ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68h08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
2dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
3dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
4dbj|AK100034.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
5gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8... 56 1e-04
6dbj|AK106409.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
7gb|AY108381.1| Zea mays PCO088244 mRNA sequence 56 1e-04
8gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone ... 56 1e-04
9ref|XM_648008.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 46 0.095
10dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
11dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
12dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
13dbj|AK108079.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.095
14emb|AL591480.8| Human DNA sequence from clone RP11-525G3 on chro... 44 0.38
15dbj|AK073836.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
16dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
17gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone ... 44 0.38
18ref|NM_202428.1| Arabidopsis thaliana OPR1; 12-oxophytodienoate ... 42 1.5
19ref|NM_106318.3| Arabidopsis thaliana OPR1; 12-oxophytodienoate ... 42 1.5
20gb|BT020365.1| Arabidopsis thaliana At1g76680 gene, complete cds 42 1.5
21gb|AC163664.3| Mus musculus BAC clone RP23-310P18 from chromosom... 42 1.5
22emb|Y10617.1|AT12OXOPR A.thaliana mRNA for 12-oxo-phytodienoate ... 42 1.5
23gb|AY074874.1| Arabidopsis thaliana At1g76680/F28O16_5 mRNA, com... 42 1.5
24gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28... 42 1.5
25gb|AY087801.1| Arabidopsis thaliana clone 38527 mRNA, complete s... 42 1.5
26gb|U92460.1|ATU92460 Arabidopsis thaliana 12-oxophytodienoate re... 42 1.5
27gb|AC147545.3| Mus musculus BAC clone RP23-355L20 from 14, compl... 42 1.5
28dbj|AB030705.1| Lithospermum erythrorhizon mRNA for LEDI-5a prot... 42 1.5
29emb|AL772386.4| Mouse DNA sequence from clone RP23-89G22 on chro... 42 1.5
30gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7... 40 5.9
31gb|AC165353.4| Mus musculus BAC clone RP23-167C2 from chromosome... 40 5.9
32gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.9
33ref|XM_746355.1| Aspergillus fumigatus Af293 multidrug resistant... 40 5.9
34gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosom... 40 5.9
35gb|AF098985.2| Caenorhabditis elegans cosmid C08G5, complete seq... 40 5.9
36emb|AL589846.5| Human DNA sequence from clone RP11-199O16 on chr... 40 5.9
37emb|AL022151.2|HS199L16 Human DNA sequence from clone RP1-199L16... 40 5.9
38emb|AL121770.1|SPAC821 S.pombe chromosome I cosmid c821 40 5.9
39dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 5.9
40gb|AC021701.8| Homo sapiens chromosome 18, clone RP11-704G7, com... 40 5.9
41gb|AC087667.4| Homo sapiens chromosome 8, clone RP11-65D17, comp... 40 5.9
42gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence 40 5.9
43gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, r... 40 5.9
44ref|NM_061403.1| Caenorhabditis elegans C08G5.6 (C08G5.6) mRNA, ... 40 5.9
45emb|BX934911.1| Gallus gallus finished cDNA, clone ChEST150h3 40 5.9
46gb|AC000107.2|AC000107 Genomic sequence for Arabidopsis thaliana... 40 5.9
47gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, co... 40 5.9
48emb|AL845323.18| Mouse DNA sequence from clone RP23-304D11 on ch... 40 5.9
49gb|AY106967.1| Zea mays PCO088243 mRNA sequence 40 5.9
50gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 ... 40 5.9
51gb|AF009512.1|AF009512 Schizosaccharomyces pombe protein kinase ... 40 5.9
52gb|AC161251.3| Mus musculus BAC clone RP24-174C13 from chromosom... 40 5.9
53gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138... 40 5.9
54gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complet... 40 5.9
55emb|AL671733.6| Mouse DNA sequence from clone RP23-83I22 on chro... 40 5.9
56emb|AL672224.15| Mouse DNA sequence from clone RP23-360E14 on ch... 40 5.9 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                            
Query: 238      cctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgaggtcggcgta 297
                ||||| ||||||||||||||| |||||||| ||||||||  | |  || |||||||||||
Sbjct: 15167404 cctctccggcaggtcagggttggccaggaacagccgcccgtacgccaccaggtcggcgta 15167463

