ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet69b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF250935.1|AF250935 Hordeum vulgare germin F (GerF) gene, com... 595 e-167
2gb|AF250934.1|AF250934 Hordeum vulgare germin B (GerB) gene, com... 551 e-154
3gb|AC141634.4| Mus musculus BAC clone RP24-69A18 from chromosome... 50 0.004
4gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complet... 50 0.004
5gb|AF250936.1|AF250936 Hordeum vulgare germin D (GerD) gene, com... 48 0.016
6gb|AF005084.1|AF005084 Triticum aestivum oxalate oxidase mRNA, p... 48 0.016
7gb|AC095059.3| Homo sapiens BAC clone RP11-428L21 from 4, comple... 44 0.26
8emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on... 42 1.0
9gb|AC110062.4| Homo sapiens chromosome 18, clone CTD-2125N24, co... 42 1.0
10ref|XM_480461.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.0
11ref|XM_480454.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.0
12gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complet... 40 4.0
13gb|AC135234.16| Medicago truncatula clone mth2-18a1, complete se... 40 4.0
14gb|BC008049.2| Homo sapiens hypothetical protein DKFZp761I2123, ... 40 4.0
15gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromos... 40 4.0
16emb|AJ237943.1|TAE237943 Triticum aestivum mRNA for germin-like ... 40 4.0
17emb|BX572627.5| Zebrafish DNA sequence from clone CH211-222M21 i... 40 4.0
18dbj|AK097263.1| Homo sapiens cDNA FLJ39944 fis, clone SPLEN2023423 40 4.0
19gb|AC093152.2| Homo sapiens chromosome 1 clone RP11-455P21, comp... 40 4.0
20gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, com... 40 4.0
21gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's ... 40 4.0
22gb|AC013436.5| Homo sapiens BAC clone RP11-105B9 from 7, complet... 40 4.0
23gb|AC012161.8|AC012161 Drosophila melanogaster, chromosome X, re... 40 4.0
24gb|AC011703.8|AC011703 Drosophila melanogaster, chromosome X, re... 40 4.0
25gb|AC011702.10|AC011702 Drosophila melanogaster, chromosome X, r... 40 4.0
26dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
27dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
28gb|AF250937.1|AF250937 Hordeum vulgare germin E (GerE) gene, par... 40 4.0
29dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
30dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
31dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
32dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.0
33gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 ... 40 4.0
34emb|AL935291.6| Zebrafish DNA sequence from clone CH211-226M23 i... 40 4.0 
>gb|AF250935.1|AF250935 Hordeum vulgare germin F (GerF) gene, complete cds
          Length = 2689

 Score =  595 bits (300), Expect = e-167
 Identities = 303/304 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2    caatcattgctgctttgtcattaacatcacggatctctctatatcagcaacaaggcaaag 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2668 caatcattgctgctttgtcattaacatcacggatctctctatatcagcaacaaggcaaag 2609

                                                                        
Query: 62   gagcacctctgtattccattcattaaacagggaaaacaatcatcaccaacacattctgac 121
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2608 gagcacctctgtattccattcattaaacagtgaaaacaatcatcaccaacacattctgac 2549

                                                                        
Query: 122  atgaatccgacaagaaacatatcatgtcacgcttcaaaaggaaaatgaaaattcacagct 181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2548 atgaatccgacaagaaacatatcatgtcacgcttcaaaaggaaaatgaaaattcacagct 2489

                                                                        
Query: 182  cacaaccatgcatgcatacgtattactacatgccatttattctatatactagcattacat 241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2488 cacaaccatgcatgcatacgtattactacatgccatttattctatatactagcattacat 2429

                                                                        
Query: 242  atgaactttccatatgcccagatgaaagagagtatctagtagttgttattctcccagaac 301
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 atgaactttccatatgcccagatgaaagagagtatctagtagttgttattctcccagaac 2369

                
Query: 302  tgag 305
            ||||
Sbjct: 2368 tgag 2365
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>gb|AF250934.1|AF250934 Hordeum vulgare germin B (GerB) gene, complete cds
          Length = 2798

 Score =  551 bits (278), Expect = e-154
 Identities = 299/305 (98%), Gaps = 2/305 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ccaatcattgctgctttgtcattaacatcacggatctctctatatcagcaacaaggcaaa 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2778 ccaatcattgctgctttgtcattaacatcacggatctctctatatcagcaaaaaggcaaa 2719

                                                                        
Query: 61   ggagcacctctgtattccattcattaaacagggaaaacaatcatcaccaacacattctga 120
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 2718 ggagcacctctgtattccattcattaaacagtgaaaacaatcatcaccaacacattctga 2659

                                                                        
Query: 121  catgaatccgacaagaaacatatcatgtcacgcttcaaaaggaaaatgaaaattcacagc 180
            |||||||| |||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 2658 catgaatctgacaagaaacatatcatgtcacgcttcaaaaggaaaatgaaaa--cacagc 2601

                                                                        
Query: 181  tcacaaccatgcatgcatacgtattactacatgccatttattctatatactagcattaca 240
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2600 tcacaaccatgcatgcatacgtattattacatgccatttattctatatactagcattaca 2541

