ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet69c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_424174.1| PREDICTED: Gallus gallus similar to bA6J24.4 (A... 40 4.7
2ref|XM_547747.2| PREDICTED: Canis familiaris similar to CG10889-... 40 4.7
3gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, comp... 40 4.7
4emb|CR352573.1| Gallus gallus finished cDNA, clone ChEST828l18 40 4.7
5gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosom... 40 4.7
6gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, compl... 40 4.7
7emb|BX072583.7| Zebrafish DNA sequence from clone CH211-185M2 in... 40 4.7
8emb|AL929200.8| Zebrafish DNA sequence from clone CH211-190B21, ... 40 4.7
9gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipie... 40 4.7
10emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 i... 40 4.7
11emb|AL928872.7| Zebrafish DNA sequence from clone DKEYP-59A2, co... 40 4.7

>ref|XM_424174.1| PREDICTED: Gallus gallus similar to bA6J24.4 (A novel protein similar
            to cell division cycle control protein 37(CDC37))
            (LOC426535), partial mRNA
          Length = 1854

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   aaagagacgaaaacagcctc 69
            ||||||||||||||||||||
Sbjct: 1121 aaagagacgaaaacagcctc 1102



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>ref|XM_547747.2| PREDICTED: Canis familiaris similar to CG10889-PA (LOC490625), mRNA
          Length = 7350

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 283  gccatggcaatgccacggca 302
            ||||||||||||||||||||
Sbjct: 2510 gccatggcaatgccacggca 2491



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>gb|AC108409.8| Mus musculus chromosome 19, clone RP23-84G7, complete sequence
          Length = 270854

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    tgaccccatgacatcactga 98
             ||||||||||||||||||||
Sbjct: 46296 tgaccccatgacatcactga 46277



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>emb|CR352573.1| Gallus gallus finished cDNA, clone ChEST828l18
          Length = 853

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 50  aaagagacgaaaacagcctc 69
           ||||||||||||||||||||
Sbjct: 755 aaagagacgaaaacagcctc 736



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>gb|AC154183.2| Mus musculus BAC clone RP23-474E16 from chromosome 17, complete sequence
          Length = 181773

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ccactgacacattattgaag 135
              ||||||||||||||||||||
Sbjct: 115626 ccactgacacattattgaag 115607



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>gb|AC012361.10| Homo sapiens BAC clone RP11-348P18 from 2, complete sequence
          Length = 207184

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 317    ccaggcaaaggctagctcaggagc 340
              |||||| |||||||||||||||||
Sbjct: 167683 ccaggccaaggctagctcaggagc 167706



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>emb|BX072583.7| Zebrafish DNA sequence from clone CH211-185M2 in linkage group 13,
             complete sequence
          Length = 154297

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   acccggaacgccactgacacatta 129
             |||||||||||| |||||||||||
Sbjct: 53274 acccggaacgcctctgacacatta 53297



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>emb|AL929200.8| Zebrafish DNA sequence from clone CH211-190B21, complete sequence
          Length = 120682

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   cactgacacattattgaagc 136
             ||||||||||||||||||||
Sbjct: 80020 cactgacacattattgaagc 80039



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>gb|AC167562.5| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940122D9, complete sequence
          Length = 114898

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   cggcacgcgcacggcgaagc 317
             ||||||||||||||||||||
Sbjct: 27551 cggcacgcgcacggcgaagc 27570



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>emb|AL954698.9| Zebrafish DNA sequence from clone CH211-233B16 in linkage group 6,
              complete sequence
          Length = 177161

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    cactgacacattattgaagc 136
              ||||||||||||||||||||
Sbjct: 166856 cactgacacattattgaagc 166875



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>emb|AL928872.7| Zebrafish DNA sequence from clone DKEYP-59A2, complete sequence
          Length = 200760

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    cactgacacattattgaagc 136
              ||||||||||||||||||||
Sbjct: 107162 cactgacacattattgaagc 107143


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,914,436
Number of Sequences: 3902068
Number of extensions: 1914436
Number of successful extensions: 30969
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30958
Number of HSP's gapped (non-prelim): 11
length of query: 355
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 333
effective length of database: 17,147,199,772
effective search space: 5710017524076
effective search space used: 5710017524076
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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