ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
114KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 56 5e-08
2CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 52 7e-07
3PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 38 0.014
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 30 2.9
5O2T11_HUMAN (Q8NH01) Olfactory receptor 2T11 (Olfactory receptor... 30 3.8
6PALI_EMENI (O93956) pH-response regulator protein palI/RIM9 29 4.9

>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 55.8 bits (133), Expect = 5e-08
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 455 CTALKANVLGIVLNIPVKLSLLLNYCGKTAPKGFQC 348
           CTA+KAN+LG  LN+P+ LSL+LN CGK  P GF+C
Sbjct: 101 CTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 52.0 bits (123), Expect = 7e-07
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = -1

Query: 455 CTALKANVLGIVLNIPVKLSLLLNYCGKTAPKGFQC 348
           CTA+KANVLGI LN+P+ L+ +LN CG+  P+ F C
Sbjct: 92  CTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTC 127



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 37.7 bits (86), Expect = 0.014
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -1

Query: 455 CTALKANVLGIVLNIPVKLSLLLNYCGKTAPKGFQC 348
           CT ++  +L I + +P+ L +L++ CGK  PK F+C
Sbjct: 308 CTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKC 343



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 455 CTALKANVLGIVLNIPVKLSLLLNYCGKTAPKGFQC 348
           C  ++   LGI LN+   L L+LN CG++ P    C
Sbjct: 43  CLCIQLRALGI-LNLNRNLQLILNSCGRSYPSNATC 77



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>O2T11_HUMAN (Q8NH01) Olfactory receptor 2T11 (Olfactory receptor OR1-65)|
          Length = 316

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = -1

Query: 425 IVLNIPVKLSLLLNYCGKTAPKGFQCA*IHLPLNQSKACMHASPVHASMHVCCYLL*SFI 246
           I +N+P        YCG  +   F C    +P     AC   S     M++CC L+   I
Sbjct: 159 ITMNVP--------YCGSRSINHFFC---EIPAVLKLACADTSLYETLMYICCVLM-LLI 206

Query: 245 PNLISSCNRSVV 210
           P  I S + S++
Sbjct: 207 PISIISTSYSLI 218



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>PALI_EMENI (O93956) pH-response regulator protein palI/RIM9|
          Length = 549

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +1

Query: 37  KQIQVLHMLNQ----TTVEAHTRTQSYVSLVRSTQPN*DKLMSPN*PVHINEHTHARTKN 204
           +Q+  + + NQ    +    ++RTQSYV   R+  P   +   PN P   N+  HAR+++
Sbjct: 454 QQLHAISIDNQHEPVSPTSLYSRTQSYVPPRRNWGPQAYQSSEPNLPYQPNQPRHARSQS 513


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,264,949
Number of Sequences: 219361
Number of extensions: 1015674
Number of successful extensions: 2098
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2096
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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