Clone Information

BLAST Search Result

Clone Name	rbaet69g02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY104624.1\| Zea mays PCO140637 mRNA sequence	135	1e-28
2	ref\|NM_183682.1\| Oryza sativa (japonica cultivar-group), predic...	127	3e-26
3	dbj\|AP004253.3\| Oryza sativa (japonica cultivar-group) genomic D...	127	3e-26
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	127	3e-26
5	dbj\|AP007204.2\| Oryza sativa (japonica cultivar-group) genomic D...	127	3e-26
6	dbj\|AP003934.4\| Oryza sativa (japonica cultivar-group) genomic D...	127	3e-26
7	dbj\|AK100627.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	127	3e-26
8	gb\|AC002307.1\|HUAC002307 Homo sapiens Chromosome 16 BAC clone CI...	44	0.37
9	emb\|BX322784.3\| Human DNA sequence from clone RP11-3D23 on chrom...	44	0.37
10	emb\|BX322613.6\| Human DNA sequence from clone RP11-745D9 on chro...	44	0.37
11	gb\|AC133916.2\| Homo sapiens chromosome 16 clone RP11-135K11, com...	44	0.37
12	gb\|AC141070.2\| Homo sapiens chromosome 16 clone RP11-171B13, com...	44	0.37
13	gb\|AC138915.2\| Homo sapiens chromosome 16 clone RP11-626K17, com...	44	0.37
14	gb\|AC137800.3\| Homo sapiens chromosome 16 clone RP11-652G5, comp...	44	0.37
15	gb\|AC011239.5\| Homo sapiens BAC clone RP11-414D15 from 2, comple...	44	0.37
16	gb\|AC026131.4\| Homo sapiens chromosome 11, clone RP11-458M15, co...	44	0.37
17	gb\|AC139109.1\| Homo sapiens chromosome 5 clone RP11-887F16, comp...	44	0.37
18	gb\|AC136612.2\| Homo sapiens chromosome 16 clone RP11-319D11, com...	44	0.37
19	gb\|AC027354.3\| Homo sapiens chromosome 16 clone RP11-179H7, comp...	44	0.37
20	gb\|AC136625.2\| Homo sapiens chromosome 16 clone RP11-554I17, com...	44	0.37
21	gb\|AC136437.2\| Homo sapiens chromosome 16 clone RP11-347D23, com...	44	0.37
22	ref\|NM_117700.2\| Arabidopsis thaliana triacylglycerol lipase AT4...	42	1.5
23	ref\|XM_652115.1\| Entamoeba histolytica HM-1:IMSS ATP-dependent c...	42	1.5
24	gb\|AC118681.6\| Mus musculus chromosome 16, clone RP23-473M11, co...	42	1.5
25	emb\|Z97340.2\|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA ...	42	1.5
26	emb\|AL161543.2\|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, ...	42	1.5
27	gb\|AC105226.4\| Homo sapiens chromosome 8, clone RP11-970F14, com...	42	1.5
28	gb\|AY093277.1\| Arabidopsis thaliana unknown protein (Z97340.15) ...	42	1.5
29	gb\|AY062490.1\| Arabidopsis thaliana Unknown protein (Z97340.15) ...	42	1.5
30	gb\|AC007380.3\| Homo sapiens BAC clone RP11-150O13 from 2, comple...	42	1.5
31	gb\|AC118650.5\| Homo sapiens chromosome 8, clone CTD-2326I15, com...	42	1.5
32	emb\|BX004817.8\| Zebrafish DNA sequence from clone DKEY-169B7, co...	42	1.5
33	emb\|AL645928.9\| Mouse DNA sequence from clone RP23-185J21 on chr...	42	1.5
34	gb\|AC109298.19\| Mus musculus chromosome 3, clone RP24-271A4, com...	40	5.8
35	gb\|AC135419.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	5.8
36	gb\|AC175749.2\| Pan troglodytes BAC clone CH251-1124N9 from chrom...	40	5.8
37	emb\|CR450764.3\| Zebrafish DNA sequence from clone CH211-209F22 i...	40	5.8
38	ref\|XM_763636.1\| Giardia lamblia ATCC 50803 hypothetical protein...	40	5.8
39	gb\|AC004870.2\| Homo sapiens PAC clone RP4-739M23 from 7, complet...	40	5.8
40	emb\|CR749176.14\| Zebrafish DNA sequence from clone DKEY-43B13 in...	40	5.8
41	emb\|AL591645.35\| Human DNA sequence from clone RP13-971O21 on ch...	40	5.8
42	emb\|AL603789.3\| Human DNA sequence from clone RP11-415G4 on chro...	40	5.8
43	ref\|XM_783606.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	5.8
44	emb\|BX842642.1\| Mycoplasma mycoides subsp. mycoides SC genomic D...	40	5.8
45	emb\|AL691468.12\| Mouse DNA sequence from clone RP23-20K13 on chr...	40	5.8
46	gb\|AC020654.23\| Homo sapiens 12 BAC RP11-496H24 (Roswell Park Ca...	40	5.8
47	emb\|CR384108.7\| Zebrafish DNA sequence from clone DKEYP-26H11 in...	40	5.8
48	gb\|AC148826.4\| Pan troglodytes BAC clone CH251-484F13 from chrom...	40	5.8
49	gb\|AE016819.2\| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	5.8
50	gb\|AC148318.3\| Pan troglodytes BAC clone CH251-496K6 from chromo...	40	5.8
51	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
52	gb\|AC073485.3\| Homo sapiens BAC clone RP11-798J16 from 2, comple...	40	5.8
53	gb\|AF323588.1\|AF323588 Manduca sexta sensory neuron membrane pro...	40	5.8
54	gb\|AC154845.2\| Mus musculus BAC clone RP23-48E18 from chromosome...	40	5.8
55	emb\|AL935324.8\| Zebrafish DNA sequence from clone CH211-197B6 in...	40	5.8
56	gb\|AC004534.1\|AC004534 Homo sapiens PAC clone RP4-545C24 from 7q...	40	5.8
57	ref\|NM_211022.1\| Eremothecium gossypii AFR121Wp (AFR121W), mRNA	40	5.8
58	emb\|BX649245.16\| Zebrafish DNA sequence from clone CH211-213C4 i...	40	5.8
59	emb\|Z72902.1\|SCYGR117C S.cerevisiae chromosome VII reading frame...	40	5.8
60	emb\|Z72899.1\|SCYGR114C S.cerevisiae chromosome VII reading frame...	40	5.8
61	gb\|DQ332626.1\| Synthetic construct Saccharomyces cerevisiae clon...	40	5.8
62	gb\|M34391.1\|YSCSPT6A S.cerevisiae SPT6 gene	40	5.8

