ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet69d05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.1... 28 4.6
2GAM1_ORYSA (P93417) Transcription factor GAMYB (OsGAMyb) 28 4.6
3RNS10_SHEEP (Q70IB1) Ribonuclease-like protein 10 precursor (Pro... 28 6.1
4LYSC_EQUAS (P11375) Lysozyme C (EC 3.2.1.17) (1,4-beta-N-acetylm... 28 7.9
5LYSC1_HORSE (P11376) Lysozyme C, milk isozyme (EC 3.2.1.17) (1,4... 28 7.9

>APX1_PEA (P48534) L-ascorbate peroxidase, cytosolic (EC 1.11.1.11) (AP)|
          Length = 249

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = -2

Query: 279 EAHLRLSELGYAEA 238
           EAHL+LSELG+AEA
Sbjct: 236 EAHLKLSELGFAEA 249



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>GAM1_ORYSA (P93417) Transcription factor GAMYB (OsGAMyb)|
          Length = 553

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 100 LERCQWFGVPLY--SVCLDAINLSYEMNCSSDF 8
           ++RCQ  G+P+Y  SVC  + N   +  CSSDF
Sbjct: 140 IKRCQRAGLPIYPTSVCNQSSN--EDQQCSSDF 170



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>RNS10_SHEEP (Q70IB1) Ribonuclease-like protein 10 precursor (Protein Train A)|
           (Fragment)
          Length = 161

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 98  KVWPQANKHYYRDDYL-AVCGLTLTPSLDAEQDHP 199
           +V  Q+NKHY R D +   C   + P+L + +DHP
Sbjct: 96  EVLSQSNKHYLRSDVMDRECNALMAPNLKS-KDHP 129



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>LYSC_EQUAS (P11375) Lysozyme C (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase C)|
          Length = 129

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 56  ANRVQRHTKPLTAFKVWPQANKHYYRDDYLAVCGL 160
           A RV R  K ++A+K W +  K     +YLA C L
Sbjct: 95  AKRVVRDPKGMSAWKAWVKHCKDKDLSEYLASCNL 129



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>LYSC1_HORSE (P11376) Lysozyme C, milk isozyme (EC 3.2.1.17)|
           (1,4-beta-N-acetylmuramidase C)
          Length = 129

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 56  ANRVQRHTKPLTAFKVWPQANKHYYRDDYLAVCGL 160
           A RV R  K ++A+K W +  K     +YLA C L
Sbjct: 95  AKRVVRDPKGMSAWKAWVKHCKDKDLSEYLASCNL 129


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,475,184
Number of Sequences: 219361
Number of extensions: 545023
Number of successful extensions: 1185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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