ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet68g01 |
|---|---|
| Clone Library Name | barley_pub |
>ETOL2_ARATH (Q9LV01) ETO1-like protein 2 (Ethylene overproducer 1-like protein| 2) Length = 925 Score = 31.2 bits (69), Expect = 0.63 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 11/88 (12%) Frame = +1 Query: 55 LRTKVKSSAE------YQRHHAIFHTIQKNRALR*LAWRSRCLLQACRSALPSPERPRFP 216 L +++SS+E Y +A+ ++ + LR RCLL A R A+ P + F Sbjct: 79 LYRRIESSSESEASMLYLEQYAVLRSLGDAKLLR------RCLLNARRHAIDVPCKVVFS 132 Query: 217 AWSRSPRRHPAPAG-----CSRRIQGCP 285 AW R RR G C+ CP Sbjct: 133 AWLRFFRREHELVGVESMDCNGLASECP 160
>SRP1_SCHPO (Q10193) Pre-mRNA-splicing factor srp1| Length = 275 Score = 30.8 bits (68), Expect = 0.83 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -1 Query: 275 WIRREQPAGAGCRRGERDHAGKRGRSGDGRADRHACSRHRLRHAS 141 W ++ P+G G +RG R G R GR + S H R S Sbjct: 83 WAKQPPPSGPGSKRGGRRERGGRVHGDSGRLRSRSPSPHEARSRS 127
>XRCC1_RAT (Q9ESZ0) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 631 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = +1 Query: 190 PSPERPRFPAWSRSPRRHPAPAGCSRRIQGCP 285 P+P+RP+ P SR+P PA + + G P Sbjct: 268 PAPKRPKLPVPSRTPAATPASTPAQKAVPGKP 299
>MOT6_HUMAN (O15375) Monocarboxylate transporter 6 (MCT 6) (MCT 5)| Length = 505 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +1 Query: 184 ALPSPERPRFPAWSRSPRRHPAPAGCSRRIQGCPAMIR 297 A P + R P R P PAG ++ + GCPA R Sbjct: 442 AKDGPGKQRSPEIMCQSSRQPRPAGVNKHLWGCPASSR 479
>SUV3_DROME (P20193) Protein suppressor of variegation 3-7| Length = 1250 Score = 29.3 bits (64), Expect = 2.4 Identities = 9/22 (40%), Positives = 13/22 (59%) Frame = -1 Query: 314 NTWSWRRIIAGHPWIRREQPAG 249 N ++W R + HPW+ R P G Sbjct: 293 NNFNWLRWLRWHPWLERSMPTG 314
>XRCC1_HUMAN (P18887) DNA-repair protein XRCC1 (X-ray repair cross-complementing| protein 1) Length = 633 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 196 PERPRFPAWSRSPRRHPAPAGCSRRIQGCP 285 P+RP+ PA +R+P P PA + G P Sbjct: 270 PKRPKLPAPTRTPATAPVPARAQGAVTGKP 299
>XE7_HUMAN (Q02040) B-lymphocyte antigen precursor (B-lymphocyte surface| antigen) (721P) (Protein XE7) Length = 695 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 6/47 (12%) Frame = -1 Query: 263 EQPAGAGCRRGERDHAGK-----RGRS-GDGRADRHACSRHRLRHAS 141 EQ R E+D + RGR+ GDG ADRH R R R AS Sbjct: 564 EQNVSRKDTRSEQDKCNREPSKGRGRATGDGLADRHKRERSRARRAS 610
>SCRT1_HUMAN (Q9BWW7) Transcriptional repressor scratch 1 (Scratch homolog 1| zinc finger protein) (Scratch 1) (SCRT) (hScrt) Length = 348 Score = 29.3 bits (64), Expect = 2.4 Identities = 23/63 (36%), Positives = 26/63 (41%), Gaps = 16/63 (25%) Frame = -1 Query: 266 REQPAGAGCRRGERDHAGKRGRSGDGRA---DRHAC-------------SRHRLRHASYL 135 R +G G R G R AG R+G G A RHAC SRH+ H S Sbjct: 158 RSLGSGPGGRGGTRAGAGTEARAGPGAAGAGGRHACGECGKTYATSSNLSRHKQTHRSLD 217 Query: 134 SAL 126 S L Sbjct: 218 SQL 220
>S22A4_HUMAN (Q9H015) Organic cation/carnitine transporter 1 (Solute carrier| family 22 member 4) (Ergothioneine transporter) (ET transporter) Length = 551 Score = 28.9 bits (63), Expect = 3.2 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Frame = -1 Query: 332 SSSVTGNTWSWRRII--AGHPWIRREQPAGAGCRRGERDHAGKRGRSGDGRADRHACSRH 159 S+S+ N ++ ++ AG P R P A R+++ R DGR H+CSR+ Sbjct: 26 SASIIPNGFNGMSVVFLAGTPEHRCRVPDAANLSSAWRNNSVPL-RLRDGREVPHSCSRY 84 Query: 158 RLRHASYLSAL 126 RL + SAL Sbjct: 85 RLATIANFSAL 95