>gb|AY104624.1| Zea mays PCO140637 mRNA sequence
          Length = 1356

 Score =  135 bits (68), Expect = 1e-28
 Identities = 107/120 (89%)
 Strand = Plus / Minus

                                                                        
Query: 282  aacttctcaatcaatatttccatcattttcttgtacattggcatataatggtcattgatc 341
            ||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 1069 aacttctcaatcaatgtttccatcattttcttatacattggcatgtagtggtcattgatc 1010

                                                                        
Query: 342  atggtattagatagtcggatcttgctgtaaagatgtctcggtgtcccgtataatccaaca 401
            |||||||| || ||||| |||||||||||||||| ||| || ||| | |||| |||||||
Sbjct: 1009 atggtatttgagagtcgaatcttgctgtaaagatctctaggggtctcatatattccaaca 950

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>ref|NM_183682.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1908

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                        
Query: 267  tcatcgttgtttgcaaacttctcaatcaatatttccatcattttcttgtacattggcata 326
            ||||| ||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||| 
Sbjct: 1877 tcatcattgttcgcaaacttctcaatcaatatttccattgttttcttatacatcggcatg 1818

                                                                        
Query: 327  taatggtcattgatcatggtattagatagtcggatcttgctgtaaagatgtctcggtgtc 386
            |||||||||||||||||||| || ||||| ||||| || ||||||||||  || || |||
Sbjct: 1817 taatggtcattgatcatggtgttggatagacggattttactgtaaagatcccttggggtc 1758

                                        
Query: 387  ccgtataatccaacagtacactcatcag 414
             |||||| ||| ||| | ||||||||||
Sbjct: 1757 tcgtatattcccacactgcactcatcag 1730

