ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z68320.1|CEW07A12 Caenorhabditis elegans Cosmid W07A12, comp... 42 0.84
2emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in... 40 3.3
3emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on ch... 40 3.3
4gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 3.3
5gb|AC130805.15| Medicago truncatula clone mth2-9n1, complete seq... 40 3.3
6ref|XM_692728.1| PREDICTED: Danio rerio similar to hexose-6-phos... 40 3.3
7emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chr... 40 3.3

>emb|Z68320.1|CEW07A12 Caenorhabditis elegans Cosmid W07A12, complete sequence
          Length = 16227

 Score = 42.1 bits (21), Expect = 0.84
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 163  atgtcctcaacacatactata 183
            |||||||||||||||||||||
Sbjct: 6750 atgtcctcaacacatactata 6730



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>emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in linkage group 6,
             complete sequence
          Length = 191715

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   acatttttcatacatgtcct 169
             ||||||||||||||||||||
Sbjct: 24798 acatttttcatacatgtcct 24779



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>emb|AL359694.17| Human DNA sequence from clone RP11-524C21 on chromosome 6 Contains a
            pseudogene similar to mesenchymal stem cell protein
            DSC92, complete sequence
          Length = 95369

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 42   ctaattttcagatttgattg 61
            ||||||||||||||||||||
Sbjct: 9672 ctaattttcagatttgattg 9653



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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 229     gcagcatcccgctgtttttt 248
               ||||||||||||||||||||
Sbjct: 1446406 gcagcatcccgctgtttttt 1446387



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>gb|AC130805.15| Medicago truncatula clone mth2-9n1, complete sequence
          Length = 139054

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   cacctacatttttcatacat 164
             ||||||||||||||||||||
Sbjct: 30360 cacctacatttttcatacat 30341



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>ref|XM_692728.1| PREDICTED: Danio rerio similar to hexose-6-phosphate dehydrogenase
            (glucose 1-dehydrogenase) (LOC569348), mRNA
          Length = 2740

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 150  acatttttcatacatgtcct 169
            ||||||||||||||||||||
Sbjct: 2729 acatttttcatacatgtcct 2710



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>emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chromosome X, complete
              sequence
          Length = 190433

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 175    catactataaaatcctaactgccc 198
              ||||||||||||| ||||||||||
Sbjct: 177052 catactataaaattctaactgccc 177029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,616,918
Number of Sequences: 3902068
Number of extensions: 2616918
Number of successful extensions: 46978
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46965
Number of HSP's gapped (non-prelim): 13
length of query: 257
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 235
effective length of database: 17,147,199,772
effective search space: 4029591946420
effective search space used: 4029591946420
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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