ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68c02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X70881.1|HVMYB3G H.vulgare myb3 gene 178 1e-41
2dbj|AB252145.1| Triticum aestivum Tamyb2 mRNA for myb-related pr... 176 4e-41
3emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 170 2e-39
4ref|NM_192221.1| Oryza sativa (japonica cultivar-group), predic... 58 2e-05
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
6dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
7dbj|AK111782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
8dbj|AB252150.1| Triticum aestivum Tamyb12 mRNA for myb-related p... 52 0.002
9gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.024
10gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome... 48 0.024
11dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.024
12gb|AF111710.1|AF111710 Oryza sativa subsp. indica putative dnaJ-... 48 0.024
13ref|NM_201094.1| Danio rerio zgc:56608 (zgc:56608), mRNA 42 1.5
14ref|XM_478379.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
15gb|BC049504.1| Danio rerio zgc:56608, mRNA (cDNA clone MGC:56608... 42 1.5
16emb|CR361569.11| Zebrafish DNA sequence from clone CH211-99I20 i... 42 1.5
17gb|AC090512.3|AC090512 Homo sapiens chromosome 15 clone RP11-134... 42 1.5
18gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640... 42 1.5
19dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
20dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.5
21dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
22dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
23dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
24dbj|AK119451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
25ref|XM_321235.2| Anopheles gambiae str. PEST ENSANGP00000008413 ... 42 1.5
26dbj|AK106227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
27dbj|AK101410.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
28emb|CR925805.14| Zebrafish DNA sequence from clone DKEY-99N20 in... 42 1.5
29emb|AL670660.8| Mouse DNA sequence from clone RP23-265D6 on chro... 42 1.5
30gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, com... 40 5.7
31gb|AC154425.2| Mus musculus BAC clone RP24-196O13 from chromosom... 40 5.7
32gb|AC113720.6| Rattus norvegicus 1 BAC CH230-117B1 (Children's H... 40 5.7
33ref|XM_462248.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.7
34gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 5.7
35gb|AC125781.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
36gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.7
37ref|XM_978703.1| PREDICTED: Mus musculus potassium channel tetra... 40 5.7
38ref|XM_977929.1| PREDICTED: Mus musculus potassium channel tetra... 40 5.7
39ref|XM_980194.1| PREDICTED: Mus musculus potassium channel tetra... 40 5.7
40gb|AC133191.3| Mus musculus chromosome 18 clone RP23-390K15, com... 40 5.7
41emb|CT026474.3| Macaca mulatta chromosome 9 BAC CH250-270M9, com... 40 5.7
42emb|CR956619.7| M.truncatula DNA sequence from clone MTH2-65F22 ... 40 5.7
43gb|AC124682.4| Mus musculus BAC clone RP24-336O24 from chromosom... 40 5.7
44gb|AC125091.3| Mus musculus BAC clone RP24-165P5 from chromosome... 40 5.7
45ref|XM_741081.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 5.7
46gb|AC113528.8| Mus musculus chromosome 18, clone RP23-419F17, co... 40 5.7
47gb|AC161876.3| Mus musculus BAC clone RP24-388H6 from chromosome... 40 5.7
48emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS... 40 5.7
49gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome... 40 5.7
50emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chr... 40 5.7
51gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, com... 40 5.7
52gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cance... 40 5.7
53gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Canc... 40 5.7
54gb|AC008008.2| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Can... 40 5.7
55ref|NM_024273.1| Mus musculus RIKEN cDNA 4930455C21 gene (493045... 40 5.7
56emb|CR523546.1| Gallus gallus finished cDNA, clone ChEST860p24 40 5.7
57emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chr... 40 5.7
58dbj|AK081781.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 40 5.7
59dbj|AK054557.1| Mus musculus 10 days neonate olfactory brain cDN... 40 5.7
60gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.7
61dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
62dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
63gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, com... 40 5.7
64gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, comple... 40 5.7
65gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.7
66gb|AC128714.15| Homo sapiens 3 BAC RP11-433C9 (Roswell Park Canc... 40 5.7
67emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on ch... 40 5.7
68ref|XM_314285.2| Anopheles gambiae str. PEST ENSANGP00000001136 ... 40 5.7
69gb|BC002243.1| Mus musculus RIKEN cDNA 4930455C21 gene, mRNA (cD... 40 5.7
70gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
71emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chr... 40 5.7
72emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, comp... 40 5.7
73gb|AC139299.3| Mus musculus BAC clone RP23-335D20 from 1, comple... 40 5.7
74emb|BX000464.8| Mouse DNA sequence from clone RP23-166A1 on chro... 40 5.7
75emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on ch... 40 5.7
76emb|CT027657.3| Macaca mulatta chromosome 9 BAC CH250-255J18, co... 40 5.7
77emb|AL844556.4| Mouse DNA sequence from clone RP23-21N12 on chro... 40 5.7 
>emb|X70881.1|HVMYB3G H.vulgare myb3 gene
          Length = 3241