                                                             
Query: 298      ccccgaggagaccgccttgtccccctcttcccgatcatacccacc 342
                 ||   || |||||||||||| || || ||||| || ||||||||
Sbjct: 15167464 gccgtcggcgaccgccttgtcgccttcgtcccggtcgtacccacc 15167508
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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0043B10
          Length = 167399

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                          
Query: 238    cctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgaggtcggcgta 297
              ||||| ||||||||||||||| |||||||| ||||||||  | |  || |||||||||||
Sbjct: 139370 cctctccggcaggtcagggttggccaggaacagccgcccgtacgccaccaggtcggcgta 139429

                                                           
Query: 298    ccccgaggagaccgccttgtccccctcttcccgatcatacccacc 342
               ||   || |||||||||||| || || ||||| || ||||||||
Sbjct: 139430 gccgtcggcgaccgccttgtcgccttcgtcccggtcgtacccacc 139474
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>dbj|AP002914.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0493G01
          Length = 167587

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Plus

                                                                         
Query: 238   cctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgaggtcggcgta 297
             ||||| ||||||||||||||| |||||||| ||||||||  | |  || |||||||||||
Sbjct: 20777 cctctccggcaggtcagggttggccaggaacagccgcccgtacgccaccaggtcggcgta 20836

                                                          
Query: 298   ccccgaggagaccgccttgtccccctcttcccgatcatacccacc 342
              ||   || |||||||||||| || || ||||| || ||||||||
Sbjct: 20837 gccgtcggcgaccgccttgtcgccttcgtcccggtcgtacccacc 20881
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>dbj|AK100034.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149N02, full
            insert sequence
          Length = 2710

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 86/105 (81%)
 Strand = Plus / Minus

                                                                        
Query: 238  cctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgaggtcggcgta 297
            ||||| ||||||||||||||| |||||||| ||||||||  | |  || |||||||||||
Sbjct: 2453 cctctccggcaggtcagggttggccaggaacagccgcccgtacgccaccaggtcggcgta 2394

                                                         
Query: 298  ccccgaggagaccgccttgtccccctcttcccgatcatacccacc 342
             ||   || |||||||||||| || || ||||| || ||||||||
Sbjct: 2393 gccgtcggcgaccgccttgtcgccttcgtcccggtcgtacccacc 2349
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>gb|AY921645.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR8) mRNA, complete cds
          Length = 1529

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 152  aacgggtagtcggtgtaaccgacgacgggatcggagatgtagaacgtc 199
            ||||||||||| |||||||| ||||||||||| | | |||||||||||
Sbjct: 1269 aacgggtagtccgtgtaaccaacgacgggatccggggtgtagaacgtc 1222
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>dbj|AK106409.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-H07, full
            insert sequence
          Length = 1360

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                            
Query: 152  aacgggtagtcggtgtaaccgacgacgggatcggagatgtagaacgtc 199
            ||||||||||||||||| ||| ||||||| |||| | |||||||||||
Sbjct: 1150 aacgggtagtcggtgtagccggcgacggggtcggcggtgtagaacgtc 1103
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>gb|AY108381.1| Zea mays PCO088244 mRNA sequence
          Length = 694

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 152 aacgggtagtcggtgtaaccgacgacgggatcggagatgtagaacgtc 199
           ||||||||||| |||||||| ||||||||||| | | |||||||||||
Sbjct: 434 aacgggtagtccgtgtaaccaacgacgggatccggggtgtagaacgtc 387
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>gb|AC174930.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBa0043H01, from
             chromosome 4, complete sequence
          Length = 15426

