ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet69c11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
2dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
3dbj|AP004800.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AK069210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
5ref|XM_450801.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
6dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
7dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
8dbj|AP005312.2| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
9dbj|AK107716.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
11dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
12dbj|AP006449.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
13dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
14dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.32
15emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4,... 44 0.32
16ref|XM_504518.1| Yarrowia lipolytica CLIB122, YALI0E28666g predi... 42 1.3
17dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete ... 42 1.3
18gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, compl... 42 1.3
19emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 42 1.3
20gb|AY212505.1| Phaeodactylum tricornutum fructose-1,6-biphosphat... 42 1.3
21ref|XM_465288.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
22ref|XM_506792.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 5.0
23gb|BC017188.2| Homo sapiens KIAA0683 gene product, mRNA (cDNA cl... 40 5.0
24gb|BC028332.1| Homo sapiens KIAA0683 gene product, mRNA (cDNA cl... 40 5.0
25emb|AL031705.25|HS305C8 Human DNA sequence from clone LA16c-305C... 40 5.0
26emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
27gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8 40 5.0
28emb|AL137394.1|HSM802087 Homo sapiens mRNA; cDNA DKFZp434I062 (f... 40 5.0
29emb|AL080126.1|HSM800636 Homo sapiens mRNA; cDNA DKFZp434A073 (f... 40 5.0
30dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.0
31ref|NM_016111.1| Homo sapiens KIAA0683 gene product (KIAA0683), ... 40 5.0
32emb|CR599116.1| full-length cDNA clone CS0DL002YF18 of B cells (... 40 5.0
33dbj|AK001786.1| Homo sapiens cDNA FLJ10924 fis, clone OVARC10004... 40 5.0
34gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequ... 40 5.0
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
36dbj|AB014583.3| Homo sapiens mRNA for KIAA0683 protein, partial cds 40 5.0
37dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.0
38dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
39dbj|AK101809.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
40emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 40 5.0
41dbj|AK064355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
42gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
43emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.0 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                          
Query: 263      tcgtcgatgctgtgcagcgagggccgccattgccggtgccgggcgccggagctccggt 320
                |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct: 31057432 tcgtcgatgctgtgcagcgaaggccgccattgccggtgccgcgcgctggagctccggt 31057489



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 294      gccggtgccgggcgccggagctcc 317
                |||||||| |||||||||||||||
Sbjct: 13096355 gccggtgctgggcgccggagctcc 13096378
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>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0516G10
          Length = 148937

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                        
Query: 263    tcgtcgatgctgtgcagcgagggccgccattgccggtgccgggcgccggagctccggt 320
              |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct: 112388 tcgtcgatgctgtgcagcgaaggccgccattgccggtgccgcgcgctggagctccggt 112445
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>dbj|AP004800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0585G03
          Length = 173649

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Plus

                                                                       
Query: 263   tcgtcgatgctgtgcagcgagggccgccattgccggtgccgggcgccggagctccggt 320
             |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct: 46656 tcgtcgatgctgtgcagcgaaggccgccattgccggtgccgcgcgctggagctccggt 46713
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>dbj|AK069210.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012M02, full
            insert sequence
          Length = 1884

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 55/58 (94%)
 Strand = Plus / Minus

                                                                      
Query: 263  tcgtcgatgctgtgcagcgagggccgccattgccggtgccgggcgccggagctccggt 320
            |||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||
Sbjct: 1497 tcgtcgatgctgtgcagcgaaggccgccattgccggtgccgcgcgctggagctccggt 1440
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>ref|XM_450801.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 965

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 253 gctcgcggcctcgtcgatgctgtgcagcgagggccgccattgccgg 298
           |||||||||||||  |||||| |||||||| |||||||| ||||||
Sbjct: 719 gctcgcggcctcggagatgctctgcagcgacggccgccagtgccgg 674
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 253      gctcgcggcctcgtcgatgctgtgcagcgagggccgccattgccgg 298
                |||||||||||||  |||||| |||||||| |||||||| ||||||
Sbjct: 12860827 gctcgcggcctcggagatgctctgcagcgacggccgccagtgccgg 12860782



