ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet69e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467094.1| Oryza sativa (japonica cultivar-group), mRNA 86 1e-13
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
3dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
4emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 86 1e-13
5gb|AC013269.10| Homo sapiens BAC clone RP11-356I10 from 2, compl... 48 0.021
6gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, compl... 48 0.021
7gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, co... 44 0.34
8ref|NM_135619.1| Drosophila melanogaster CG17085-RA (CG17085), mRNA 44 0.34
9gb|AC007147.8|AC007147 Drosophila melanogaster, chromosome 2L, r... 44 0.34
10gb|AC007186.9|AC007186 Drosophila melanogaster, chromosome 2L, r... 44 0.34
11gb|AF121361.1|AF121361 Drosophila melanogaster signal transducti... 44 0.34
12gb|AE003630.2| Drosophila melanogaster chromosome 2L, section 39... 44 0.34
13gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 1.3
14gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare str... 42 1.3
15gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nippon... 42 1.3
16dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
17dbj|AP006467.1| Megaptera novaeangliae mitochondrial DNA, comple... 42 1.3
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
19gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 5.2
20emb|AJ278243.1|TAE278243 Triticum aestivum mRNA for triosephosph... 40 5.2
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
22gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Can... 40 5.2
23gb|AC119914.10| Mus musculus chromosome 15, clone RP24-244H15, c... 40 5.2
24dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
25dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.2
26gb|AC131299.11| Mus musculus chromosome 15, clone RP23-335O2, co... 40 5.2
27gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 40 5.2
28gb|AC132403.5| Mus musculus BAC clone RP23-406I13 from 1, comple... 40 5.2
29gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.2
30dbj|D10769.1|PSEMFA Pseudomonas sp. gene for maltopentaose formi... 40 5.2 
>ref|XM_467094.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1158

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 101/119 (84%), Gaps = 6/119 (5%)
 Strand = Plus / Minus

                                                                        
Query: 219  cgtcgggcatgacgacgacgaacccttcgtctccgcc--cgcc----acgattctgtagg 272
            |||||||||| |||||||||| |||||||||||||||  ||||    ||||| ||| |||
Sbjct: 1114 cgtcgggcatcacgacgacgagcccttcgtctccgccaccgccggtcacgatgctgcagg 1055

                                                                       
Query: 273  acacatgcacgggcttgacgtccctgatagccagctcctccagccccagctcgccccac 331
            | |||||||||||||||  | ||||||   |||||||||||||||||||||||| ||||
Sbjct: 1054 agacatgcacgggcttgctgcccctgagcaccagctcctccagccccagctcgctccac 996
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 101/119 (84%), Gaps = 6/119 (5%)
 Strand = Plus / Plus

                                                                            
Query: 219      cgtcgggcatgacgacgacgaacccttcgtctccgcc--cgcc----acgattctgtagg 272
                |||||||||| |||||||||| |||||||||||||||  ||||    ||||| ||| |||
Sbjct: 26368606 cgtcgggcatcacgacgacgagcccttcgtctccgccaccgccggtcacgatgctgcagg 26368665

                                                                           
Query: 273      acacatgcacgggcttgacgtccctgatagccagctcctccagccccagctcgccccac 331
                | |||||||||||||||  | ||||||   |||||||||||||||||||||||| ||||
Sbjct: 26368666 agacatgcacgggcttgctgcccctgagcaccagctcctccagccccagctcgctccac 26368724
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:P0491E01
          Length = 136150

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 101/119 (84%), Gaps = 6/119 (5%)
 Strand = Plus / Plus

                                                                          
Query: 219    cgtcgggcatgacgacgacgaacccttcgtctccgcc--cgcc----acgattctgtagg 272
              |||||||||| |||||||||| |||||||||||||||  ||||    ||||| ||| |||
Sbjct: 100958 cgtcgggcatcacgacgacgagcccttcgtctccgccaccgccggtcacgatgctgcagg 101017