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                             
Query: 152   aacgggtagtcggtgtaaccgacgacgggatcggagatgtagaacgtc 199
             ||||||||||||||||| ||| ||||||| |||| | |||||||||||
Sbjct: 12779 aacgggtagtcggtgtagccggcgacggggtcggcggtgtagaacgtc 12826
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>ref|XM_648008.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (94.t00028)
            partial mRNA
          Length = 1644

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 102  caatatatggatcaatcattatttatg 128
            ||||||||| |||||||||||||||||
Sbjct: 1264 caatatatgaatcaatcattatttatg 1290
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 89/111 (80%)
 Strand = Plus / Plus

                                                                           
Query: 229     gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 288
               |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 5889728 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 5889787

                                                                  
Query: 289     gtcggcgtaccccgaggagaccgccttgtccccctcttcccgatcataccc 339
               |||||| || ||   ||  |||||||||| ||| |||||||| || |||||
Sbjct: 5889788 gtcggcatagccatcggcaaccgccttgttcccttcttcccggtcgtaccc 5889838
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>dbj|AP004741.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0024N18
          Length = 128739

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 89/111 (80%)
 Strand = Plus / Plus

                                                                         
Query: 229   gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 288
             |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 11380 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 11439

                                                                
Query: 289   gtcggcgtaccccgaggagaccgccttgtccccctcttcccgatcataccc 339
             |||||| || ||   ||  |||||||||| ||| |||||||| || |||||
Sbjct: 11440 gtcggcatagccatcggcaaccgccttgttcccttcttcccggtcgtaccc 11490
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>dbj|AP003525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0537F07
          Length = 147724

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 89/111 (80%)
 Strand = Plus / Plus

                                                                         
Query: 229   gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 288
             |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 90503 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 90562

                                                                
Query: 289   gtcggcgtaccccgaggagaccgccttgtccccctcttcccgatcataccc 339
             |||||| || ||   ||  |||||||||| ||| |||||||| || |||||
Sbjct: 90563 gtcggcatagccatcggcaaccgccttgttcccttcttcccggtcgtaccc 90613
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>dbj|AK108079.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-138-E09, full
            insert sequence
          Length = 1517

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 89/111 (80%)
 Strand = Plus / Minus

                                                                        
Query: 229  gagctctagcctcttcggcaggtcagggtttgccaggaagagccgcccaaaagagacgag 288
            |||||| | |||||| ||||| ||||| || |||| |||||||| |||| | | ||||||
Sbjct: 1180 gagctcgaacctcttgggcagatcaggattcgccaagaagagcctcccataggcgacgag 1121

                                                               
Query: 289  gtcggcgtaccccgaggagaccgccttgtccccctcttcccgatcataccc 339
            |||||| || ||   ||  |||||||||| ||| |||||||| || |||||
Sbjct: 1120 gtcggcatagccatcggcaaccgccttgttcccttcttcccggtcgtaccc 1070
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>emb|AL591480.8| Human DNA sequence from clone RP11-525G3 on chromosome 6 Contains the
             3' end of the gene for CD109 (CD109) and a CpG island,
             complete sequence
          Length = 91419

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 57    tgaagagcccagaaaaagaaaa 78
             ||||||||||||||||||||||
Sbjct: 42237 tgaagagcccagaaaaagaaaa 42258
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>dbj|AK073836.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H04, full
            insert sequence
          Length = 2314

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 238  cctcttcggcaggtcagggtttgccaggaa 267
            |||| ||||||||||||| |||||||||||
Sbjct: 1981 cctcctcggcaggtcaggatttgccaggaa 1952
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>dbj|AK067218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J23, full
            insert sequence
          Length = 2420

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 238  cctcttcggcaggtcagggtttgccaggaa 267
            |||| ||||||||||||| |||||||||||
Sbjct: 2087 cctcctcggcaggtcaggatttgccaggaa 2058
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>gb|AC157500.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0056O04, from
            chromosome 4, complete sequence
          Length = 90825

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 238  cctcttcggcaggtcagggtttgccaggaa 267
            |||| ||||||||||||| |||||||||||
Sbjct: 3632 cctcctcggcaggtcaggatttgccaggaa 3661
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>ref|NM_202428.1| Arabidopsis thaliana OPR1; 12-oxophytodienoate reductase AT1G76680
            (OPR1) transcript variant AT1G76680.2 mRNA, complete cds
          Length = 1460

