ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet68c04 |
|---|---|
| Clone Library Name | barley_pub |
>PHF2_HUMAN (O75151) PHD finger protein 2 (GRC5)| Length = 1101 Score = 29.6 bits (65), Expect = 2.1 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -1 Query: 111 VKCVTRSMHVITRFMQECNHCR-WCYAVC 28 V CV R + +TRFM EC+ C+ W + C Sbjct: 6 VYCVCRLPYDVTRFMIECDACKDWFHGSC 34
>PHF2_MOUSE (Q9WTU0) PHD finger protein 2 (GRC5)| Length = 1096 Score = 29.6 bits (65), Expect = 2.1 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -1 Query: 111 VKCVTRSMHVITRFMQECNHCR-WCYAVC 28 V CV R + +TRFM EC+ C+ W + C Sbjct: 6 VYCVCRLPYDVTRFMIECDACKDWFHGSC 34
>CIT2_ECOLI (P05853) Citrate utilization protein B| Length = 379 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -1 Query: 141 LNKMHGRIAAVKCVTRSMHVITRFMQECNHCRWCYAVC 28 + ++ I K +T + R MQ CN CR+C C Sbjct: 1 MKQLEKLIIEAKILTEPEAEVERVMQVCNACRYCEGFC 38
>OTRF1_STAAW (Q7A1B1) Putative O-acetyltransferase MW0856 (EC 2.3.1.-)| Length = 604 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 84 HALIWLHTSLLQYVHASYLGRYIDVYVYSIHVTL 185 ++L H +++ +VH+ Y+ I VYVY I ++L Sbjct: 310 YSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISL 343
>OTRF1_STAAS (Q6GAV2) Putative O-acetyltransferase SAS0844 (EC 2.3.1.-)| Length = 604 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 84 HALIWLHTSLLQYVHASYLGRYIDVYVYSIHVTL 185 ++L H +++ +VH+ Y+ I VYVY I ++L Sbjct: 310 YSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISL 343
>OTRF1_STAAR (Q6GIB3) Putative O-acetyltransferase SAR0937 (EC 2.3.1.-)| Length = 604 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 84 HALIWLHTSLLQYVHASYLGRYIDVYVYSIHVTL 185 ++L H +++ +VH+ Y+ I VYVY I ++L Sbjct: 310 YSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISL 343
>OTRF1_STAAN (Q7A6G7) Putative O-acetyltransferase SA0834 (EC 2.3.1.-)| Length = 604 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 84 HALIWLHTSLLQYVHASYLGRYIDVYVYSIHVTL 185 ++L H +++ +VH+ Y+ I VYVY I ++L Sbjct: 310 YSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISL 343
>OTRF1_STAAM (Q99VB6) Putative O-acetyltransferase SAV0974 (EC 2.3.1.-)| Length = 604 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 84 HALIWLHTSLLQYVHASYLGRYIDVYVYSIHVTL 185 ++L H +++ +VH+ Y+ I VYVY I ++L Sbjct: 310 YSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISL 343
>OTRF1_STAAC (Q5HHB1) Putative O-acetyltransferase SACOL0978 (EC 2.3.1.-)| Length = 604 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/34 (35%), Positives = 22/34 (64%) Frame = +3 Query: 84 HALIWLHTSLLQYVHASYLGRYIDVYVYSIHVTL 185 ++L H +++ +VH+ Y+ I VYVY I ++L Sbjct: 310 YSLYLWHFAVISFVHSYYVDGQIPVYVYFIDISL 343
>K1718_MOUSE (Q3UWM4) Protein KIAA1718| Length = 940 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -1 Query: 111 VKCVTRSMHVITRFMQECNHCR-WCYAVC 28 V CV R + + RFM EC+ C+ W + C Sbjct: 38 VYCVCRQPYDVNRFMIECDVCKDWFHGSC 66
>PHF8_MOUSE (Q80TJ7) PHD finger protein 8| Length = 1023 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -1 Query: 111 VKCVTRSMHVITRFMQECNHCR-WCYAVC 28 V C+ R + +TRFM EC+ C+ W + C Sbjct: 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSC 34
>CT1AA_BACTM (P0A383) Type-1Aa cytolytic delta-endotoxin (27 kDa cytolytic| tocin) Length = 249 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -3 Query: 163 TYTSIYRPK*DAWTYCSSEVCNQINACHNTIHA 65 T+T++ K +AW + E NQ N +N + A Sbjct: 146 TFTNLNTQKNEAWIFWGKETANQTNYTYNVLFA 178
>CT1AA_BACTI (P0A382) Type-1Aa cytolytic delta-endotoxin (27 kDa cytolytic| tocin) Length = 249 Score = 28.1 bits (61), Expect = 6.1 Identities = 11/33 (33%), Positives = 18/33 (54%) Frame = -3 Query: 163 TYTSIYRPK*DAWTYCSSEVCNQINACHNTIHA 65 T+T++ K +AW + E NQ N +N + A Sbjct: 146 TFTNLNTQKNEAWIFWGKETANQTNYTYNVLFA 178
>PHF8_HUMAN (Q9UPP1) PHD finger protein 8| Length = 1060 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -1 Query: 111 VKCVTRSMHVITRFMQECNHCR-WCYAVC 28 V C+ R + +TRFM EC+ C+ W + C Sbjct: 42 VYCLCRLPYDVTRFMIECDMCQDWFHGSC 70
>K1718_HUMAN (Q6ZMT4) Protein KIAA1718| Length = 941 Score = 28.1 bits (61), Expect = 6.1 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = -1 Query: 111 VKCVTRSMHVITRFMQECNHCR-WCYAVC 28 V CV R + + RFM EC+ C+ W + C Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSC 66
>MPRF_STAXY (Q93QY7) Probable lysylphosphatidylglycerol synthetase (LPG| synthetase) (Multiple peptide resistance factor) Length = 841 Score = 27.7 bits (60), Expect = 8.0 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Frame = +3 Query: 87 ALIWLHTSLLQYVH---ASYLGRYI-DVYVYSIHVTLHSCIIRSLFITVLG 227 AL+ L TSL+ +++ Y G Y + Y+Y I V++H+C L + V+G Sbjct: 339 ALLLLFTSLVFFLNNLTIIYDGLYDPNHYIYYIIVSIHTCACLLLLLNVIG 389 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,328,910 Number of Sequences: 219361 Number of extensions: 588280 Number of successful extensions: 1282 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1251 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1282 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