 Score =  178 bits (90), Expect = 1e-41
 Identities = 90/90 (100%)
 Strand = Plus / Minus

                                                                        
Query: 339  ctccgccttggcccagtgcggcacctcgccgtccagcacgctgcccacctcgccgccgta 398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1998 ctccgccttggcccagtgcggcacctcgccgtccagcacgctgcccacctcgccgccgta 1939

                                          
Query: 399  gttccagttgctgctgttgctcgagctctc 428
            ||||||||||||||||||||||||||||||
Sbjct: 1938 gttccagttgctgctgttgctcgagctctc 1909
to top
>dbj|AB252145.1| Triticum aestivum Tamyb2 mRNA for myb-related protein, complete cds
          Length = 1010

 Score =  176 bits (89), Expect = 4e-41
 Identities = 98/101 (97%)
 Strand = Plus / Minus

                                                                       
Query: 324 gtgctgccgctccatctccgccttggcccagtgcggcacctcgccgtccagcacgctgcc 383
           ||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 893 gtgctgctgctccatctccgccttgccccagtgcggcacctcgccgtcgagcacgctgcc 834

                                                    
Query: 384 cacctcgccgccgtagttccagttgctgctgttgctcgagc 424
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 cacctcgccgccgtagttccagttgctgctgttgctcgagc 793
to top
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
          Length = 1270

 Score =  170 bits (86), Expect = 2e-39
 Identities = 89/90 (98%)
 Strand = Plus / Minus

                                                                       
Query: 339 ctccgccttggcccagtgcggcacctcgccgtccagcacgctgcccacctcgccgccgta 398
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctccggcttggcccagtgcggcacctcgccgtccagcacgctgcccacctcgccgccgta 785

                                         
Query: 399 gttccagttgctgctgttgctcgagctctc 428
           ||||||||||||||||||||||||||||||
Sbjct: 784 gttccagttgctgctgttgctcgagctctc 755
to top
>ref|NM_192221.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 909

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 392 cgccgtagttccagttgctgctgttgctcgagctctc 428
           ||||| |||||||||||||||||||||| ||||||||
Sbjct: 688 cgccgcagttccagttgctgctgttgctggagctctc 652
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                     
Query: 392      cgccgtagttccagttgctgctgttgctcgagctctc 428
                ||||| |||||||||||||||||||||| ||||||||
Sbjct: 29125979 cgccgcagttccagttgctgctgttgctggagctctc 29126015
to top
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0421H07
          Length = 158126

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 392   cgccgtagttccagttgctgctgttgctcgagctctc 428
             ||||| |||||||||||||||||||||| ||||||||
Sbjct: 86345 cgccgcagttccagttgctgctgttgctggagctctc 86381
to top
>dbj|AK111782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084H22, full
           insert sequence
          Length = 1514

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 392 cgccgtagttccagttgctgctgttgctcgagctctc 428
           ||||| |||||||||||||||||||||| ||||||||
Sbjct: 965 cgccgcagttccagttgctgctgttgctggagctctc 929
to top
>dbj|AB252150.1| Triticum aestivum Tamyb12 mRNA for myb-related protein, partial cds
          Length = 858