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 268      gatgctgtgcagcgagggccgccattgccggtgccggg 305
                ||||||||||||||| || |||||||| || |||||||
Sbjct: 13739326 gatgctgtgcagcgatgggcgccattgacgatgccggg 13739289



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 268     gatgctgtgcagcgagggccgccattgccggtgccggg 305
               ||||||||||||||| || |||||||| || |||||||
Sbjct: 6595573 gatgctgtgcagcgatgggcgccattgacgatgccggg 6595610
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>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0027G10
          Length = 184759

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                            
Query: 253    gctcgcggcctcgtcgatgctgtgcagcgagggccgccattgccgg 298
              |||||||||||||  |||||| |||||||| |||||||| ||||||
Sbjct: 168604 gctcgcggcctcggagatgctctgcagcgacggccgccagtgccgg 168559
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>dbj|AP005312.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0505H05
          Length = 152845

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 253   gctcgcggcctcgtcgatgctgtgcagcgagggccgccattgccgg 298
             |||||||||||||  |||||| |||||||| |||||||| ||||||
Sbjct: 22811 gctcgcggcctcggagatgctctgcagcgacggccgccagtgccgg 22766
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>dbj|AK107716.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-E04, full
           insert sequence
          Length = 965

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 253 gctcgcggcctcgtcgatgctgtgcagcgagggccgccattgccgg 298
           |||||||||||||  |||||| |||||||| |||||||| ||||||
Sbjct: 719 gctcgcggcctcggagatgctctgcagcgacggccgccagtgccgg 674
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 268      gatgctgtgcagcgagggccgccattgccggtgccggg 305
                ||||||||||||||| || |||||||| || |||||||
Sbjct: 14545147 gatgctgtgcagcgatgggcgccattgacgatgccggg 14545110



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 267      cgatgctgtgcagcgagggccgccattg 294
                |||||||||||||||| || ||||||||
Sbjct: 15534735 cgatgctgtgcagcgacgggcgccattg 15534708
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                      
Query: 268      gatgctgtgcagcgagggccgccattgccggtgccggg 305
                ||||||||||||||| || |||||||| || |||||||
Sbjct: 27279294 gatgctgtgcagcgatgggcgccattgacgatgccggg 27279257
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>dbj|AP006449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
            clone:B1106B03
          Length = 155540

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 268  gatgctgtgcagcgagggccgccattgccggtgccggg 305
            ||||||||||||||| || |||||||| || |||||||
Sbjct: 6681 gatgctgtgcagcgatgggcgccattgacgatgccggg 6718
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>dbj|AP005907.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:B1151D08
          Length = 152824

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 268   gatgctgtgcagcgagggccgccattgccggtgccggg 305
             ||||||||||||||| || |||||||| || |||||||
Sbjct: 94243 gatgctgtgcagcgatgggcgccattgacgatgccggg 94280
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>dbj|AP005904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:B1040D06
          Length = 155034

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 268    gatgctgtgcagcgagggccgccattgccggtgccggg 305
              ||||||||||||||| || |||||||| || |||||||
Sbjct: 137440 gatgctgtgcagcgatgggcgccattgacgatgccggg 137403
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>emb|AL606599.3|OSJN00034 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0050F15,
             complete sequence
          Length = 150562

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 268   gatgctgtgcagcgagggccgccattgccggtgccggg 305
             ||||||||||||||| || |||||||| || |||||||
Sbjct: 13284 gatgctgtgcagcgatgggcgccattgacgatgccggg 13247
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>ref|XM_504518.1| Yarrowia lipolytica CLIB122, YALI0E28666g predicted mRNA
          Length = 4746