                                                                         
Query: 273    acacatgcacgggcttgacgtccctgatagccagctcctccagccccagctcgccccac 331
              | |||||||||||||||  | ||||||   |||||||||||||||||||||||| ||||
Sbjct: 101018 agacatgcacgggcttgctgcccctgagcaccagctcctccagccccagctcgctccac 101076
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 101/119 (84%), Gaps = 6/119 (5%)
 Strand = Plus / Plus

                                                                         
Query: 219   cgtcgggcatgacgacgacgaacccttcgtctccgcc--cgcc----acgattctgtagg 272
             |||||||||| ||||||| || |||||||||||||||  ||||    ||||| ||| |||
Sbjct: 91862 cgtcgggcatcacgacgatgagcccttcgtctccgccaccgccggtcacgatgctgcagg 91921

                                                                        
Query: 273   acacatgcacgggcttgacgtccctgatagccagctcctccagccccagctcgccccac 331
             | |||||||||||||||  ||||||||   |||||||||||||||||||||||| ||||
Sbjct: 91922 agacatgcacgggcttgctgtccctgagcaccagctcctccagccccagctcgctccac 91980
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>gb|AC013269.10| Homo sapiens BAC clone RP11-356I10 from 2, complete sequence
          Length = 165797

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 301    agccagctcctccagccccagctc 324
              ||||||||||||||||||||||||
Sbjct: 148577 agccagctcctccagccccagctc 148600



 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 301   agccagctcctccagccccagctc 324
             ||||||||||||||||||||||||
Sbjct: 48193 agccagctcctccagccccagctc 48170
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>gb|AC140481.3| Homo sapiens BAC clone RP11-1216L17 from 2, complete sequence
          Length = 219471

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 301    agccagctcctccagccccagctc 324
              ||||||||||||||||||||||||
Sbjct: 180065 agccagctcctccagccccagctc 180042
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>gb|AC133459.9| Mus musculus chromosome 12, clone RP23-383O15, complete sequence
          Length = 227171

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 50    gaagtaaagtacaatttgtata 71
             ||||||||||||||||||||||
Sbjct: 32860 gaagtaaagtacaatttgtata 32839
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>ref|NM_135619.1| Drosophila melanogaster CG17085-RA (CG17085), mRNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 304 cagctcctccagccccagctcgcccc 329
           ||||||||||||| ||||||||||||
Sbjct: 96  cagctcctccagcaccagctcgcccc 71
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>gb|AC007147.8|AC007147 Drosophila melanogaster, chromosome 2L, region 32A-, BAC clone
             BACR19N18, complete sequence
          Length = 196248

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 304   cagctcctccagccccagctcgcccc 329
             ||||||||||||| ||||||||||||
Sbjct: 66257 cagctcctccagcaccagctcgcccc 66282
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>gb|AC007186.9|AC007186 Drosophila melanogaster, chromosome 2L, region 32A-, BAC clone
             BACR03D06, complete sequence
          Length = 176306

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 304   cagctcctccagccccagctcgcccc 329
             ||||||||||||| ||||||||||||
Sbjct: 20496 cagctcctccagcaccagctcgcccc 20471
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>gb|AF121361.1|AF121361 Drosophila melanogaster signal transducting adaptor protein (STAM),
             serine threonine kinase Ial (IAL), and zinc finger protein
             (DNZ1) genes, complete cds
          Length = 16023

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 304   cagctcctccagccccagctcgcccc 329
             ||||||||||||| ||||||||||||
Sbjct: 15608 cagctcctccagcaccagctcgcccc 15633
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>gb|AE003630.2| Drosophila melanogaster chromosome 2L, section 39 of 83 of the complete
             sequence
          Length = 289460

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 304   cagctcctccagccccagctcgcccc 329
             ||||||||||||| ||||||||||||
Sbjct: 83384 cagctcctccagcaccagctcgcccc 83359
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 342     ccagcgcgtggccggcgccgt 362
               |||||||||||||||||||||
Sbjct: 2677007 ccagcgcgtggccggcgccgt 2677027
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>gb|AC098682.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0004A10, from chromosome 10, complete sequence
          Length = 144271

