ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464478.1| Oryza sativa (japonica cultivar-group), mRNA 62 7e-07
2ref|XM_507457.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
3ref|XM_507456.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
4ref|XM_507455.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
5ref|XM_507454.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
6ref|XM_507453.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
7ref|XM_507452.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
8ref|XM_507451.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
9ref|XM_507450.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
10ref|XM_507449.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
11ref|XM_507448.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
12ref|XM_464480.1| Oryza sativa (japonica cultivar-group), mRNA 62 7e-07
13ref|XM_507447.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
14ref|XM_507446.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
15ref|XM_507445.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
16ref|XM_507444.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
17ref|XM_507443.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
18ref|XM_507442.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
19ref|XM_507441.1| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
20ref|XM_506748.2| PREDICTED Oryza sativa (japonica cultivar-group... 62 7e-07
21dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 7e-07
22dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic D... 62 7e-07
23dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic D... 62 7e-07
24dbj|AK109398.2| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
25dbj|AK119554.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
26dbj|AK106085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
27dbj|AK104557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
28dbj|AK104535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
29dbj|AK104522.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
30dbj|AK104734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
31dbj|AK104646.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
32dbj|AK104636.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
33dbj|AK104469.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
34dbj|AK104458.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
35dbj|AK104446.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
36dbj|AK104392.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
37dbj|AK104385.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
38dbj|AK104348.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
39dbj|AK104215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
40dbj|AK104096.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
41dbj|AK068102.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
42dbj|AK060970.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
43dbj|AK060143.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 7e-07
44gb|AY104614.1| Zea mays PCO084486 mRNA sequence 58 1e-05
45ref|NM_001036140.1| Arabidopsis thaliana LHCA3*1 AT1G61520 (LHCA... 46 0.043
46ref|NM_104833.2| Arabidopsis thaliana LHCA3*1; chlorophyll bindi... 46 0.043
47gb|AY093370.1| Arabidopsis thaliana PSI type III chlorophyll a/b... 46 0.043
48gb|AY059879.1| Arabidopsis thaliana PSI type III chlorophyll a/b... 46 0.043
49emb|BX813509.1|CNS0AEAC Arabidopsis thaliana Full-length cDNA Co... 46 0.043
50emb|BX815672.1|CNS0ABGC Arabidopsis thaliana Full-length cDNA Co... 46 0.043
51emb|BX814451.1|CNS0ACBS Arabidopsis thaliana Full-length cDNA Co... 46 0.043
52emb|BX813755.1|CNS0ACAQ Arabidopsis thaliana Full-length cDNA Co... 46 0.043
53emb|BX814367.1|CNS0AC2R Arabidopsis thaliana Full-length cDNA Co... 46 0.043
54emb|BX815288.1|CNS0ABIY Arabidopsis thaliana Full-length cDNA Co... 46 0.043
55emb|BX815605.1|CNS0ABBI Arabidopsis thaliana Full-length cDNA Co... 46 0.043
56gb|AY086439.1| Arabidopsis thaliana clone 25124 mRNA, complete s... 46 0.043
57gb|AC005850.1| Arabidopsis thaliana chromosome I BAC T25B24 geno... 46 0.043
58gb|U01103.1|U01103 Arabidopsis thaliana PSI type III chlorophyll... 46 0.043
59gb|AY194366.1| Vitis vinifera chlorophyll a/b binding protein (L... 44 0.17
60emb|AL589767.10| Mouse DNA sequence from clone RP23-141L16 on ch... 44 0.17
61emb|BX814384.1|CNS0AC3S Arabidopsis thaliana Full-length cDNA Co... 42 0.68
62gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, comple... 42 0.68
63gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Can... 40 2.7
64emb|CR926467.10| Zebrafish DNA sequence from clone DKEYP-20G2 in... 40 2.7
65emb|CR450794.8| Zebrafish DNA sequence from clone CH211-259I2 in... 40 2.7
66emb|Z35600.1|CEF37A8 Caenorhabditis elegans Cosmid F37A8, comple... 40 2.7
67emb|Z35601.1|CER10E9 Caenorhabditis elegans Cosmid R10E9, comple... 40 2.7
68emb|BX649366.5| Zebrafish DNA sequence from clone DKEY-16I5 in l... 40 2.7
69ref|NM_065396.2| Caenorhabditis elegans R10E9.3 (R10E9.3) mRNA, ... 40 2.7
70gb|AC159138.6| Mus musculus BAC RP23-315F23 (Roswell Park Cance... 40 2.7
71emb|AL593846.15| Mouse DNA sequence from clone RP23-171H16 on ch... 40 2.7
72emb|AJ507163.1|HEC507163 Hepatitis C virus partial gene for poly... 40 2.7 
>ref|XM_464478.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 988