>RS5_MYCPA (Q73S92) 30S ribosomal protein S5| Length = 224 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 6/35 (17%) Frame = -1 Query: 263 EQPAG------AGCRRGERDHAGKRGRSGDGRADR 177 EQPAG + RG+RD G+RG G G DR Sbjct: 3 EQPAGGQGAGDSRDSRGDRDSRGRRGDGGRGGRDR 37
>AP3D1_HUMAN (O14617) AP-3 complex subunit delta-1 (Adapter-related protein| complex 3 delta-1 subunit) (Delta-adaptin 3) (AP-3 complex delta subunit) (Delta-adaptin) Length = 1153 Score = 28.5 bits (62), Expect = 4.1 Identities = 28/98 (28%), Positives = 44/98 (44%) Frame = +1 Query: 73 SSAEYQRHHAIFHTIQKNRALR*LAWRSRCLLQACRSALPSPERPRFPAWSRSPRRHPAP 252 S +E +R A+FH ++ R + L R A E+ P + +S P+P Sbjct: 634 SESEDERPRAVFHEEEQRRPKHRPSEADEEELARRREARKQ-EQANNPFYIKSS---PSP 689 Query: 253 AGCSRRIQGCPAMIRLQLQVFPVTELDLSVMVASPGLP 366 +R Q P + + PV ++DLSV + PGLP Sbjct: 690 ---QKRYQDTPGVEHI-----PVVQIDLSVPLKVPGLP 719
>ZN646_HUMAN (O15015) Zinc finger protein 646| Length = 1829 Score = 28.1 bits (61), Expect = 5.4 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Frame = -1 Query: 326 SVTGNTWSWRRIIAGHPWIRREQPAGAGCRRGERDHAGKRGRSGD-GRADRHACS--RHR 156 S G + R+ +A H + E+ G G R+ R+ + R G GR RHA S HR Sbjct: 1261 SECGKAFRLRKQLASHQRVHMERRGGGGTRKATRE--DRPFRCGQCGRTYRHAGSLLNHR 1318 Query: 155 LRH 147 H Sbjct: 1319 RSH 1321
>BAG3_HUMAN (O95817) BAG family molecular chaperone regulator 3 (BCL-2-binding| athanogene-3) (BAG-3) (Bcl-2-binding protein Bis) (Docking protein CAIR-1) Length = 575 Score = 28.1 bits (61), Expect = 5.4 Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%) Frame = +1 Query: 82 EYQRHHAIFHTIQ----KNRALR*LAWRSRCLLQACRSALPSPERPRFPAWSRSPRR 240 EYQ H ++H IQ + R LR A R +Q S SP R P S SP R Sbjct: 239 EYQTHQPVYHKIQGDDWEPRPLR-AASPFRSSVQGASSREGSPARSSTPLHSPSPIR 294
>CWC15_ASHGO (Q750V7) Pre-mRNA-splicing factor CWC15| Length = 184 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -1 Query: 296 RIIAGHPWIRREQPAGAGCRRGERDHAGKRGRSGD 192 R++ GH ++R + GA ER+ AG R+ D Sbjct: 32 RLLPGHRTVKRRREGGATAEDEERERAGAETRTVD 66
>MSX1_SAIBB (Q2VL86) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_SAGOE (Q2VL82) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_PROVC (Q2VL76) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_PERPO (Q2VL80) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_PANTR (Q2VL88) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_MACMU (Q2VL87) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_LEPED (Q2VL77) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_LEORO (Q2VL83) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_LEMCA (Q2VL78) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_HUMAN (P28360) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| (Hox-7) Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_DAUMA (Q2VL79) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_CALJA (Q2VL84) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>MSX1_CALGO (Q2VL85) Homeobox protein MSX-1 (Msh homeobox 1-like protein)| Length = 297 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPA 255 SPE+P W +SPR P PA Sbjct: 130 SPEKPERTPWMQSPRFSPPPA 150