                                                                        
Query: 241  tatgaactttccatatgcccagatgaaagagagtatctagtagttgttattctcccagaa 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2540 tatgaactttccatatgcccagatgaaagagagtatctagtagttgttattctcccagaa 2481

                 
Query: 301  ctgag 305
            |||||
Sbjct: 2480 ctgag 2476
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>gb|AC141634.4| Mus musculus BAC clone RP24-69A18 from chromosome 6, complete sequence
          Length = 227680

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 222   tctatatactagcattacatatgaa 246
             |||||||||||||||||||||||||
Sbjct: 55834 tctatatactagcattacatatgaa 55858
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>gb|AC122387.3| Mus musculus BAC clone RP24-76F22 from 6, complete sequence
          Length = 191058

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 222    tctatatactagcattacatatgaa 246
              |||||||||||||||||||||||||
Sbjct: 190753 tctatatactagcattacatatgaa 190777
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>gb|AF250936.1|AF250936 Hordeum vulgare germin D (GerD) gene, complete cds
          Length = 1272

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 278  tagtagttgttattctcccagaactgag 305
            ||||||||||| ||||||||||||||||
Sbjct: 1251 tagtagttgttgttctcccagaactgag 1224
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>gb|AF005084.1|AF005084 Triticum aestivum oxalate oxidase mRNA, partial cds
          Length = 837

 Score = 48.1 bits (24), Expect = 0.016
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 278 tagtagttgttattctcccagaactgag 305
           ||||||| ||||||||||||||||||||
Sbjct: 667 tagtagtggttattctcccagaactgag 640
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>gb|AC095059.3| Homo sapiens BAC clone RP11-428L21 from 4, complete sequence
          Length = 109586

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 37    tctctatatcagcaacaaggca 58
             ||||||||||||||||||||||
Sbjct: 94642 tctctatatcagcaacaaggca 94621
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>emb|AL031589.10|HS11O7 Human DNA sequence from clone RP6-11O7 on chromosome 22q13.1-13.2,
             complete sequence
          Length = 115932

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 154   ttcaaaaggaaaatgaaaatt 174
             |||||||||||||||||||||
Sbjct: 22511 ttcaaaaggaaaatgaaaatt 22491
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>gb|AC110062.4| Homo sapiens chromosome 18, clone CTD-2125N24, complete sequence
          Length = 139550

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 153   cttcaaaaggaaaatgaaaat 173
             |||||||||||||||||||||
Sbjct: 91769 cttcaaaaggaaaatgaaaat 91749
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>ref|XM_480461.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 278 tagtagttgttattctcccagaactgag 305
           ||||||| ||| ||||||||||||||||
Sbjct: 674 tagtagtggttgttctcccagaactgag 647
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>ref|XM_480454.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 675

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 278 tagtagttgttattctcccagaactgag 305
           ||||||| ||| ||||||||||||||||
Sbjct: 674 tagtagtggttgttctcccagaactgag 647
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>gb|AC012162.11| Drosophila melanogaster clone BACR01N10, complete sequence
          Length = 169856

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     tcagcaacaaggcaaaggag 64
              ||||||||||||||||||||
Sbjct: 136748 tcagcaacaaggcaaaggag 136767
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>gb|AC135234.16| Medicago truncatula clone mth2-18a1, complete sequence
          Length = 107012

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     atcattgctgctttgtcatt 23
             ||||||||||||||||||||
Sbjct: 41982 atcattgctgctttgtcatt 41963
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>gb|BC008049.2| Homo sapiens hypothetical protein DKFZp761I2123, mRNA (cDNA clone
            IMAGE:3631645), partial cds
          Length = 1958

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  aaggaaaatgaaaattcaca 178
            ||||||||||||||||||||
Sbjct: 1101 aaggaaaatgaaaattcaca 1120
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>gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromosome 15, complete
              sequence
          Length = 206618

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    ttcaaaaggaaaatgaaaat 173
              ||||||||||||||||||||
Sbjct: 154056 ttcaaaaggaaaatgaaaat 154037
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>emb|AJ237943.1|TAE237943 Triticum aestivum mRNA for germin-like protein 2b
          Length = 948

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 278 tagtagttgttattctcccagaactgag 305
           ||||||| ||| ||||||||||||||||
Sbjct: 757 tagtagtggttgttctcccagaactgag 730
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>emb|BX572627.5| Zebrafish DNA sequence from clone CH211-222M21 in linkage group 9,
              complete sequence
          Length = 209758

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 155    tcaaaaggaaaatgaaaattcaca 178
              ||||||| ||||||||||||||||
Sbjct: 170909 tcaaaagtaaaatgaaaattcaca 170886
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>dbj|AK097263.1| Homo sapiens cDNA FLJ39944 fis, clone SPLEN2023423
          Length = 1913

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 159 aaggaaaatgaaaattcaca 178
           ||||||||||||||||||||
Sbjct: 436 aaggaaaatgaaaattcaca 455
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>gb|AC093152.2| Homo sapiens chromosome 1 clone RP11-455P21, complete sequence
          Length = 151449