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 51  tgaagatgtacagacgacaca 71
           |||||||||||||||||||||
Sbjct: 207 tgaagatgtacagacgacaca 227
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>dbj|AP001204.1| Rhodococcus equi plasmid pREAT701 DNA, complete sequence
          Length = 80610

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 255   tcgcggcctcgtcgatgctgtgcag 279
             |||||||||||||||||||| ||||
Sbjct: 62486 tcgcggcctcgtcgatgctgggcag 62510
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>gb|AF116907.2|AF116907 Rhodococcus equi virulence plasmid, complete sequence
          Length = 80609

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 255   tcgcggcctcgtcgatgctgtgcag 279
             |||||||||||||||||||| ||||
Sbjct: 62485 tcgcggcctcgtcgatgctgggcag 62509
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 51      tgaagatgtacagacgacaca 71
               |||||||||||||||||||||
Sbjct: 3400377 tgaagatgtacagacgacaca 3400397
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>gb|AY212505.1| Phaeodactylum tricornutum fructose-1,6-biphosphate aldolase
           precursor (FbaC2) gene, complete cds; nuclear gene for
           chloroplast product
          Length = 1807

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 283 gggccgccattgccggtgccg 303
           |||||||||||||||||||||
Sbjct: 894 gggccgccattgccggtgccg 914
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>ref|XM_465288.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1572

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 294 gccggtgccgggcgccggagctcc 317
           |||||||| |||||||||||||||
Sbjct: 856 gccggtgctgggcgccggagctcc 879
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>ref|XM_506792.1| PREDICTED Oryza sativa (japonica cultivar-group), P0476C12.20 mRNA
          Length = 1694

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 294  gccggtgccgggcgccggagctcc 317
            |||||||| |||||||||||||||
Sbjct: 978  gccggtgctgggcgccggagctcc 1001
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>gb|BC017188.2| Homo sapiens KIAA0683 gene product, mRNA (cDNA clone MGC:1356
            IMAGE:3139743), complete cds
          Length = 3115

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ggccgtctcctccgtcctgc 340
            ||||||||||||||||||||
Sbjct: 2363 ggccgtctcctccgtcctgc 2382
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>gb|BC028332.1| Homo sapiens KIAA0683 gene product, mRNA (cDNA clone IMAGE:4509972)
          Length = 916

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 321 ggccgtctcctccgtcctgc 340
           ||||||||||||||||||||
Sbjct: 132 ggccgtctcctccgtcctgc 151
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>emb|AL031705.25|HS305C8 Human DNA sequence from clone LA16c-305C8 on chromosome 16 Contains an
             RPS3A (40S ribosomal protein S3A) pseudogene, part of the
             gene for a novel protein similar to NPTX1 (neuronal
             pentraxin I), the gene DFKZP434A073 or KIAA0683 and the
             last exon of gene KIAA0590. Contains ESTs, STSs, GSSs and
             eight putative CpG islands, complete sequence
          Length = 42569

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   ggccgtctcctccgtcctgc 340
             ||||||||||||||||||||
Sbjct: 35630 ggccgtctcctccgtcctgc 35649
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>emb|BX569684.2|OSJN00290 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0046K02,
             complete sequence
          Length = 109366

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 267   cgatgctgtgcagcgagggccgccattg 294
             |||||||||||||||| || ||||||||
Sbjct: 76288 cgatgctgtgcagcgacgggcgccattg 76261
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>gb|AE006467.1| Homo sapiens 16p13.3 sequence section 6 of 8
          Length = 279011

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 321    ggccgtctcctccgtcctgc 340
              ||||||||||||||||||||
Sbjct: 177893 ggccgtctcctccgtcctgc 177912
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>emb|AL137394.1|HSM802087 Homo sapiens mRNA; cDNA DKFZp434I062 (from clone DKFZp434I062)
          Length = 3272

