>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
            (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +2

Query: 188  GKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPARAPLALEEPRRGEDEVP 352
            G+ R  R   +     RS  + A  AG+  D   G  A +P   E P++G    P
Sbjct: 2089 GRARSTRSGMDRAAHQRSLEMAARAAGQAADKEAGPAAASPQESESPQKGSGSSP 2143

>Y1615_PYRFU (Q8U0H4) UPF0027 protein PF1615 [Contains: Pfu hyp2 intein (EC|
           3.1.-.-)]
          Length = 970

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 134 DSEGDGDAQEIHEVSYELGKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPA 301
           D EGD   + +++V++ +GKV      HE  V  +   +  HR G     P GH A
Sbjct: 803 DPEGDLGMEIVYDVAHNIGKV----EEHE--VDGKKVKVIVHRKGATRAFPPGHEA 852

>TYDP1_DROME (Q9VQM4) Probable tyrosyl-DNA phosphodiesterase (EC 3.1.4.-)|
           (Tyr-DNA phosphodiesterase) (Protein glaikit)
          Length = 580

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 257 HRAGEVGDHPHGHPARAPLALEEPRRGEDEVPLV 358
           HR G V  HP GH   A L  +     +D +P+V
Sbjct: 349 HREGSVRGHPWGHARLASLLAKHAAPIDDRIPVV 382

>Y1602_PYRHO (O59245) UPF0027 protein PH1602 [Contains: Pho hyp2 intein (EC|
           3.1.-.-)]
          Length = 871

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 122 IASSDSEGDGDAQEIHEVSYELGKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPA 301
           +   D EGD     +++V++ +GKV      HE  V  +   +  HR G     P GH A
Sbjct: 700 VFKQDPEGDLGMDIVYDVAHNIGKV----EEHE--VDGKRVKVIVHRKGATRAFPPGHEA 753

>LRRC7_RAT (P70587) Leucine-rich repeat-containing protein 7 (LAP1 protein)|
            (Densin-180)
          Length = 1495

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 22/59 (37%), Positives = 26/59 (44%)
 Frame = +2

Query: 176  SYELGKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPHGHPARAPLALEEPRRGEDEVP 352
            S E+   R     HELP GDR +G  A+R G  G          P  L+   R EDE P
Sbjct: 1127 STEMAMFRRVSEPHELPPGDR-YGRAAYRGGLEGQ--SSVSMTDPQFLKRNGRYEDEHP 1182

>TBX1_MOUSE (P70323) T-box transcription factor TBX1 (T-box protein 1)|
           (Testis-specific T-box protein)
          Length = 479

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
 Frame = +2

Query: 140 EGDGDAQEIHEVSYEL----------GKVRPARRRHELPVGDRSFGLHAHRAGEVGDHPH 289
           E  G ++ +H   Y+            K RPA   + LP G R  G H H       H H
Sbjct: 388 EAPGASEPLHHHPYKYPAAAYDHYLGAKSRPAP--YPLP-GLRGHGYHPHAHPHAHPHHH 444

Query: 290 GHPARAPLA 316
            HPA  P A
Sbjct: 445 HHPAVNPAA 453

>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)|
          Length = 1518

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 248  LHAHRAGEVGDHPHGHPARAPLA 316
            LH  R GE G   HG PA  PL+
Sbjct: 1338 LHGKRRGEGGGSRHGSPASTPLS 1360

>EAA5_HUMAN (O00341) Excitatory amino acid transporter 5 (Retinal glutamate|
           transporter)
          Length = 560

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = -3

Query: 149 RLLLNLKMQCIFSSVCNNLSALSTVTLCRVQILSTSCY*W 30
           R+L  + +  +FSS+ + L++L   T  R+ +L+ + Y W
Sbjct: 59  RMLKMMILPLVFSSLMSGLASLDAKTSSRLGVLTVAYYLW 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,574,217
Number of Sequences: 219361
Number of extensions: 745144
Number of successful extensions: 1975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1956
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)