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 155  gggtagtcggtgtaaccgacgacgggatc 183
            ||||| ||||||||||||||||| |||||
Sbjct: 1242 gggtaatcggtgtaaccgacgactggatc 1214
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>ref|NM_106318.3| Arabidopsis thaliana OPR1; 12-oxophytodienoate reductase AT1G76680
            (OPR1) transcript variant AT1G76680.1 mRNA, complete cds
          Length = 1451

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 155  gggtagtcggtgtaaccgacgacgggatc 183
            ||||| ||||||||||||||||| |||||
Sbjct: 1233 gggtaatcggtgtaaccgacgactggatc 1205
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>gb|BT020365.1| Arabidopsis thaliana At1g76680 gene, complete cds
          Length = 1119

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 155  gggtagtcggtgtaaccgacgacgggatc 183
            ||||| ||||||||||||||||| |||||
Sbjct: 1097 gggtaatcggtgtaaccgacgactggatc 1069
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>gb|AC163664.3| Mus musculus BAC clone RP23-310P18 from chromosome 14, complete sequence
          Length = 221930

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 58     gaagagcccagaaaaagaaaa 78
              |||||||||||||||||||||
Sbjct: 117788 gaagagcccagaaaaagaaaa 117768
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>emb|Y10617.1|AT12OXOPR A.thaliana mRNA for 12-oxo-phytodienoate reductase
          Length = 1311

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 155  gggtagtcggtgtaaccgacgacgggatc 183
            ||||| ||||||||||||||||| |||||
Sbjct: 1162 gggtaatcggtgtaaccgacgactggatc 1134
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>gb|AY074874.1| Arabidopsis thaliana At1g76680/F28O16_5 mRNA, complete cds
          Length = 1252

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 155  gggtagtcggtgtaaccgacgacgggatc 183
            ||||| ||||||||||||||||| |||||
Sbjct: 1167 gggtaatcggtgtaaccgacgactggatc 1139
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>gb|AC010718.5|AC010718 Arabidopsis thaliana chromosome 1 BAC F28O16 genomic sequence, complete
             sequence
          Length = 87684

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 155   gggtagtcggtgtaaccgacgacgggatc 183
             ||||| ||||||||||||||||| |||||
Sbjct: 15021 gggtaatcggtgtaaccgacgactggatc 14993
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>gb|AY087801.1| Arabidopsis thaliana clone 38527 mRNA, complete sequence
          Length = 1280

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 155  gggtagtcggtgtaaccgacgacgggatc 183
            ||||| ||||||||||||||||| |||||
Sbjct: 1167 gggtaatcggtgtaaccgacgactggatc 1139
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>gb|U92460.1|ATU92460 Arabidopsis thaliana 12-oxophytodienoate reductase OPR1 and
            12-oxophytodienoate reductase OPR2 genes, complete cds
          Length = 7079

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 155  gggtagtcggtgtaaccgacgacgggatc 183
            ||||| ||||||||||||||||| |||||
Sbjct: 4615 gggtaatcggtgtaaccgacgactggatc 4587
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>gb|AC147545.3| Mus musculus BAC clone RP23-355L20 from 14, complete sequence
          Length = 211446

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    gaagagcccagaaaaagaaaa 78
             |||||||||||||||||||||
Sbjct: 21820 gaagagcccagaaaaagaaaa 21840
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>dbj|AB030705.1| Lithospermum erythrorhizon mRNA for LEDI-5a protein, complete cds
          Length = 1454

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 148  aagaaacgggtagtcggtgtaaccgacgacggg 180
            |||||| |||||||||||||| ||||| |||||
Sbjct: 1139 aagaaatgggtagtcggtgtagccgacaacggg 1107
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>emb|AL772386.4| Mouse DNA sequence from clone RP23-89G22 on chromosome 15, complete
             sequence
          Length = 149807