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ggccgtctcctccgtcctgc 340
            ||||||||||||||||||||
Sbjct: 2538 ggccgtctcctccgtcctgc 2557
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>emb|AL080126.1|HSM800636 Homo sapiens mRNA; cDNA DKFZp434A073 (from clone DKFZp434A073)
          Length = 3320

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ggccgtctcctccgtcctgc 340
            ||||||||||||||||||||
Sbjct: 2538 ggccgtctcctccgtcctgc 2557
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 135     acgcagacgtgggcggcagc 154
               ||||||||||||||||||||
Sbjct: 3369277 acgcagacgtgggcggcagc 3369296
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>ref|NM_016111.1| Homo sapiens KIAA0683 gene product (KIAA0683), mRNA
          Length = 3320

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ggccgtctcctccgtcctgc 340
            ||||||||||||||||||||
Sbjct: 2538 ggccgtctcctccgtcctgc 2557
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>emb|CR599116.1| full-length cDNA clone CS0DL002YF18 of B cells (Ramos cell line) Cot
            25-normalized of Homo sapiens (human)
          Length = 3148

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ggccgtctcctccgtcctgc 340
            ||||||||||||||||||||
Sbjct: 2468 ggccgtctcctccgtcctgc 2487
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>dbj|AK001786.1| Homo sapiens cDNA FLJ10924 fis, clone OVARC1000443, highly similar to
            Homo sapiens mRNA; cDNA DKFZp434A073
          Length = 1757

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ggccgtctcctccgtcctgc 340
            ||||||||||||||||||||
Sbjct: 1043 ggccgtctcctccgtcctgc 1062
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>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence
          Length = 505334

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    attgccggtgccgggcgccg 310
              ||||||||||||||||||||
Sbjct: 420808 attgccggtgccgggcgccg 420827
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 304      ggcgccggagctccggtggc 323
                ||||||||||||||||||||
Sbjct: 21494333 ggcgccggagctccggtggc 21494314
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>dbj|AB014583.3| Homo sapiens mRNA for KIAA0683 protein, partial cds
          Length = 3309

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 321  ggccgtctcctccgtcctgc 340
            ||||||||||||||||||||
Sbjct: 2595 ggccgtctcctccgtcctgc 2614
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 281     gagggccgccattgccggtgccgg 304
               ||||| ||||||||||||||||||
Sbjct: 2919130 gagggtcgccattgccggtgccgg 2919153
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>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0476C12
          Length = 157570

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 294   gccggtgccgggcgccggagctcc 317
             |||||||| |||||||||||||||
Sbjct: 72932 gccggtgctgggcgccggagctcc 72955
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>dbj|AK101809.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066M05, full
            insert sequence
          Length = 1694

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 294  gccggtgccgggcgccggagctcc 317
            |||||||| |||||||||||||||
Sbjct: 978  gccggtgctgggcgccggagctcc 1001
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 265     gtcgatgctgtgcagcgagg 284
               ||||||||||||||||||||
Sbjct: 1379486 gtcgatgctgtgcagcgagg 1379505
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>dbj|AK064355.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-B01, full
           insert sequence
          Length = 1572

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 294 gccggtgccgggcgccggagctcc 317
           |||||||| |||||||||||||||
Sbjct: 856 gccggtgctgggcgccggagctcc 879
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 304      ggcgccggagctccggtggc 323
                ||||||||||||||||||||
Sbjct: 21422654 ggcgccggagctccggtggc 21422635
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>emb|AL844497.4|CNS08CAU Oryza sativa chromosome 12, . BAC OSJNBa0085B23 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 158019

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 304    ggcgccggagctccggtggc 323
              ||||||||||||||||||||
Sbjct: 151556 ggcgccggagctccggtggc 151575


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,055,722
Number of Sequences: 3902068
Number of extensions: 2055722
Number of successful extensions: 32996
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32623
Number of HSP's gapped (non-prelim): 373
length of query: 375
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 353
effective length of database: 17,147,199,772
effective search space: 6052961519516
effective search space used: 6052961519516
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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