ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein... 30 1.1
2VDAC_PEA (P42054) Outer plastidial membrane protein porin (Volta... 30 1.8
3VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin ... 28 4.1
4VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Vol... 28 5.3
5VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin ... 28 6.9
6VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin ... 27 9.0

>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC) (POM 34)
          Length = 275

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -1

Query: 392 DTKALDRAPKFGLSLVLKP 336
           DTK++D+  KFGL+L LKP
Sbjct: 257 DTKSVDKGAKFGLALALKP 275



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>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 275

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = -1

Query: 392 DTKALDRAPKFGLSLVLKP 336
           DTKA++++ K GLSL LKP
Sbjct: 257 DTKAIEKSAKIGLSLALKP 275



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>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1|
           (Voltage-dependent anion-selective channel protein 1)
           (VDAC 1)
          Length = 275

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = -1

Query: 392 DTKALDRAPKFGLSLVLKP 336
           DTK++D++ K GL+L LKP
Sbjct: 257 DTKSIDKSAKVGLALALKP 275



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>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent|
           anion-selective channel protein) (VDAC)
          Length = 277

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = -1

Query: 392 DTKALDRAPKFGLSLVLK 339
           DTKA++++ K GLSLVLK
Sbjct: 259 DTKAIEKSTKVGLSLVLK 276



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>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin|
           (Voltage-dependent anion-selective channel protein)
           (VDAC)
          Length = 273

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 392 DTKALDRAPKFGLSLVLKP 336
           DTKA+D++ K G+++ LKP
Sbjct: 255 DTKAIDKSSKVGIAVALKP 273



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>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2|
           (Voltage-dependent anion-selective channel protein 2)
           (VDAC 2)
          Length = 273

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = -1

Query: 392 DTKALDRAPKFGLSLVLKP 336
           D+KA+D++ K G++L LKP
Sbjct: 255 DSKAIDKSAKVGIALALKP 273


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,180,313
Number of Sequences: 219361
Number of extensions: 1088661
Number of successful extensions: 2063
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2063
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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