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>ref|XM_507457.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1078

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>ref|XM_507456.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1121

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>ref|XM_507455.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1112

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 857 tggaacttgaggctggtgaggatgttgttgt 827
to top
>ref|XM_507454.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1121

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 866 tggaacttgaggctggtgaggatgttgttgt 836
to top
>ref|XM_507453.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1127

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 872 tggaacttgaggctggtgaggatgttgttgt 842
to top
>ref|XM_507452.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1127

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 872 tggaacttgaggctggtgaggatgttgttgt 842
to top
>ref|XM_507451.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>ref|XM_507450.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>ref|XM_507449.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>ref|XM_507448.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>ref|XM_464480.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1017

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 762 tggaacttgaggctggtgaggatgttgttgt 732
to top
>ref|XM_507447.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1145

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 890 tggaacttgaggctggtgaggatgttgttgt 860
to top
>ref|XM_507446.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1145

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 890 tggaacttgaggctggtgaggatgttgttgt 860
to top
>ref|XM_507445.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1148

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 893 tggaacttgaggctggtgaggatgttgttgt 863
to top
>ref|XM_507444.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1148

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 893 tggaacttgaggctggtgaggatgttgttgt 863
to top
>ref|XM_507443.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1151

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 896 tggaacttgaggctggtgaggatgttgttgt 866
to top
>ref|XM_507442.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1168

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 913 tggaacttgaggctggtgaggatgttgttgt 883
to top
>ref|XM_507441.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1198

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 943 tggaacttgaggctggtgaggatgttgttgt 913
to top
>ref|XM_506748.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1524_D08.28-2
           mRNA
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 873 tggaacttgaggctggtgaggatgttgttgt 843
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                              
Query: 179     tggaacttgaggctggtgaggatgttgttgt 209
               |||||||||||||||||||||||||||||||
Sbjct: 5468903 tggaacttgaggctggtgaggatgttgttgt 5468933
to top
>dbj|AP004191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1524_D08
          Length = 143046

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                             
Query: 179    tggaacttgaggctggtgaggatgttgttgt 209
              |||||||||||||||||||||||||||||||
Sbjct: 122484 tggaacttgaggctggtgaggatgttgttgt 122514
to top
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0026H03
          Length = 151827

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                            
Query: 179   tggaacttgaggctggtgaggatgttgttgt 209
             |||||||||||||||||||||||||||||||
Sbjct: 13638 tggaacttgaggctggtgaggatgttgttgt 13668
to top
>dbj|AK109398.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-A11, full
           insert sequence
          Length = 1128

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 873 tggaacttgaggctggtgaggatgttgttgt 843
to top
>dbj|AK119554.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E06, full
           insert sequence
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>dbj|AK106085.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-B02, full
           insert sequence
          Length = 1198

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 943 tggaacttgaggctggtgaggatgttgttgt 913
to top
>dbj|AK104557.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G04, full
           insert sequence
          Length = 1112

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 857 tggaacttgaggctggtgaggatgttgttgt 827
to top
>dbj|AK104535.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-E04, full
           insert sequence
          Length = 1148

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 893 tggaacttgaggctggtgaggatgttgttgt 863
to top
>dbj|AK104522.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-E10, full
           insert sequence
          Length = 1078

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>dbj|AK104734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C11, full
           insert sequence
          Length = 1121

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 866 tggaacttgaggctggtgaggatgttgttgt 836
to top
>dbj|AK104646.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-H01, full
           insert sequence
          Length = 1127

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 872 tggaacttgaggctggtgaggatgttgttgt 842
to top
>dbj|AK104636.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D09, full
           insert sequence
          Length = 1126

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 871 tggaacttgaggctggtgaggatgttgttgt 841
to top
>dbj|AK104469.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D06, full
           insert sequence
          Length = 1145

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 890 tggaacttgaggctggtgaggatgttgttgt 860
to top
>dbj|AK104458.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B05, full
           insert sequence
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>dbj|AK104446.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-B11, full
           insert sequence
          Length = 1148

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 893 tggaacttgaggctggtgaggatgttgttgt 863
to top
>dbj|AK104392.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H10, full
           insert sequence
          Length = 1151

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 896 tggaacttgaggctggtgaggatgttgttgt 866
to top
>dbj|AK104385.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-E04, full
           insert sequence
          Length = 1121

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>dbj|AK104348.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-F11, full
           insert sequence
          Length = 1145