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 399 gttccagttgctgctgttgctcgagctctc 428
           ||||||||||||||||||||| ||||||||
Sbjct: 369 gttccagttgctgctgttgctggagctctc 340
to top
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
             complete sequence
          Length = 122120

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 401   tccagttgctgctgttgctcgagctctc 428
             ||||||||||||||||||| ||||||||
Sbjct: 63722 tccagttgctgctgttgctggagctctc 63695
to top
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
             complete sequence
          Length = 115026

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 401   tccagttgctgctgttgctcgagctctc 428
             ||||||||||||||||||| ||||||||
Sbjct: 20023 tccagttgctgctgttgctggagctctc 19996
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 401      tccagttgctgctgttgctcgagctctc 428
                ||||||||||||||||||| ||||||||
Sbjct: 26781783 tccagttgctgctgttgctggagctctc 26781756
to top
>gb|AF111710.1|AF111710 Oryza sativa subsp. indica putative dnaJ-like protein, putative
             myb-related protein, putative farnesyl pyrophosphate
             synthase, and hypothetical protein genes, complete cds
          Length = 43422

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 401   tccagttgctgctgttgctcgagctctc 428
             ||||||||||||||||||| ||||||||
Sbjct: 12310 tccagttgctgctgttgctggagctctc 12337
to top
>ref|NM_201094.1| Danio rerio zgc:56608 (zgc:56608), mRNA
          Length = 1347

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  aaaaatgaagggagaaagtag 201
            |||||||||||||||||||||
Sbjct: 1045 aaaaatgaagggagaaagtag 1025
to top
>ref|XM_478379.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3184

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 377 cgctgcccacctcgccgccgt 397
           |||||||||||||||||||||
Sbjct: 556 cgctgcccacctcgccgccgt 576
to top
>gb|BC049504.1| Danio rerio zgc:56608, mRNA (cDNA clone MGC:56608 IMAGE:5915434),
            complete cds
          Length = 1347

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 181  aaaaatgaagggagaaagtag 201
            |||||||||||||||||||||
Sbjct: 1045 aaaaatgaagggagaaagtag 1025
to top
>emb|CR361569.11| Zebrafish DNA sequence from clone CH211-99I20 in linkage group 8,
             complete sequence
          Length = 97203

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 18    tttcatatatttgtacaaatt 38
             |||||||||||||||||||||
Sbjct: 39994 tttcatatatttgtacaaatt 39974
to top
>gb|AC090512.3|AC090512 Homo sapiens chromosome 15 clone RP11-134K12 map 15q21.1, complete
              sequence
          Length = 161737

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 152    gctttaatggtgtgacccttg 172
              |||||||||||||||||||||
Sbjct: 158093 gctttaatggtgtgacccttg 158073
to top
>gb|AC091074.3|AC091074 Homo sapiens chromosome 15 clone RP11-640I2 map 15q21.1, complete
             sequence
          Length = 161083

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 152   gctttaatggtgtgacccttg 172
             |||||||||||||||||||||
Sbjct: 24031 gctttaatggtgtgacccttg 24011
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 179      ataaaaatgaagggagaaagt 199
                |||||||||||||||||||||
Sbjct: 24179950 ataaaaatgaagggagaaagt 24179930



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 377      cgctgcccacctcgccgccgt 397
                |||||||||||||||||||||
Sbjct: 19615357 cgctgcccacctcgccgccgt 19615377
to top
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 374     gcacgctgcccacctcgccgc 394
               |||||||||||||||||||||
Sbjct: 3223026 gcacgctgcccacctcgccgc 3223046
to top
>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0580A11
          Length = 174673

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 377    cgctgcccacctcgccgccgt 397
              |||||||||||||||||||||
Sbjct: 158701 cgctgcccacctcgccgccgt 158721
to top
>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 377   cgctgcccacctcgccgccgt 397
             |||||||||||||||||||||
Sbjct: 54007 cgctgcccacctcgccgccgt 54027
to top
>dbj|AP003846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1710_H11
          Length = 136107

