ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet69c11 |
|---|---|
| Clone Library Name | barley_pub |
>FOG1_BRARE (P60622) Zinc finger protein FOG1 (Friend of Gata1) (Zinc finger| protein multitype 1) (Fragment) Length = 224 Score = 31.2 bits (69), Expect = 0.64 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 7/56 (12%) Frame = +3 Query: 9 KAVSLSLTDPDEKR*RCTDDT-GHAPIDGVASEAARSPRGV------DPTQTWAAA 155 K V + + DP K C+ + G P G ASE ++SP G DPT+T+ A Sbjct: 117 KVVEVKIEDPGLKDATCSSSSEGEGPGGGQASEGSQSPSGSAEDQDDDPTRTFCQA 172
>FOXJ2_MOUSE (Q9ES18) Forkhead box protein J2 (Fork head homologous X)| Length = 565 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/68 (30%), Positives = 29/68 (42%) Frame = +3 Query: 30 TDPDEKR*RCTDDTGHAPIDGVASEAARSPRGVDPTQTWAAATHEHELD*SVEAPVDAEN 209 T PD R R D EA++SPRG P A+ +HE S+++P N Sbjct: 144 TCPDISRKRRHPPDDDLSQDSPEQEASKSPRGGVPGSGEASLSHEGTPQMSLQSPSSVAN 203 Query: 210 TEDPPRAV 233 P +V Sbjct: 204 YSQGPGSV 211
>SYFB_BACHK (Q6HCW8) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Frame = +3 Query: 90 GVASEA-ARSPRGVDPTQTWAAATHEHEL------D*SVEAPVDAENTEDPPRAVHV 239 G+ SE+ AR +G+DPT+T+ A H L ++E V+A+N + R V V Sbjct: 360 GLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSV 416
>SYFB_BACCZ (Q633N5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Frame = +3 Query: 90 GVASEA-ARSPRGVDPTQTWAAATHEHEL------D*SVEAPVDAENTEDPPRAVHV 239 G+ SE+ AR +G+DPT+T+ A H L ++E V+A+N + R V V Sbjct: 360 GLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSV 416
>SYFB_BACCR (Q817I7) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Frame = +3 Query: 90 GVASEA-ARSPRGVDPTQTWAAATHEHEL------D*SVEAPVDAENTEDPPRAVHV 239 G+ SE+ AR +G+DPT+T+ A H L ++E V+A+N + R V V Sbjct: 360 GLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSV 416
>SYFB_BACC1 (Q72ZI2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Frame = +3 Query: 90 GVASEA-ARSPRGVDPTQTWAAATHEHEL------D*SVEAPVDAENTEDPPRAVHV 239 G+ SE+ AR +G+DPT+T+ A H L ++E V+A+N + R V V Sbjct: 360 GLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSV 416
>SYFB_BACAN (Q81L31) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 806 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 7/57 (12%) Frame = +3 Query: 90 GVASEA-ARSPRGVDPTQTWAAATHEHEL------D*SVEAPVDAENTEDPPRAVHV 239 G+ SE+ AR +G+DPT+T+ A H L ++E V+A+N + R V V Sbjct: 360 GLRSESSARFEKGIDPTRTFEAIQHAAALMAKYAGGEALEGVVEADNLQVQERTVSV 416
>VATE_NEUCR (Q01278) Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E| subunit) (Vacuolar proton pump E subunit) (V-ATPase 26 kDa subunit) Length = 230 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/22 (50%), Positives = 17/22 (77%) Frame = +3 Query: 144 WAAATHEHELD*SVEAPVDAEN 209 WA+A ++H+ D V+A +DAEN Sbjct: 154 WASAQYKHKTDKDVKATIDAEN 175
>SYK_NATPD (Q3IRL7) Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase)| (LysRS) Length = 545 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +3 Query: 12 AVSLSLTDPDEKR*RCTDDTGHAPIDGVASEAARSPRGVDPTQTWAAAT 158 A L +TD + R + +GH P D + R+ V+ + WA T Sbjct: 400 AAVLGMTDDRDLRLQMAQRSGHIPDDATDDQIERALERVEKARAWAVRT 448
>ITB1_MOUSE (P09055) Integrin beta-1 precursor (Fibronectin receptor beta| subunit) (Integrin VLA-4 beta subunit) (CD29 antigen) Length = 798 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Frame = +2 Query: 128 RSNADVGGSNP*TRARLICRSPGGRRKYRRSTEGCARMAGHQLAASSMLCS-----EGRH 292 RSN + G N R R+ P Y S C+ G LA++ +C+ E Sbjct: 562 RSNGLICGGNGVCRCRVCECYPN----YTGSACDCSLDTGPCLASNGQICNGRGICECGA 617 Query: 293 CRCRAPELRWPSPPSCR 343 C+C P+ + P+ +C+ Sbjct: 618 CKCTDPKFQGPTCETCQ 634
>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2| (Retina-derived POU-domain factor 1) (RPF-1) Length = 684 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/48 (37%), Positives = 26/48 (54%) Frame = +3 Query: 81 PIDGVASEAARSPRGVDPTQTWAAATHEHELD*SVEAPVDAENTEDPP 224 P+ V SE RG D AAT + EL+ + APV++ ++ED P Sbjct: 9 PLLSVRSEMNAELRGEDK-----AATSDSELNEPLLAPVESNDSEDTP 51
>BSC5_YEAST (P53755) Bypass of stop codon protein 5| Length = 489 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/28 (53%), Positives = 17/28 (60%) Frame = -1 Query: 162 HGLLPPTSALDRHPEASGPLLKRLRRSE 79 H LLPPT DR P +S P L L+ SE Sbjct: 323 HSLLPPTLGFDR-PSSSHPELSTLKFSE 349