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>dbj|AP004253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1116_C07
          Length = 108208

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                         
Query: 267   tcatcgttgtttgcaaacttctcaatcaatatttccatcattttcttgtacattggcata 326
             ||||| ||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||| 
Sbjct: 58957 tcatcattgttcgcaaacttctcaatcaatatttccattgttttcttatacatcggcatg 58898

                                                                         
Query: 327   taatggtcattgatcatggtattagatagtcggatcttgctgtaaagatgtctcggtgtc 386
             |||||||||||||||||||| || ||||| ||||| || ||||||||||  || || |||
Sbjct: 58897 taatggtcattgatcatggtgttggatagacggattttactgtaaagatcccttggggtc 58838

                                         
Query: 387   ccgtataatccaacagtacactcatcag 414
              |||||| ||| ||| | ||||||||||
Sbjct: 58837 tcgtatattcccacactgcactcatcag 58810

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                            
Query: 267      tcatcgttgtttgcaaacttctcaatcaatatttccatcattttcttgtacattggcata 326
                ||||| ||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||| 
Sbjct: 11605161 tcatcattgttcgcaaacttctcaatcaatatttccattgttttcttatacatcggcatg 11605102

                                                                            
Query: 327      taatggtcattgatcatggtattagatagtcggatcttgctgtaaagatgtctcggtgtc 386
                |||||||||||||||||||| || ||||| ||||| || ||||||||||  || || |||
Sbjct: 11605101 taatggtcattgatcatggtgttggatagacggattttactgtaaagatcccttggggtc 11605042

                                            
Query: 387      ccgtataatccaacagtacactcatcag 414
                 |||||| ||| ||| | ||||||||||
Sbjct: 11605041 tcgtatattcccacactgcactcatcag 11605014

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>dbj|AP007204.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0008D05
          Length = 134776

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                          
Query: 267    tcatcgttgtttgcaaacttctcaatcaatatttccatcattttcttgtacattggcata 326
              ||||| ||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||| 
Sbjct: 112168 tcatcattgttcgcaaacttctcaatcaatatttccattgttttcttatacatcggcatg 112109

                                                                          
Query: 327    taatggtcattgatcatggtattagatagtcggatcttgctgtaaagatgtctcggtgtc 386
              |||||||||||||||||||| || ||||| ||||| || ||||||||||  || || |||
Sbjct: 112108 taatggtcattgatcatggtgttggatagacggattttactgtaaagatcccttggggtc 112049

                                          
Query: 387    ccgtataatccaacagtacactcatcag 414
               |||||| ||| ||| | ||||||||||
Sbjct: 112048 tcgtatattcccacactgcactcatcag 112021

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>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0551A11
          Length = 132384

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                         
Query: 267   tcatcgttgtttgcaaacttctcaatcaatatttccatcattttcttgtacattggcata 326
             ||||| ||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||| 
Sbjct: 44285 tcatcattgttcgcaaacttctcaatcaatatttccattgttttcttatacatcggcatg 44226

                                                                         
Query: 327   taatggtcattgatcatggtattagatagtcggatcttgctgtaaagatgtctcggtgtc 386
             |||||||||||||||||||| || ||||| ||||| || ||||||||||  || || |||
Sbjct: 44225 taatggtcattgatcatggtgttggatagacggattttactgtaaagatcccttggggtc 44166

                                         
Query: 387   ccgtataatccaacagtacactcatcag 414
              |||||| ||| ||| | ||||||||||
Sbjct: 44165 tcgtatattcccacactgcactcatcag 44138

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>dbj|AK100627.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108O19, full
            insert sequence
          Length = 2283

 Score =  127 bits (64), Expect = 3e-26
 Identities = 127/148 (85%)
 Strand = Plus / Minus

                                                                        
Query: 267  tcatcgttgtttgcaaacttctcaatcaatatttccatcattttcttgtacattggcata 326
            ||||| ||||| ||||||||||||||||||||||||||  ||||||| ||||| ||||| 
Sbjct: 2043 tcatcattgttcgcaaacttctcaatcaatatttccattgttttcttatacatcggcatg 1984