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 247   caggtcagggtttgccaggaa 267
             |||||||||||||||||||||
Sbjct: 70558 caggtcagggtttgccaggaa 70578
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>gb|AY921644.1| Zea mays 12-oxo-phytodienoic acid reductase (OPR7) mRNA, complete cds
          Length = 1594

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 157  gtagtcggtgtaaccgacgacggg 180
            |||||| |||||||||||||||||
Sbjct: 1400 gtagtccgtgtaaccgacgacggg 1377
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>gb|AC165353.4| Mus musculus BAC clone RP23-167C2 from chromosome 3, complete sequence
          Length = 198393

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    aagaaaaggttccatttgat 91
             ||||||||||||||||||||
Sbjct: 24462 aagaaaaggttccatttgat 24443
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 379    gggcagcagcctgtgcggca 398
              ||||||||||||||||||||
Sbjct: 983671 gggcagcagcctgtgcggca 983690
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>ref|XM_746355.1| Aspergillus fumigatus Af293 multidrug resistant protein
           (Afu4g13830) partial mRNA
          Length = 1527

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 346 tgcaatgaaggtgcccttgaaggc 369
           |||||||||||||||| |||||||
Sbjct: 264 tgcaatgaaggtgcccatgaaggc 241
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>gb|AC125050.6| Mus musculus BAC clone RP23-372I18 from chromosome 7, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tggttcaatgacacatcaag 146
             ||||||||||||||||||||
Sbjct: 70383 tggttcaatgacacatcaag 70364
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>gb|AF098985.2| Caenorhabditis elegans cosmid C08G5, complete sequence
          Length = 40550

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    aaaaagaaaaggttccattt 88
             ||||||||||||||||||||
Sbjct: 38262 aaaaagaaaaggttccattt 38281
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>emb|AL589846.5| Human DNA sequence from clone RP11-199O16 on chromosome 9, complete
             sequence
          Length = 44495

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 91    ttttcacatggcaatatatg 110
             ||||||||||||||||||||
Sbjct: 17566 ttttcacatggcaatatatg 17547
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>emb|AL022151.2|HS199L16 Human DNA sequence from clone RP1-199L16 on chromosome Xq22.1-22.3
             Contains a ribosomal protein S29 (RPS29) pseudogene,
             complete sequence
          Length = 134963

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    tatacatgaaaaaaccacatgtac 43
             |||||||||| |||||||||||||
Sbjct: 98860 tatacatgaagaaaccacatgtac 98883
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>emb|AL121770.1|SPAC821 S.pombe chromosome I cosmid c821
          Length = 35452

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   catcctgttgtacttattaa 218
             ||||||||||||||||||||
Sbjct: 33192 catcctgttgtacttattaa 33173
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 309     ccgccttgtccccctcttcc 328
               ||||||||||||||||||||
Sbjct: 4004811 ccgccttgtccccctcttcc 4004830
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>gb|AC021701.8| Homo sapiens chromosome 18, clone RP11-704G7, complete sequence
          Length = 170311

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     agaaaaagaaaaggttccat 86
              ||||||||||||||||||||
Sbjct: 101167 agaaaaagaaaaggttccat 101186
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>gb|AC087667.4| Homo sapiens chromosome 8, clone RP11-65D17, complete sequence
          Length = 172613

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     aagagcccagaaaaagaaaa 78
              ||||||||||||||||||||
Sbjct: 133186 aagagcccagaaaaagaaaa 133205
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>gb|AC048362.14| Mus musculus, clone RP23-105E2, complete sequence
          Length = 209211

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aaaaagaaaaggttccattt 88
             ||||||||||||||||||||
Sbjct: 84547 aaaaagaaaaggttccattt 84528
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>gb|AC092235.1|AC092235 Drosophila melanogaster, chromosome 2L, region 21E-21F, BAC clone
             BACR30G21, complete sequence
          Length = 168370