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 2     aacagagggagtagatattgt 22
             |||||||||||||||||||||
Sbjct: 13426 aacagagggagtagatattgt 13446
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>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0065C16, from Chromosome 10, complete sequence
          Length = 146391

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      aacagagggagtagatattgt 22
              |||||||||||||||||||||
Sbjct: 102970 aacagagggagtagatattgt 102990
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 2       aacagagggagtagatattgt 22
               |||||||||||||||||||||
Sbjct: 8417820 aacagagggagtagatattgt 8417800
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>dbj|AP006467.1| Megaptera novaeangliae mitochondrial DNA, complete genome
          Length = 16398

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 62    aatttgtatatgatgttataa 82
             |||||||||||||||||||||
Sbjct: 11876 aatttgtatatgatgttataa 11856
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 2       aacagagggagtagatattgt 22
               |||||||||||||||||||||
Sbjct: 8422919 aacagagggagtagatattgt 8422899
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 348    cgtggccggcgccgtccttc 367
              ||||||||||||||||||||
Sbjct: 830617 cgtggccggcgccgtccttc 830636
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>emb|AJ278243.1|TAE278243 Triticum aestivum mRNA for triosephosphat-isomerase (tpis gene)
          Length = 762

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 203 acgaggaaaccatcgccgtcgggc 226
           ||||||||||||||| ||||||||
Sbjct: 695 acgaggaaaccatcgacgtcgggc 672
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                           
Query: 2       aacagagggagtagatat-tgttgtata 28
               |||||||||||||||||| |||||||||
Sbjct: 3212034 aacagagggagtagatatatgttgtata 3212007
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>gb|AC126177.8| Homo sapiens 12 BAC RP11-554D14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 131209

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 295   cctgatagccagctcctccagccc 318
             |||||| |||||||||||||||||
Sbjct: 28149 cctgatggccagctcctccagccc 28172
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>gb|AC119914.10| Mus musculus chromosome 15, clone RP24-244H15, complete sequence
          Length = 213223

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 301   agccagctcctccagcccca 320
             ||||||||||||||||||||
Sbjct: 93333 agccagctcctccagcccca 93314
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>dbj|AP005454.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0455F03
          Length = 158201

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                          
Query: 2      aacagagggagtagatat-tgttgtata 28
              |||||||||||||||||| |||||||||
Sbjct: 127024 aacagagggagtagatatatgttgtata 126997
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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                         
Query: 2     aacagagggagtagatat-tgttgtata 28
             |||||||||||||||||| |||||||||
Sbjct: 21727 aacagagggagtagatatatgttgtata 21700
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>gb|AC131299.11| Mus musculus chromosome 15, clone RP23-335O2, complete sequence
          Length = 215708

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 301    agccagctcctccagcccca 320
              ||||||||||||||||||||
Sbjct: 198676 agccagctcctccagcccca 198695
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 334    cgcagcttccagcgcgtggccggc 357
              |||||| |||||||||||||||||
Sbjct: 111090 cgcagcgtccagcgcgtggccggc 111113
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>gb|AC132403.5| Mus musculus BAC clone RP23-406I13 from 1, complete sequence
          Length = 172850

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    aatttgtatatgatgttata 81
             ||||||||||||||||||||
Sbjct: 68415 aatttgtatatgatgttata 68434
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>gb|AC167966.4| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940126D9, complete sequence
          Length = 125236

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    ctcctccagccccagctcgc 326
              ||||||||||||||||||||
Sbjct: 107594 ctcctccagccccagctcgc 107575
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>dbj|D10769.1|PSEMFA Pseudomonas sp. gene for maltopentaose forming amylase, complete cds
          Length = 3496

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  gccggcgccgtccttcttca 371
            ||||||||||||||||||||
Sbjct: 2474 gccggcgccgtccttcttca 2455


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,903,389
Number of Sequences: 3902068
Number of extensions: 2903389
Number of successful extensions: 63016
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 62806
Number of HSP's gapped (non-prelim): 213
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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