||||||||||
Sbjct: 20091537 aaaactatataaaaatcatatgaa 20091560
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 12       aaaactatataaacatcatatgaa 35
                ||||||||||||| ||||||||||
Sbjct: 21053510 aaaactatataaaaatcatatgaa 21053487
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>emb|BX005329.9| Zebrafish DNA sequence from clone DKEY-222F2, complete sequence
          Length = 186928

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     aataaaactatataaacatc 28
             ||||||||||||||||||||
Sbjct: 14563 aataaaactatataaacatc 14582
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>emb|AL844901.8| Mouse DNA sequence from clone RP23-158F12 on chromosome 2, complete
             sequence
          Length = 200364

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    taaaactatataaacatcat 30
             ||||||||||||||||||||
Sbjct: 51887 taaaactatataaacatcat 51906


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,709,584
Number of Sequences: 3902068
Number of extensions: 2709584
Number of successful extensions: 52592
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52268
Number of HSP's gapped (non-prelim): 324
length of query: 385
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 363
effective length of database: 17,147,199,772
effective search space: 6224433517236
effective search space used: 6224433517236
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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