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 179    ataaaaatgaagggagaaagt 199
              |||||||||||||||||||||
Sbjct: 113365 ataaaaatgaagggagaaagt 113345
to top
>dbj|AK119451.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D09, full
           insert sequence
          Length = 3751

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 377 cgctgcccacctcgccgccgt 397
           |||||||||||||||||||||
Sbjct: 555 cgctgcccacctcgccgccgt 575
to top
>ref|XM_321235.2| Anopheles gambiae str. PEST ENSANGP00000008413 (ENSANGG00000006335),
            partial mRNA
          Length = 5847

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 325  tgctgccgctccatctccgcc 345
            |||||||||||||||||||||
Sbjct: 1130 tgctgccgctccatctccgcc 1110
to top
>dbj|AK106227.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A09, full
           insert sequence
          Length = 2144

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 377 cgctgcccacctcgccgccgt 397
           |||||||||||||||||||||
Sbjct: 560 cgctgcccacctcgccgccgt 580
to top
>dbj|AK101410.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037I20, full
           insert sequence
          Length = 3184

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 377 cgctgcccacctcgccgccgt 397
           |||||||||||||||||||||
Sbjct: 556 cgctgcccacctcgccgccgt 576
to top
>emb|CR925805.14| Zebrafish DNA sequence from clone DKEY-99N20 in linkage group 16,
             complete sequence
          Length = 180576

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 181   aaaaatgaagggagaaagtag 201
             |||||||||||||||||||||
Sbjct: 69243 aaaaatgaagggagaaagtag 69223
to top
>emb|AL670660.8| Mouse DNA sequence from clone RP23-265D6 on chromosome X, complete
              sequence
          Length = 181805

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 222    aaagaaagaaaaagatcagaa 242
              |||||||||||||||||||||
Sbjct: 145532 aaagaaagaaaaagatcagaa 145552
to top
>gb|AC116476.6| Mus musculus chromosome 15, clone RP23-387K7, complete sequence
          Length = 198541

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 181   aaaaatgaagggagaaagta 200
             ||||||||||||||||||||
Sbjct: 49588 aaaaatgaagggagaaagta 49607
to top
>gb|AC154425.2| Mus musculus BAC clone RP24-196O13 from chromosome 16, complete sequence
          Length = 161700

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaagaaagaaaaagatcaga 241
              ||||||||||||||||||||
Sbjct: 148731 aaagaaagaaaaagatcaga 148712
to top
>gb|AC113720.6| Rattus norvegicus 1 BAC CH230-117B1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 249629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    aaagaaagaaaaagatcaga 241
              ||||||||||||||||||||
Sbjct: 223188 aaagaaagaaaaagatcaga 223207
to top
>ref|XM_462248.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0G17270g)
            partial mRNA
          Length = 2166

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 4    tcctgcaatttcgatttcat 23
            ||||||||||||||||||||
Sbjct: 1317 tcctgcaatttcgatttcat 1298
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 359     gcacctcgccgtccagcacg 378
               ||||||||||||||||||||
Sbjct: 1762883 gcacctcgccgtccagcacg 1762864
to top
>gb|AC125781.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0058G18, complete sequence
          Length = 175397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 350   cccagtgcggcacctcgccgtcca 373
             ||||||||| ||||||||||||||
Sbjct: 50521 cccagtgcgccacctcgccgtcca 50498
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 230     aaaaagatcagaagtattgttcca 253
               |||||||||||| |||||||||||
Sbjct: 9579030 aaaaagatcagaggtattgttcca 9579053
to top
>ref|XM_978703.1| PREDICTED: Mus musculus potassium channel tetramerisation domain
            containing 1, transcript variant 1 (Kctd1), mRNA
          Length = 4757

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ggaattactgctagaaaata 130
            ||||||||||||||||||||
Sbjct: 3540 ggaattactgctagaaaata 3559
to top
>ref|XM_977929.1| PREDICTED: Mus musculus potassium channel tetramerisation domain
            containing 1, transcript variant 2 (Kctd1), mRNA
          Length = 4757