                                                                        
Query: 327  taatggtcattgatcatggtattagatagtcggatcttgctgtaaagatgtctcggtgtc 386
            |||||||||||||||||||| || ||||| ||||| || ||||||||||  || || |||
Sbjct: 1983 taatggtcattgatcatggtgttggatagacggattttactgtaaagatcccttggggtc 1924

                                        
Query: 387  ccgtataatccaacagtacactcatcag 414
             |||||| ||| ||| | ||||||||||
Sbjct: 1923 tcgtatattcccacactgcactcatcag 1896

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>gb|AC002307.1|HUAC002307 Homo sapiens Chromosome 16 BAC clone CIT987-SK37914  ~complete genomic
              sequence, complete sequence
          Length = 161580

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 274    tgtttgcaaacttctcaatcaa 295
              ||||||||||||||||||||||
Sbjct: 102963 tgtttgcaaacttctcaatcaa 102984

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>emb|BX322784.3| Human DNA sequence from clone RP11-3D23 on chromosome X Contains a
             Sjogren syndrome antigen B (autoantigen La) (SSB)
             pseudogene, complete sequence
          Length = 169147

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 274   tgtttgcaaacttctcaatcaa 295
             ||||||||||||||||||||||
Sbjct: 22298 tgtttgcaaacttctcaatcaa 22277

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>emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chromosome 10 Contains a
             CpG island, complete sequence
          Length = 191752

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   tgtttgcaaacttctcaatcaa 295
             ||||||||||||||||||||||
Sbjct: 91757 tgtttgcaaacttctcaatcaa 91778

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>gb|AC133916.2| Homo sapiens chromosome 16 clone RP11-135K11, complete sequence
          Length = 169142

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 274    tgtttgcaaacttctcaatcaa 295
              ||||||||||||||||||||||
Sbjct: 151688 tgtttgcaaacttctcaatcaa 151709

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>gb|AC141070.2| Homo sapiens chromosome 16 clone RP11-171B13, complete sequence
          Length = 161261

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   tgtttgcaaacttctcaatcaa 295
             ||||||||||||||||||||||
Sbjct: 66766 tgtttgcaaacttctcaatcaa 66787

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>gb|AC138915.2| Homo sapiens chromosome 16 clone RP11-626K17, complete sequence
          Length = 180893

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 274    tgtttgcaaacttctcaatcaa 295
              ||||||||||||||||||||||
Sbjct: 173183 tgtttgcaaacttctcaatcaa 173204

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>gb|AC137800.3| Homo sapiens chromosome 16 clone RP11-652G5, complete sequence
          Length = 196550

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 274    tgtttgcaaacttctcaatcaa 295
              ||||||||||||||||||||||
Sbjct: 102804 tgtttgcaaacttctcaatcaa 102783

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>gb|AC011239.5| Homo sapiens BAC clone RP11-414D15 from 2, complete sequence
          Length = 189875

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 152    ttgtatatattgcaaaatagta 173
              ||||||||||||||||||||||
Sbjct: 175898 ttgtatatattgcaaaatagta 175877

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>gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, complete sequence
          Length = 174688

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 274   tgtttgcaaacttctcaatcaa 295
             ||||||||||||||||||||||
Sbjct: 51920 tgtttgcaaacttctcaatcaa 51899

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>gb|AC139109.1| Homo sapiens chromosome 5 clone RP11-887F16, complete sequence
          Length = 167832

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   tgtttgcaaacttctcaatcaa 295
             ||||||||||||||||||||||
Sbjct: 43332 tgtttgcaaacttctcaatcaa 43353

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>gb|AC136612.2| Homo sapiens chromosome 16 clone RP11-319D11, complete sequence
          Length = 221622

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 274    tgtttgcaaacttctcaatcaa 295
              ||||||||||||||||||||||
Sbjct: 172748 tgtttgcaaacttctcaatcaa 172727

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>gb|AC027354.3| Homo sapiens chromosome 16 clone RP11-179H7, complete sequence
          Length = 182046

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   tgtttgcaaacttctcaatcaa 295
             ||||||||||||||||||||||
Sbjct: 43332 tgtttgcaaacttctcaatcaa 43353

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>gb|AC136625.2| Homo sapiens chromosome 16 clone RP11-554I17, complete sequence
          Length = 184294