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 890 tggaacttgaggctggtgaggatgttgttgt 860
to top
>dbj|AK104215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-H02, full
           insert sequence
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>dbj|AK104096.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B04, full
           insert sequence
          Length = 1129

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>dbj|AK068102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130I24, full
           insert sequence
          Length = 1017

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 762 tggaacttgaggctggtgaggatgttgttgt 732
to top
>dbj|AK060970.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-D07, full
           insert sequence
          Length = 1168

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 913 tggaacttgaggctggtgaggatgttgttgt 883
to top
>dbj|AK060143.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-A02, full
           insert sequence
          Length = 988

 Score = 61.9 bits (31), Expect = 7e-07
 Identities = 31/31 (100%)
 Strand = Plus / Minus

                                          
Query: 179 tggaacttgaggctggtgaggatgttgttgt 209
           |||||||||||||||||||||||||||||||
Sbjct: 874 tggaacttgaggctggtgaggatgttgttgt 844
to top
>gb|AY104614.1| Zea mays PCO084486 mRNA sequence
          Length = 1214

 Score = 58.0 bits (29), Expect = 1e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 175 ctagtggaacttgaggctggtgaggatgttgttgttg 211
           |||||||||||||||||||||||| | ||||||||||
Sbjct: 981 ctagtggaacttgaggctggtgagcacgttgttgttg 945
to top
>ref|NM_001036140.1| Arabidopsis thaliana LHCA3*1 AT1G61520 (LHCA3*1) transcript variant
            AT1G61520.2 mRNA, complete cds
          Length = 1311

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 177  agtggaacttgaggctggtgaggatgttgttgttg 211
            ||||||||||||||||||| | || ||||||||||
Sbjct: 1075 agtggaacttgaggctggtcaagacgttgttgttg 1041
to top
>ref|NM_104833.2| Arabidopsis thaliana LHCA3*1; chlorophyll binding AT1G61520
           (LHCA3*1) transcript variant AT1G61520.1 mRNA, complete
           cds
          Length = 1198

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 962 agtggaacttgaggctggtcaagacgttgttgttg 928
to top
>gb|AY093370.1| Arabidopsis thaliana PSI type III chlorophyll a/b-binding protein
           (At1g61520) mRNA, complete cds
          Length = 887

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 820 agtggaacttgaggctggtcaagacgttgttgttg 786
to top
>gb|AY059879.1| Arabidopsis thaliana PSI type III chlorophyll a/b-binding protein
           (At1g61520; T25B24.12) mRNA, complete cds
          Length = 1070

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 908 agtggaacttgaggctggtcaagacgttgttgttg 874
to top
>emb|BX813509.1|CNS0AEAC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB21ZB01 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 348

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 188 agtggaacttgaggctggtcaagacgttgttgttg 154
to top
>emb|BX815672.1|CNS0ABGC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS82ZC08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 306

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 185 agtggaacttgaggctggtcaagacgttgttgttg 151
to top
>emb|BX814451.1|CNS0ACBS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB74ZF09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 336

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 172 agtggaacttgaggctggtcaagacgttgttgttg 138
to top
>emb|BX813755.1|CNS0ACAQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB38ZE09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 408

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 244 agtggaacttgaggctggtcaagacgttgttgttg 210
to top
>emb|BX814367.1|CNS0AC2R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB6ZG03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 492

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 341 agtggaacttgaggctggtcaagacgttgttgttg 307
to top
>emb|BX815288.1|CNS0ABIY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS4ZB04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1029

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 898 agtggaacttgaggctggtcaagacgttgttgttg 864
to top
>emb|BX815605.1|CNS0ABBI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS76ZH02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 338

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 188 agtggaacttgaggctggtcaagacgttgttgttg 154
to top
>gb|AY086439.1| Arabidopsis thaliana clone 25124 mRNA, complete sequence
          Length = 1105

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 965 agtggaacttgaggctggtcaagacgttgttgttg 931
to top
>gb|AC005850.1| Arabidopsis thaliana chromosome I BAC T25B24 genomic sequence, complete
             sequence
          Length = 84432

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 177   agtggaacttgaggctggtgaggatgttgttgttg 211
             ||||||||||||||||||| | || ||||||||||
Sbjct: 70494 agtggaacttgaggctggtcaagacgttgttgttg 70528
to top
>gb|U01103.1|U01103 Arabidopsis thaliana PSI type III chlorophyll a/b-binding protein
           (Lhca3*1) mRNA, complete cds
          Length = 1054