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aacgtgaagagcccagaaaa 72
             ||||||||||||||||||||
Sbjct: 73262 aacgtgaagagcccagaaaa 73243
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>ref|NM_061403.1| Caenorhabditis elegans C08G5.6 (C08G5.6) mRNA, complete cds
          Length = 921

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  aaaaagaaaaggttccattt 88
           ||||||||||||||||||||
Sbjct: 770 aaaaagaaaaggttccattt 789
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>emb|BX934911.1| Gallus gallus finished cDNA, clone ChEST150h3
          Length = 1240

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 393 gcggcaccacccgccggccg 412
           ||||||||||||||||||||
Sbjct: 72  gcggcaccacccgccggccg 53
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>gb|AC000107.2|AC000107 Genomic sequence for Arabidopsis thaliana BAC F17F8 from chromosome I,
             complete sequence
          Length = 102393

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 105   tatatggatcaatcattatttatg 128
             ||||||||| ||||||||||||||
Sbjct: 27805 tatatggatgaatcattatttatg 27828
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>gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, complete sequence
          Length = 143709

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 48     gggaaaacgtgaagagcccagaaaaaga 75
              |||||||  |||||||||||||||||||
Sbjct: 116251 gggaaaaaatgaagagcccagaaaaaga 116224
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>emb|AL845323.18| Mouse DNA sequence from clone RP23-304D11 on chromosome 2, complete
             sequence
          Length = 228137

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 374   ctgtagggcagcagcctgtg 393
             ||||||||||||||||||||
Sbjct: 68961 ctgtagggcagcagcctgtg 68980
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>gb|AY106967.1| Zea mays PCO088243 mRNA sequence
          Length = 765

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 157 gtagtcggtgtaaccgacgacggg 180
           |||||| |||||||||||||||||
Sbjct: 571 gtagtccgtgtaaccgacgacggg 548
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>gb|AE003588.3| Drosophila melanogaster chromosome 2L, section 3 of 83 of the complete
              sequence
          Length = 308447

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aacgtgaagagcccagaaaa 72
              ||||||||||||||||||||
Sbjct: 110385 aacgtgaagagcccagaaaa 110366
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>gb|AF009512.1|AF009512 Schizosaccharomyces pombe protein kinase Orb6p (orb6) gene, complete
            cds
          Length = 2344

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 199  catcctgttgtacttattaa 218
            ||||||||||||||||||||
Sbjct: 2289 catcctgttgtacttattaa 2270
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>gb|AC161251.3| Mus musculus BAC clone RP24-174C13 from chromosome 3, complete sequence
          Length = 151247

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    aagaaaaggttccatttgat 91
             ||||||||||||||||||||
Sbjct: 37228 aagaaaaggttccatttgat 37247
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>gb|AC004245.1|AC004245 Drosophila melanogaster (P1 DS03239 (D138)) DNA sequence, complete
             sequence
          Length = 79454

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    aacgtgaagagcccagaaaa 72
             ||||||||||||||||||||
Sbjct: 77739 aacgtgaagagcccagaaaa 77720
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>gb|AC150648.2| Mus musculus BAC clone RP23-235N5 from 7, complete sequence
          Length = 190414

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    tggttcaatgacacatcaag 146
              ||||||||||||||||||||
Sbjct: 156206 tggttcaatgacacatcaag 156187
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>emb|AL671733.6| Mouse DNA sequence from clone RP23-83I22 on chromosome 4, complete
              sequence
          Length = 186686

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 350    atgaaggtgcccttgaaggc 369
              ||||||||||||||||||||
Sbjct: 183740 atgaaggtgcccttgaaggc 183721
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>emb|AL672224.15| Mouse DNA sequence from clone RP23-360E14 on chromosome X, complete
             sequence
          Length = 162162

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    atgaaaaaaccacatgtaca 44
             ||||||||||||||||||||
Sbjct: 66922 atgaaaaaaccacatgtaca 66941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,308,404
Number of Sequences: 3902068
Number of extensions: 4308404
Number of successful extensions: 81991
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81790
Number of HSP's gapped (non-prelim): 196
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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