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ggaattactgctagaaaata 130
            ||||||||||||||||||||
Sbjct: 3540 ggaattactgctagaaaata 3559
to top
>ref|XM_980194.1| PREDICTED: Mus musculus potassium channel tetramerisation domain
            containing 1 (Kctd1), mRNA
          Length = 4757

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ggaattactgctagaaaata 130
            ||||||||||||||||||||
Sbjct: 3540 ggaattactgctagaaaata 3559
to top
>gb|AC133191.3| Mus musculus chromosome 18 clone RP23-390K15, complete sequence
          Length = 212060

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gaagggagaaagtagggaaa 206
             ||||||||||||||||||||
Sbjct: 21098 gaagggagaaagtagggaaa 21117
to top
>emb|CT026474.3| Macaca mulatta chromosome 9 BAC CH250-270M9, complete sequence
          Length = 168693

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   aaaagatcagaagtattgtt 250
             ||||||||||||||||||||
Sbjct: 16856 aaaagatcagaagtattgtt 16837
to top
>emb|CR956619.7| M.truncatula DNA sequence from clone MTH2-65F22 on chromosome 3,
             complete sequence
          Length = 148409

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   gaagggagaaagtagggaaa 206
             ||||||||||||||||||||
Sbjct: 77165 gaagggagaaagtagggaaa 77146
to top
>gb|AC124682.4| Mus musculus BAC clone RP24-336O24 from chromosome 6, complete sequence
          Length = 127717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   aaagaaaaagatcagaagta 245
             ||||||||||||||||||||
Sbjct: 40779 aaagaaaaagatcagaagta 40798
to top
>gb|AC125091.3| Mus musculus BAC clone RP24-165P5 from chromosome 18, complete sequence
          Length = 188837

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ggaattactgctagaaaata 130
             ||||||||||||||||||||
Sbjct: 55855 ggaattactgctagaaaata 55874
to top
>ref|XM_741081.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000432.03.0)
           partial mRNA
          Length = 1713

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 215 aatacgtaaagaaagaaaaa 234
           ||||||||||||||||||||
Sbjct: 978 aatacgtaaagaaagaaaaa 997
to top
>gb|AC113528.8| Mus musculus chromosome 18, clone RP23-419F17, complete sequence
          Length = 217309

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gaagggagaaagtagggaaa 206
             ||||||||||||||||||||
Sbjct: 70358 gaagggagaaagtagggaaa 70377
to top
>gb|AC161876.3| Mus musculus BAC clone RP24-388H6 from chromosome 1, complete sequence
          Length = 174149

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   gaatacgtaaagaaagaaaa 233
             ||||||||||||||||||||
Sbjct: 37987 gaatacgtaaagaaagaaaa 38006
to top
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces
               hansenii
          Length = 2051428

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 4       tcctgcaatttcgatttcat 23
               ||||||||||||||||||||
Sbjct: 1327651 tcctgcaatttcgatttcat 1327670
to top
>gb|AC160998.4| Mus musculus BAC clone RP23-78N12 from chromosome 6, complete sequence
          Length = 279848

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    aaagaaaaagatcagaagta 245
              ||||||||||||||||||||
Sbjct: 266008 aaagaaaaagatcagaagta 266027
to top
>emb|AL596084.13| Mouse DNA sequence from clone RP23-196B5 on chromosome 11 Contains the
             Pank3 gene for pantothenate kinase 3, a pseudogene similar
             to part of ribosomal protein L7a (Rpl7a), a pseudogene
             similar to part of fibrillarin (Fbl), the Rars gene for
             arginyl-tRNA synthetase, the 3' end of the gene for a
             novel protein similar to human KIBRA and two CpG islands,
             complete sequence
          Length = 181103

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   gaaagaaaaagatcagaagt 244
             ||||||||||||||||||||
Sbjct: 80524 gaaagaaaaagatcagaagt 80505
to top
>gb|AC163270.5| Mus musculus chromosome 1, clone RP24-292B21, complete sequence
          Length = 154928