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 274   tgtttgcaaacttctcaatcaa 295
             ||||||||||||||||||||||
Sbjct: 58942 tgtttgcaaacttctcaatcaa 58921

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>gb|AC136437.2| Homo sapiens chromosome 16 clone RP11-347D23, complete sequence
          Length = 161397

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 274    tgtttgcaaacttctcaatcaa 295
              ||||||||||||||||||||||
Sbjct: 107296 tgtttgcaaacttctcaatcaa 107317

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>ref|NM_117700.2| Arabidopsis thaliana triacylglycerol lipase AT4G16070 mRNA, complete
            cds
          Length = 2288

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 299  ttccatcattttcttgtacattggcatataatg 331
            ||||||||| || || |||||||||||||||||
Sbjct: 2168 ttccatcatctttttatacattggcatataatg 2136

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>ref|XM_652115.1| Entamoeba histolytica HM-1:IMSS ATP-dependent chromatin remodeling
            protein SNF2H (3.t00009) partial mRNA
          Length = 2868

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 293  caatatttccatcattttctt 313
            |||||||||||||||||||||
Sbjct: 2794 caatatttccatcattttctt 2774

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>gb|AC118681.6| Mus musculus chromosome 16, clone RP23-473M11, complete sequence
          Length = 279112

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 87     tatacatgcactcacactgtc 107
              |||||||||||||||||||||
Sbjct: 212983 tatacatgcactcacactgtc 213003

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>emb|Z97340.2|ATFCA5 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 5
          Length = 209164

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 299   ttccatcattttcttgtacattggcatataatg 331
             ||||||||| || || |||||||||||||||||
Sbjct: 63505 ttccatcatctttttatacattggcatataatg 63537

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>emb|AL161543.2|ATCHRIV43 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 43
          Length = 198226

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 299   ttccatcattttcttgtacattggcatataatg 331
             ||||||||| || || |||||||||||||||||
Sbjct: 32495 ttccatcatctttttatacattggcatataatg 32527

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>gb|AC105226.4| Homo sapiens chromosome 8, clone RP11-970F14, complete sequence
          Length = 107318

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 274  tgtttgcaaacttctcaatca 294
            |||||||||||||||||||||
Sbjct: 1870 tgtttgcaaacttctcaatca 1850

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>gb|AY093277.1| Arabidopsis thaliana unknown protein (Z97340.15) mRNA, complete cds
          Length = 1995

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 299  ttccatcattttcttgtacattggcatataatg 331
            ||||||||| || || |||||||||||||||||
Sbjct: 1923 ttccatcatctttttatacattggcatataatg 1891

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>gb|AY062490.1| Arabidopsis thaliana Unknown protein (Z97340.15) mRNA, complete cds
          Length = 2289

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 299  ttccatcattttcttgtacattggcatataatg 331
            ||||||||| || || |||||||||||||||||
Sbjct: 2168 ttccatcatctttttatacattggcatataatg 2136

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>gb|AC007380.3| Homo sapiens BAC clone RP11-150O13 from 2, complete sequence
          Length = 207362

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 7     caaagaggatacattttaaaa 27
             |||||||||||||||||||||
Sbjct: 13435 caaagaggatacattttaaaa 13415

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>gb|AC118650.5| Homo sapiens chromosome 8, clone CTD-2326I15, complete sequence
          Length = 105410

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 274   tgtttgcaaacttctcaatca 294
             |||||||||||||||||||||
Sbjct: 42440 tgtttgcaaacttctcaatca 42460

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>emb|BX004817.8| Zebrafish DNA sequence from clone DKEY-169B7, complete sequence
          Length = 174174

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 157    tatattgcaaaatagtataat 177
              |||||||||||||||||||||
Sbjct: 152677 tatattgcaaaatagtataat 152697

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>emb|AL645928.9| Mouse DNA sequence from clone RP23-185J21 on chromosome 11, complete
             sequence
          Length = 158913

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    aaaaccaacaggataacacaa 44
             |||||||||||||||||||||
Sbjct: 31111 aaaaccaacaggataacacaa 31131

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>gb|AC109298.19| Mus musculus chromosome 3, clone RP24-271A4, complete sequence
          Length = 191546