>TESK1_RAT (Q63572) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 628 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = +2 Query: 215 RSTEGCARMAGHQLAASSMLCSEGRHCRCRAPELRWPSPPS 337 R T AR A S+LC G H + P L+ P S Sbjct: 588 RPTPAVARYRNLNCEAGSLLCHRGHHAKPPTPSLQLPGARS 628
>ENV_HV1Z6 (P04580) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 855 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/40 (30%), Positives = 21/40 (52%) Frame = +1 Query: 100 QKRPARLGVSIQRRRGRQQPMNTS*INLSKPRWTPKIQKI 219 Q P LG ++ RGR + + + N+SK W +Q++ Sbjct: 307 QSTPIGLGQALYTTRGRTKIIGQAHCNISKEDWNKTLQRV 346
>TESK1_MOUSE (O70146) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 627 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = +2 Query: 215 RSTEGCARMAGHQLAASSMLCSEGRHCRCRAPELRWPSPPS 337 R T AR A S+LC G H + P L+ P S Sbjct: 587 RPTPAVARYRNLNCEAGSLLCHRGHHAKPPTPSLQLPGARS 627
>RSPO4_HUMAN (Q2I0M5) R-spondin-4 precursor (Roof plate-specific spondin-4)| (hRspo4) Length = 234 Score = 27.7 bits (60), Expect = 7.1 Identities = 19/55 (34%), Positives = 24/55 (43%) Frame = +2 Query: 146 GGSNP*TRARLICRSPGGRRKYRRSTEGCARMAGHQLAASSMLCSEGRHCRCRAP 310 GG +P T C S G R A AGH+ AA+ + SE R C + P Sbjct: 145 GGWSPCTHNGKTCGSAWGLESRVRE----AGRAGHEEAATCQVLSESRKCPIQRP 195
>TESK1_HUMAN (Q15569) Dual specificity testis-specific protein kinase 1 (EC| 2.7.12.1) (Testicular protein kinase 1) Length = 626 Score = 27.7 bits (60), Expect = 7.1 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = +2 Query: 215 RSTEGCARMAGHQLAASSMLCSEGRHCRCRAPELRWPSPPS 337 R T AR A S+LC G H + P L+ P S Sbjct: 586 RPTPAVARYRNLNCEAGSLLCHRGHHAKPPTPSLQLPGARS 626
>SCNNG_HUMAN (P51170) Amiloride-sensitive sodium channel gamma-subunit| (Epithelial Na+ channel gamma subunit) (Gamma ENaC) (Nonvoltage-gated sodium channel 1 gamma subunit) (SCNEG) (Gamma NaCH) Length = 649 Score = 27.3 bits (59), Expect = 9.2 Identities = 9/25 (36%), Positives = 14/25 (56%) Frame = -2 Query: 260 PRADARPYVHSPRWIFCIFGVHRGF 186 P A+ Y P W++C + +HR F Sbjct: 418 PAANYCNYQQHPNWMYCYYQLHRAF 442
>FRDC_HELPY (O06912) Fumarate reductase cytochrome b subunit| Length = 255 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/34 (41%), Positives = 17/34 (50%) Frame = +1 Query: 163 NTS*INLSKPRWTPKIQKIHRGLCTYGRASARGL 264 N S L K +W + I GLCTYG +GL Sbjct: 199 NVSIQGLRKVKWAMSVFFIVLGLCTYGAYIKKGL 232
>V30K_HCMVE (P06724) 30 kDa major early protein| Length = 254 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = -2 Query: 281 RCTASTRPRA-DARPYVHSPRWIFCIFGVHRG 189 RC +S RP + R + S RW+ + G HRG Sbjct: 27 RCASSLRPVSLCGRGWCESTRWVALVSGDHRG 58
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%) Frame = +2 Query: 167 RARLICRSPGGR-----RKYRRSTEGC--ARMAGHQLAASSMLCSEGRHCRCR 304 R R +CR+PG + +R+ + C A G+ + + +C CRCR Sbjct: 49 RGRNVCRAPGSQVPTCCAGWRQQGDECGIAVCEGNSTCSENEVCVRPGECRCR 101
>OX1R_MOUSE (P58307) Orexin receptor type 1 (Ox1r) (Hypocretin receptor type 1)| Length = 416 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/46 (32%), Positives = 26/46 (56%) Frame = +1 Query: 145 GRQQPMNTS*INLSKPRWTPKIQKIHRGLCTYGRASARGLVDAVQR 282 GRQ P TS + + R + +++ H+GLCT + AR + V++ Sbjct: 244 GRQIPGTTSALVRNWKRPSEQLEAQHQGLCTEPQPRARAFLAEVKQ 289
>CBIP_SALTY (Q05597) Cobyric acid synthase| Length = 506 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -1 Query: 243 AIRAQPSVDLLYFRRPPGLRQINLARVHG 157 A+ AQP V + Y RRP L ++L + G Sbjct: 270 ALAAQPDVRIRYIRRPEALTDVDLVILPG 298
>COAA_STRCO (O86779) Pantothenate kinase (EC 2.7.1.33) (Pantothenic acid| kinase) Length = 329 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = +1 Query: 127 SIQRRRGRQQPMNTS*INLSKPRWTPKIQKIHRGLCTYGRASARGLVDAV 276 SI R RQ+P T ++L++P W+ K L RGL D + Sbjct: 7 SIPRSAHRQRPEATPYVDLTRPEWSALRDKTPLPLTAEEVEKLRGLGDVI 56 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,808,997 Number of Sequences: 219361 Number of extensions: 928753 Number of successful extensions: 2882 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2820 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2882 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