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaagaaagaaaaagatcaga 241
             ||||||||||||||||||||
Sbjct: 99306 aaagaaagaaaaagatcaga 99325
to top
>gb|AC106716.3| Homo sapiens 3 BAC RP11-202P1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 152883

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 203   gaaatatttttgaatacgta 222
             ||||||||||||||||||||
Sbjct: 66396 gaaatatttttgaatacgta 66415
to top
>gb|AC117424.6| Homo sapiens 3 BAC RP11-172I10 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 136511

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 203    gaaatatttttgaatacgta 222
              ||||||||||||||||||||
Sbjct: 136248 gaaatatttttgaatacgta 136229
to top
>gb|AC008008.2| Homo sapiens Xp22 PAC RPCI6-102 (Roswell Park Cancer Institute Human PAC
              Library) complete sequence
          Length = 167257

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaagaaagaaaaagatcaga 241
              ||||||||||||||||||||
Sbjct: 155536 aaagaaagaaaaagatcaga 155517
to top
>ref|NM_024273.1| Mus musculus RIKEN cDNA 4930455C21 gene (4930455C21Rik), mRNA
          Length = 1540

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  aaagaaagaaaaagatcaga 241
            ||||||||||||||||||||
Sbjct: 1075 aaagaaagaaaaagatcaga 1056
to top
>emb|CR523546.1| Gallus gallus finished cDNA, clone ChEST860p24
          Length = 1402

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 16   gatttcatatatttgtacaa 35
            ||||||||||||||||||||
Sbjct: 1040 gatttcatatatttgtacaa 1021
to top
>emb|CR318639.6| Mouse DNA sequence from clone RP23-317N11 on chromosome 2, complete
              sequence
          Length = 193326

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaagaaagaaaaagatcaga 241
              ||||||||||||||||||||
Sbjct: 138443 aaagaaagaaaaagatcaga 138424
to top
>dbj|AK081781.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130076I24 product:SIMILAR TO M5-14
            PROTEIN homolog [Mus musculus], full insert sequence
          Length = 1502

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  aaagaaagaaaaagatcaga 241
            ||||||||||||||||||||
Sbjct: 1057 aaagaaagaaaaagatcaga 1038
to top
>dbj|AK054557.1| Mus musculus 10 days neonate olfactory brain cDNA, RIKEN full-length
            enriched library, clone:E530017G24 product:weakly similar
            to CDNA FLJ14995 FIS, CLONE Y79AA1002210, WEAKLY SIMILAR
            TO TUMOR NECROSIS FACTOR, ALPHA-INDUCED PROTEIN 1 [Homo
            sapiens], full insert sequence
          Length = 4064

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ggaattactgctagaaaata 130
            ||||||||||||||||||||
Sbjct: 2845 ggaattactgctagaaaata 2864
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 377    cgctgcccacctcgccgccg 396
              ||||||||||||||||||||
Sbjct: 383369 cgctgcccacctcgccgccg 383350
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 350      cccagtgcggcacctcgccgtcca 373
                ||||||||| ||||||||||||||
Sbjct: 24862407 cccagtgcgccacctcgccgtcca 24862384
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 230     aaaaagatcagaagtattgttcca 253
               |||||||||||| |||||||||||
Sbjct: 9577151 aaaaagatcagaggtattgttcca 9577174
to top
>gb|AC101455.9| Mus musculus chromosome 1, clone RP23-185E17, complete sequence
          Length = 185594

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaagaaagaaaaagatcaga 241
              ||||||||||||||||||||
Sbjct: 139011 aaagaaagaaaaagatcaga 138992
to top
>gb|AC068600.5| Homo sapiens BAC clone RP11-567N20 from 2, complete sequence
          Length = 136657

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 21    catatatttgtacaaattcctata 44
             |||||| |||||||||||||||||
Sbjct: 86374 catataattgtacaaattcctata 86397
to top
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0009C19, from chromosome 3, complete sequence
          Length = 131709