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 27.7 bits (60), Expect = 7.0 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 18/66 (27%) Frame = -1 Query: 269 RREQPAGAGCRRGERDHAGKRGRSG-----DGRADRHAC-------------SRHRLRHA 144 RR + G G G D G GR+G G RHAC SRH+ H Sbjct: 119 RRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGHRHACAECGKTYATSSNLSRHKQTHR 178 Query: 143 SYLSAL 126 S S L Sbjct: 179 SLDSQL 184
>MUD2_YEAST (P36084) Splicing factor MUD2| Length = 527 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/52 (32%), Positives = 25/52 (48%) Frame = -1 Query: 332 SSSVTGNTWSWRRIIAGHPWIRREQPAGAGCRRGERDHAGKRGRSGDGRADR 177 SS TG W+ +P+ R+ RRG + +RGR+G+G DR Sbjct: 110 SSHNTGPQWN------NNPYNRQRDE-----RRGRNERFDRRGRNGNGNYDR 150
>U3IP2_HUMAN (O43818) U3 small nucleolar RNA-interacting protein 2 (U3 small| nucleolar ribonucleoproptein-associated 55-kDa protein) (U3 snoRNP-associated 55-kDa protein) (U3-55K) Length = 475 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -1 Query: 254 AGAGCRRGERDHAGKRGRSGDG 189 AGAG RR + D AG RG+S G Sbjct: 21 AGAGKRRRKADSAGDRGKSKGG 42
>SECA_CAUCR (P38380) Preprotein translocase secA subunit| Length = 923 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +1 Query: 163 LLQACRSALPSPERPRFPAWSRSPRRHPAPAGCSRRIQGC 282 L A R ALP P W R+ R P P G ++ + C Sbjct: 880 LSTAQREALPVSALPE--GWDRTNRNAPCPCGSGKKFKQC 917
>TR240_HUMAN (Q9UHV7) Thyroid hormone receptor-associated protein complex 240 kDa| component (Trap240) (Thyroid hormone receptor-associated protein 1) (Vitamin D3 receptor-interacting protein complex component DRIP250) (DRIP 250) (Activator-recruited cofac Length = 2174 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/33 (51%), Positives = 18/33 (54%), Gaps = 2/33 (6%) Frame = +1 Query: 187 LPSPERPRFPAWSRSPR--RHPAPAGCSRRIQG 279 LPSP PRFP R+PR R P AG QG Sbjct: 1001 LPSPSTPRFPT-PRTPRTPRTPRGAGGPASAQG 1032
>FGF23_MOUSE (Q9EPC2) Fibroblast growth factor 23 precursor (FGF-23)| Length = 251 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%) Frame = +1 Query: 178 RSALPSPERPRFPAWSRSPRRHPAPAGCSRRI----QGCPA 288 RSA PER PR P P CSR + +G PA Sbjct: 179 RSAEDPPERDPLNVLKPRPRATPVPVSCSRELPSAEEGGPA 219
>NANO1_HUMAN (Q8WY41) Nanos homolog 1 (NOS-1) (EC_Rep1a)| Length = 292 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = +1 Query: 193 SPERPRFPAWSRSPRRHPAPAGCSRRI 273 +P R PAW+ PR H A + R+ Sbjct: 180 TPREERAPAWAAEPRLHAASGAAAARL 206
>CTDP1_MOUSE (Q7TSG2) RNA polymerase II subunit A C-terminal domain phosphatase| (EC 3.1.3.16) (TFIIF-associating CTD phosphatase) Length = 960 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/31 (51%), Positives = 16/31 (51%) Frame = -1 Query: 278 PWIRREQPAGAGCRRGERDHAGKRGRSGDGR 186 P IRREQP G GER G RG G R Sbjct: 889 PGIRREQPVGLP-SSGERSTPGMRGPRGHKR 918 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,040,603 Number of Sequences: 219361 Number of extensions: 736663 Number of successful extensions: 2794 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 2554 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2791 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
