ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing... 31 1.0
2HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing... 31 1.0

>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4836

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 164  RWGDRDAPPPGLAR 123
            +WGD+D PPPGL R
Sbjct: 1881 KWGDQDGPPPGLGR 1894



to top

>HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4834

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 164  RWGDRDAPPPGLAR 123
            +WGD+D PPPGL R
Sbjct: 1880 KWGDQDGPPPGLGR 1893


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,598,624
Number of Sequences: 219361
Number of extensions: 369606
Number of successful extensions: 932
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top