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    atcaatatttccatcatttt 310
              ||||||||||||||||||||
Sbjct: 128821 atcaatatttccatcatttt 128840

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>gb|AC135419.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0044P19, complete sequence
          Length = 176917

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 155   tatatattgcaaaatagtat 174
             ||||||||||||||||||||
Sbjct: 37097 tatatattgcaaaatagtat 37116

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>gb|AC175749.2| Pan troglodytes BAC clone CH251-1124N9 from chromosome y, complete
             sequence
          Length = 176979

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 275   gtttgcaaacttctcaatcaatat 298
             |||| |||||||||||||||||||
Sbjct: 51221 gtttccaaacttctcaatcaatat 51198

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>emb|CR450764.3| Zebrafish DNA sequence from clone CH211-209F22 in linkage group 11,
             complete sequence
          Length = 152815

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   tatattgcaaaatagtataa 176
             ||||||||||||||||||||
Sbjct: 54612 tatattgcaaaatagtataa 54593

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>ref|XM_763636.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_226_38825_42739)
            partial mRNA
          Length = 3915

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 272  gttgtttgcaaacttctcaatcaa 295
            |||||||||| |||||||||||||
Sbjct: 2226 gttgtttgcatacttctcaatcaa 2203

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>gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complete sequence
          Length = 144546

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 332   gtcattgatcatggtattag 351
             ||||||||||||||||||||
Sbjct: 26578 gtcattgatcatggtattag 26559

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>emb|CR749176.14| Zebrafish DNA sequence from clone DKEY-43B13 in linkage group 19,
             complete sequence
          Length = 237649

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tatattgcaaaatagtataa 176
             ||||||||||||||||||||
Sbjct: 35812 tatattgcaaaatagtataa 35831

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>emb|AL591645.35| Human DNA sequence from clone RP13-971O21 on chromosome Xp11.1-11.22,
             complete sequence
          Length = 148773

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 276   tttgcaaacttctcaatcaa 295
             ||||||||||||||||||||
Sbjct: 85365 tttgcaaacttctcaatcaa 85346

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>emb|AL603789.3| Human DNA sequence from clone RP11-415G4 on chromosome 13, complete
             sequence
          Length = 129361

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 180   ctaatcacatctaaacagaaaaga 203
             |||| |||||||||||||||||||
Sbjct: 33344 ctaaacacatctaaacagaaaaga 33321

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>ref|XM_783606.1| PREDICTED: Strongylocentrotus purpuratus similar to Neurogenic
           locus Notch protein precursor (LOC583708), mRNA
          Length = 2712

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 ccagagttgtcatcgttgtt 277
           ||||||||||||||||||||
Sbjct: 710 ccagagttgtcatcgttgtt 691

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>emb|BX842642.1| Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence;
              segment 1/4
          Length = 347558

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 285    ttctcaatcaatatttccat 304
              ||||||||||||||||||||
Sbjct: 111952 ttctcaatcaatatttccat 111933

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>emb|AL691468.12| Mouse DNA sequence from clone RP23-20K13 on chromosome 4 Contains the
             3' end of a novel gene (4933412J03Rik), a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, the Tnfsf15 gene for tumor necrosis factor
             (ligand) superfamily member 15 and the 3' end of the
             Tnfsf8 for tumor necrosis factor (ligand) superfamily
             member 8, complete sequence
          Length = 212420

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   tacacttgatgtataagtca 231
             ||||||||||||||||||||
Sbjct: 33969 tacacttgatgtataagtca 33950

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>gb|AC020654.23| Homo sapiens 12 BAC RP11-496H24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 160019

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 274   tgtttgcaaacttctcaatcaata 297
             ||||| ||||||||||||||||||
Sbjct: 36742 tgtttccaaacttctcaatcaata 36719

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>emb|CR384108.7| Zebrafish DNA sequence from clone DKEYP-26H11 in linkage group 22,
             complete sequence
          Length = 167824

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tatattgcaaaatagtataa 176
             ||||||||||||||||||||
Sbjct: 87131 tatattgcaaaatagtataa 87150

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>gb|AC148826.4| Pan troglodytes BAC clone CH251-484F13 from chromosome 7, complete
             sequence
          Length = 184163

