ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113224.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 38 4.5
2gb|BT011187.1| Drosophila melanogaster RE05729 full insert cDNA 38 4.5
3gb|DQ353260.1| Cryptopone gilva voucher RA0352 long-wavelength r... 38 4.5
4gb|DQ353249.1| Heteroponera microps voucher RA0384 long-waveleng... 38 4.5
5gb|DQ353225.1| Myrmica incompleta voucher RA0229 long-wavelength... 38 4.5
6ref|NM_169935.1| Drosophila melanogaster CG31191-RA (CG31191), mRNA 38 4.5
7gb|AC093019.2| Homo sapiens chromosome 1 clone RP4-714D9, comple... 38 4.5
8gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A... 38 4.5
9gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, r... 38 4.5
10gb|AY703763.1| Myrmica tahoensis long-wavelength rhodopsin (LW R... 38 4.5
11gb|AY703759.1| Cerapachys larvatus long-wavelength rhodopsin (LW... 38 4.5
12gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70... 38 4.5
13emb|AL807377.10| Zebrafish DNA sequence from clone CH211-229G3, ... 38 4.5
14emb|AL663037.13| Mouse DNA sequence from clone RP23-103K12 on ch... 38 4.5 
>gb|AC113224.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-99C24, complete
              sequence
          Length = 198436

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 66     gaatcctgtctgatatata 84
              |||||||||||||||||||
Sbjct: 118254 gaatcctgtctgatatata 118236
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>gb|BT011187.1| Drosophila melanogaster RE05729 full insert cDNA
          Length = 4431

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    tctgacatatctgaatata 19
            |||||||||||||||||||
Sbjct: 3303 tctgacatatctgaatata 3321
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>gb|DQ353260.1| Cryptopone gilva voucher RA0352 long-wavelength rhodopsin (LR)
           gene, partial cds
          Length = 523

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 29  gtacagctcacagaagaagggtc 51
           |||||| ||||||||||||||||
Sbjct: 349 gtacagttcacagaagaagggtc 327
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>gb|DQ353249.1| Heteroponera microps voucher RA0384 long-wavelength rhodopsin (LR)
           gene, partial cds
          Length = 524

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 29  gtacagctcacagaagaagggtc 51
           |||||| ||||||||||||||||
Sbjct: 350 gtacagttcacagaagaagggtc 328
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>gb|DQ353225.1| Myrmica incompleta voucher RA0229 long-wavelength rhodopsin (LR)
           gene, partial cds
          Length = 543

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 29  gtacagctcacagaagaagggtc 51
           ||||||||||||||| |||||||
Sbjct: 369 gtacagctcacagaacaagggtc 347
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>ref|NM_169935.1| Drosophila melanogaster CG31191-RA (CG31191), mRNA
          Length = 4432

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1    tctgacatatctgaatata 19
            |||||||||||||||||||
Sbjct: 3320 tctgacatatctgaatata 3338
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>gb|AC093019.2| Homo sapiens chromosome 1 clone RP4-714D9, complete sequence
          Length = 116911

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    atatatcgagttcagtaca 33
             |||||||||||||||||||
Sbjct: 59637 atatatcgagttcagtaca 59619
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>gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A15, complete sequence
          Length = 193254

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    acagaagaagggtcaattt 56
             |||||||||||||||||||
Sbjct: 75925 acagaagaagggtcaattt 75943
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>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone
            BACR05I01, complete sequence
          Length = 187151

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 1    tctgacatatctgaatata 19
            |||||||||||||||||||
Sbjct: 8287 tctgacatatctgaatata 8269
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>gb|AY703763.1| Myrmica tahoensis long-wavelength rhodopsin (LW Rh) gene, partial
           cds
          Length = 544

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 29  gtacagctcacagaagaagggtc 51
           ||||||||||||||| |||||||
Sbjct: 369 gtacagctcacagaacaagggtc 347
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>gb|AY703759.1| Cerapachys larvatus long-wavelength rhodopsin (LW Rh) gene, partial
           cds
          Length = 535

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 29  gtacagctcacagaagaagggtc 51
           |||||| ||||||||||||||||
Sbjct: 360 gtacagttcacagaagaagggtc 338
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>gb|AE003732.3| Drosophila melanogaster chromosome 3R, section 70 of 118 of the complete
              sequence
          Length = 224529

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 1      tctgacatatctgaatata 19
              |||||||||||||||||||
Sbjct: 156619 tctgacatatctgaatata 156601
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>emb|AL807377.10| Zebrafish DNA sequence from clone CH211-229G3, complete sequence
          Length = 170231

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    gtacagctcacagaagaag 47
             |||||||||||||||||||
Sbjct: 84788 gtacagctcacagaagaag 84806
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>emb|AL663037.13| Mouse DNA sequence from clone RP23-103K12 on chromosome 4, complete
              sequence
          Length = 246021

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 67     aatcctgtctgatatatag 85
              |||||||||||||||||||
Sbjct: 196627 aatcctgtctgatatatag 196609


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 721,545
Number of Sequences: 3902068
Number of extensions: 721545
Number of successful extensions: 46176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46160
Number of HSP's gapped (non-prelim): 16
length of query: 101
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 80
effective length of database: 17,151,101,840
effective search space: 1372088147200
effective search space used: 1372088147200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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