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   aaaaggaaaatgaaaattca 176
             ||||||||||||||||||||
Sbjct: 24994 aaaaggaaaatgaaaattca 24975
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>gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, complete sequence
          Length = 185221

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 154    ttcaaaaggaaaatgaaaat 173
              ||||||||||||||||||||
Sbjct: 128732 ttcaaaaggaaaatgaaaat 128713
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>gb|AC136037.2| Rattus norvegicus X BAC CH230-378N18 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 98442

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   ttcaaaaggaaaatgaaaat 173
             ||||||||||||||||||||
Sbjct: 18610 ttcaaaaggaaaatgaaaat 18629
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>gb|AC013436.5| Homo sapiens BAC clone RP11-105B9 from 7, complete sequence
          Length = 63823

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   aaggaaaatgaaaattcaca 178
             ||||||||||||||||||||
Sbjct: 51884 aaggaaaatgaaaattcaca 51865
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>gb|AC012161.8|AC012161 Drosophila melanogaster, chromosome X, region 16B-16D, BAC clone
              BACR01I22, complete sequence
          Length = 173281

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tcagcaacaaggcaaaggag 64
              ||||||||||||||||||||
Sbjct: 116779 tcagcaacaaggcaaaggag 116760
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>gb|AC011703.8|AC011703 Drosophila melanogaster, chromosome X, region 16A-16B, BAC clone
              BACR35P18, complete sequence
          Length = 163307

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tcagcaacaaggcaaaggag 64
              ||||||||||||||||||||
Sbjct: 153114 tcagcaacaaggcaaaggag 153095
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>gb|AC011702.10|AC011702 Drosophila melanogaster, chromosome X, region 15F-16A, BAC clone
              BACR42I14, complete sequence
          Length = 167688

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tcagcaacaaggcaaaggag 64
              ||||||||||||||||||||
Sbjct: 166760 tcagcaacaaggcaaaggag 166741
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 278     tagtagttgttattctcccagaactgag 305
               ||||||| ||| ||||||||||||||||
Sbjct: 5248885 tagtagtggttgttctcccagaactgag 5248858



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 278     tagtagttgttattctcccagaactgag 305
               ||||||| ||| ||||||||||||||||
Sbjct: 5228374 tagtagtggttgttctcccagaactgag 5228347
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 109      aacacattctgacatgaatccgac 132
                |||||||| |||||||||||||||
Sbjct: 11525221 aacacattttgacatgaatccgac 11525198
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>gb|AF250937.1|AF250937 Hordeum vulgare germin E (GerE) gene, partial cds
          Length = 783

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 278 tagtagttgttattctcccagaactgag 305
           ||||||| |||||| |||||||||||||
Sbjct: 645 tagtagtggttattttcccagaactgag 618
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>dbj|AP006054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0417E03
          Length = 133019

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 109   aacacattctgacatgaatccgac 132
             |||||||| |||||||||||||||
Sbjct: 94464 aacacattttgacatgaatccgac 94441
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>dbj|AP005852.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0414E10
          Length = 141760

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 109  aacacattctgacatgaatccgac 132
            |||||||| |||||||||||||||
Sbjct: 3107 aacacattttgacatgaatccgac 3084
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>dbj|AP005531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1099H05
          Length = 186036

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 278    tagtagttgttattctcccagaactgag 305
              ||||||| ||| ||||||||||||||||
Sbjct: 117241 tagtagtggttgttctcccagaactgag 117214



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 278   tagtagttgttattctcccagaactgag 305
             ||||||| ||| ||||||||||||||||
Sbjct: 96730 tagtagtggttgttctcccagaactgag 96703
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>dbj|AP005505.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0610E02
          Length = 135816

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 278   tagtagttgttattctcccagaactgag 305
             ||||||| ||| ||||||||||||||||
Sbjct: 40473 tagtagtggttgttctcccagaactgag 40446



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 278   tagtagttgttattctcccagaactgag 305
             ||||||| ||| ||||||||||||||||
Sbjct: 19962 tagtagtggttgttctcccagaactgag 19935
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>gb|AE003506.3| Drosophila melanogaster chromosome X, section 58 of 74 of the complete
              sequence
          Length = 302073

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     tcagcaacaaggcaaaggag 64
              ||||||||||||||||||||
Sbjct: 187956 tcagcaacaaggcaaaggag 187937
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>emb|AL935291.6| Zebrafish DNA sequence from clone CH211-226M23 in linkage group 1,
              complete sequence
          Length = 174091

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    tcaaaaggaaaatgaaaatt 174
              ||||||||||||||||||||
Sbjct: 138003 tcaaaaggaaaatgaaaatt 137984


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,872,878
Number of Sequences: 3902068
Number of extensions: 3872878
Number of successful extensions: 81948
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81800
Number of HSP's gapped (non-prelim): 147
length of query: 305
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 283
effective length of database: 17,147,199,772
effective search space: 4852657535476
effective search space used: 4852657535476
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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