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   acatctaaacagaaaagaaa 205
             ||||||||||||||||||||
Sbjct: 99640 acatctaaacagaaaagaaa 99659

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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 219    gatgtataagtcaaccacta 238
              ||||||||||||||||||||
Sbjct: 657302 gatgtataagtcaaccacta 657283

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>gb|AC148318.3| Pan troglodytes BAC clone CH251-496K6 from chromosome 7, complete
             sequence
          Length = 194952

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   acatctaaacagaaaagaaa 205
             ||||||||||||||||||||
Sbjct: 75006 acatctaaacagaaaagaaa 75025

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 155      tatatattgcaaaatagtat 174
                ||||||||||||||||||||
Sbjct: 20723873 tatatattgcaaaatagtat 20723892

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>gb|AC073485.3| Homo sapiens BAC clone RP11-798J16 from 2, complete sequence
          Length = 140811

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    ctaatgctagtttcctttac 83
             ||||||||||||||||||||
Sbjct: 68549 ctaatgctagtttcctttac 68568

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>gb|AF323588.1|AF323588 Manduca sexta sensory neuron membrane protein 2 mRNA, complete cds
          Length = 1874

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 184 tcacatctaaacagaaaagaaact 207
           |||||||||||||||| |||||||
Sbjct: 839 tcacatctaaacagaacagaaact 862

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>gb|AC154845.2| Mus musculus BAC clone RP23-48E18 from chromosome 14, complete sequence
          Length = 211129

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 184   tcacatctaaacagaaaagaaact 207
             ||||||| ||||||||||||||||
Sbjct: 47927 tcacatcaaaacagaaaagaaact 47950

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>emb|AL935324.8| Zebrafish DNA sequence from clone CH211-197B6 in linkage group 10,
             complete sequence
          Length = 197730

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 274   tgtttgcaaacttctcaatcaatatttc 301
             ||||||||||||||||| | ||||||||
Sbjct: 66010 tgtttgcaaacttctcacttaatatttc 66037

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>gb|AC004534.1|AC004534 Homo sapiens PAC clone RP4-545C24 from 7q21-q22, complete sequence
          Length = 155952

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   acatctaaacagaaaagaaa 205
             ||||||||||||||||||||
Sbjct: 51059 acatctaaacagaaaagaaa 51040

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>ref|NM_211022.1| Eremothecium gossypii AFR121Wp (AFR121W), mRNA
          Length = 1668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 219 gatgtataagtcaaccacta 238
           ||||||||||||||||||||
Sbjct: 372 gatgtataagtcaaccacta 353

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>emb|BX649245.16| Zebrafish DNA sequence from clone CH211-213C4 in linkage group 22,
             complete sequence
          Length = 201091

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   tatattgcaaaatagtataa 176
             ||||||||||||||||||||
Sbjct: 67799 tatattgcaaaatagtataa 67818

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>emb|Z72902.1|SCYGR117C S.cerevisiae chromosome VII reading frame ORF YGR117c
          Length = 6315

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 411  tcagtgacaataggatcatc 430
            ||||||||||||||||||||
Sbjct: 1099 tcagtgacaataggatcatc 1080

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>emb|Z72899.1|SCYGR114C S.cerevisiae chromosome VII reading frame ORF YGR114c
          Length = 5147

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 411  tcagtgacaataggatcatc 430
            ||||||||||||||||||||
Sbjct: 1856 tcagtgacaataggatcatc 1837

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>gb|DQ332626.1| Synthetic construct Saccharomyces cerevisiae clone FLH148818.01X SPT6
            gene, complete sequence
          Length = 4356

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 411  tcagtgacaataggatcatc 430
            ||||||||||||||||||||
Sbjct: 1349 tcagtgacaataggatcatc 1330

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>gb|M34391.1|YSCSPT6A S.cerevisiae SPT6 gene
          Length = 5093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 411  tcagtgacaataggatcatc 430
            ||||||||||||||||||||
Sbjct: 1747 tcagtgacaataggatcatc 1728


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,846,763
Number of Sequences: 3902068
Number of extensions: 4846763
Number of successful extensions: 105645
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105378
Number of HSP's gapped (non-prelim): 267
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result