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 230   aaaaagatcagaagtattgttcca 253
             |||||||||||| |||||||||||
Sbjct: 33656 aaaaagatcagaggtattgttcca 33633
to top
>gb|AC128714.15| Homo sapiens 3 BAC RP11-433C9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 109972

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 95     tctcacctatgaaattggaa 114
              ||||||||||||||||||||
Sbjct: 102117 tctcacctatgaaattggaa 102098
to top
>emb|AL845476.15| Mouse DNA sequence from clone RP23-355G16 on chromosome 2, complete
             sequence
          Length = 218484

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 222   aaagaaagaaaaagatcaga 241
             ||||||||||||||||||||
Sbjct: 23529 aaagaaagaaaaagatcaga 23548
to top
>ref|XM_314285.2| Anopheles gambiae str. PEST ENSANGP00000001136 (ENSANGG00000000975),
            partial mRNA
          Length = 9390

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 399  gttccagttgctgctgttgctcga 422
            ||||||||||||||||||| ||||
Sbjct: 8775 gttccagttgctgctgttgatcga 8798
to top
>gb|BC002243.1| Mus musculus RIKEN cDNA 4930455C21 gene, mRNA (cDNA clone MGC:7537
            IMAGE:3492342), complete cds
          Length = 1540

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  aaagaaagaaaaagatcaga 241
            ||||||||||||||||||||
Sbjct: 1075 aaagaaagaaaaagatcaga 1056
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 350      cccagtgcggcacctcgccgtcca 373
                ||||||||| ||||||||||||||
Sbjct: 25174077 cccagtgcgccacctcgccgtcca 25174054
to top
>emb|BX005036.6| Mouse DNA sequence from clone RP23-185E17 on chromosome 1, complete
              sequence
          Length = 185591

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    aaagaaagaaaaagatcaga 241
              ||||||||||||||||||||
Sbjct: 139008 aaagaaagaaaaagatcaga 138989
to top
>emb|BX295537.1| Platypus DNA sequence from clone XX-200B24, complete sequence
          Length = 137155

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 187   gaagggagaaagtagggaaa 206
             ||||||||||||||||||||
Sbjct: 75902 gaagggagaaagtagggaaa 75921
to top
>gb|AC139299.3| Mus musculus BAC clone RP23-335D20 from 1, complete sequence
          Length = 204848

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    gaatacgtaaagaaagaaaa 233
              ||||||||||||||||||||
Sbjct: 100986 gaatacgtaaagaaagaaaa 100967
to top
>emb|BX000464.8| Mouse DNA sequence from clone RP23-166A1 on chromosome 2, complete
             sequence
          Length = 85939

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   aaagaaagaaaaagatcaga 241
             ||||||||||||||||||||
Sbjct: 61935 aaagaaagaaaaagatcaga 61916
to top
>emb|CR848808.14| Mouse DNA sequence from clone RP23-442I10 on chromosome 2, complete
            sequence
          Length = 128936

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 222  aaagaaagaaaaagatcaga 241
            ||||||||||||||||||||
Sbjct: 6318 aaagaaagaaaaagatcaga 6299
to top
>emb|CT027657.3| Macaca mulatta chromosome 9 BAC CH250-255J18, complete sequence
          Length = 172942

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 231    aaaagatcagaagtattgtt 250
              ||||||||||||||||||||
Sbjct: 125538 aaaagatcagaagtattgtt 125519
to top
>emb|AL844556.4| Mouse DNA sequence from clone RP23-21N12 on chromosome 2, complete
              sequence
          Length = 178656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    taaagaaagaaaaagatcag 240
              ||||||||||||||||||||
Sbjct: 129648 taaagaaagaaaaagatcag 129667


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,310,089
Number of Sequences: 3902068
Number of extensions: 6310089
Number of successful extensions: 161691
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160999
Number of HSP's gapped (non-prelim): 692
length of query: 428
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 406
effective length of database: 17,147,199,772
effective search space: 6961763107432
effective search space used: 6961763107432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top