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 177 agtggaacttgaggctggtgaggatgttgttgttg 211
           ||||||||||||||||||| | || ||||||||||
Sbjct: 898 agtggaacttgaggctggtcaagacgttgttgttg 864
to top
>gb|AY194366.1| Vitis vinifera chlorophyll a/b binding protein (Lhca3) mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 646

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 178 gtggaacttgaggctggtgaggatgttgttgttg 211
           |||||||||||||||||| | ||| |||||||||
Sbjct: 496 gtggaacttgaggctggttatgatattgttgttg 463
to top
>emb|AL589767.10| Mouse DNA sequence from clone RP23-141L16 on chromosome X, complete
             sequence
          Length = 79904

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 31    cgatataaatattacaagcatgcacg 56
             ||||||||||||||||| ||||||||
Sbjct: 74405 cgatataaatattacaaacatgcacg 74430
to top
>emb|BX814384.1|CNS0AC3S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB70ZF12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 576

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 177 agtggaacttgaggctggtgaggatgttgttgt 209
           ||||||||||||||||||| | || ||||||||
Sbjct: 453 agtggaacttgaggctggtcaagacgttgttgt 421
to top
>gb|AC009484.3| Homo sapiens BAC clone RP11-313O11 from 2, complete sequence
          Length = 206074

 Score = 42.1 bits (21), Expect = 0.68
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 34   tataaatattacaagcatgca 54
            |||||||||||||||||||||
Sbjct: 8443 tataaatattacaagcatgca 8463
to top
>gb|AC153622.11| Mus musculus 6 BAC RP23-301N17 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 195335

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   tggaacttgaggctggtgag 198
             ||||||||||||||||||||
Sbjct: 62923 tggaacttgaggctggtgag 62904
to top
>emb|CR926467.10| Zebrafish DNA sequence from clone DKEYP-20G2 in linkage group 5,
             complete sequence
          Length = 153796

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    atataaatattacaagcatg 52
             ||||||||||||||||||||
Sbjct: 13541 atataaatattacaagcatg 13560
to top
>emb|CR450794.8| Zebrafish DNA sequence from clone CH211-259I2 in linkage group 14,
              complete sequence
          Length = 176875

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     atataaatattacaagcatg 52
              ||||||||||||||||||||
Sbjct: 174328 atataaatattacaagcatg 174347
to top
>emb|Z35600.1|CEF37A8 Caenorhabditis elegans Cosmid F37A8, complete sequence
          Length = 35081

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   aggacgacgatgctcggatt 170
             ||||||||||||||||||||
Sbjct: 34546 aggacgacgatgctcggatt 34565
to top
>emb|Z35601.1|CER10E9 Caenorhabditis elegans Cosmid R10E9, complete sequence
          Length = 21120

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 aggacgacgatgctcggatt 170
           ||||||||||||||||||||
Sbjct: 44  aggacgacgatgctcggatt 63
to top
>emb|BX649366.5| Zebrafish DNA sequence from clone DKEY-16I5 in linkage group 12,
             complete sequence
          Length = 222310

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    gtacaaatttacattttaca 84
             ||||||||||||||||||||
Sbjct: 83705 gtacaaatttacattttaca 83686
to top
>ref|NM_065396.2| Caenorhabditis elegans R10E9.3 (R10E9.3) mRNA, complete cds
          Length = 528

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 151 aggacgacgatgctcggatt 170
           ||||||||||||||||||||
Sbjct: 70  aggacgacgatgctcggatt 89
to top
>gb|AC159138.6| Mus musculus  BAC RP23-315F23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 180124

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    tggaacttgaggctggtgag 198
              ||||||||||||||||||||
Sbjct: 148953 tggaacttgaggctggtgag 148934
to top
>emb|AL593846.15| Mouse DNA sequence from clone RP23-171H16 on chromosome 11, complete
              sequence
          Length = 213263

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 185    ttgaggctggtgaggatgtt 204
              ||||||||||||||||||||
Sbjct: 192135 ttgaggctggtgaggatgtt 192116
to top
>emb|AJ507163.1|HEC507163 Hepatitis C virus partial gene for polyprotein, genomic RNA, isolate
            ETR9
          Length = 1341

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gaggctggtgaggatgttgt 206
            ||||||||||||||||||||
Sbjct: 1315 gaggctggtgaggatgttgt 1334


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,360,253
Number of Sequences: 3902068
Number of extensions: 2360253
Number of successful extensions: 141617
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 141445
Number of HSP's gapped (non-prelim): 172
length of query: 211
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 189
effective length of database: 17,147,199,772
effective search space: 3240820756908
effective search space used: 3240820756908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top