ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet68a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SERC2_HUMAN (Q96SA4) Serine incorporator 2 (Tumor differentially... 30 1.5
2PRL_PIG (P01238) Prolactin precursor (PRL) 30 2.0
3PRL_HORSE (P12420) Prolactin precursor (PRL) 29 2.6
4CCR9_HUMAN (P51686) C-C chemokine receptor type 9 (C-C CKR-9) (C... 29 2.6
5OPT3_ARATH (O23482) Probable oligopeptide transporter 3 (AtOPT3) 29 3.4
6SCPB_MYCGA (Q7NB77) Segregation and condensation protein B 29 3.4
7LRFN2_MACFA (Q9BE71) Leucine-rich repeat and fibronectin type-II... 29 3.4
8LRFN2_HUMAN (Q9ULH4) Leucine-rich repeat and fibronectin type-II... 29 3.4
9VATA_SCHPO (P31406) Vacuolar ATP synthase catalytic subunit A (E... 28 4.4
10TILS_TROWT (Q83MT2) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 28 5.7
11TILS_TROW8 (Q83I94) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 28 5.7
12PRL_TRIVU (O62781) Prolactin precursor (PRL) 28 5.7
13IF3X_DICDI (O15818) Putative eukaryotic translation initiation f... 28 7.5
14LRFN2_MOUSE (Q80TG9) Leucine-rich repeat and fibronectin type-II... 28 7.5
15SYI_AZOSE (Q5P221) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 27 9.8
16C21AA_BACTU (P56956) Pesticidal crystal protein cry21Aa (Insecti... 27 9.8
17SDC3_CAEEL (P34706) Zinc finger protein sdc-3 27 9.8

>SERC2_HUMAN (Q96SA4) Serine incorporator 2 (Tumor differentially expressed|
           2-like)
          Length = 456

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/56 (32%), Positives = 26/56 (46%)
 Frame = -3

Query: 223 SCVRCLLLVAELFVCKSCPSNCQVFIRLYVCLDVSQVFSFFIFGRQNVSRLNLSPG 56
           SC  CL   A   +C  CP++    +          +F+FF+F    VS + LSPG
Sbjct: 12  SCASCLCGSAPCILCSCCPASRNSTVS-------RLIFTFFLFLGVLVSIIMLSPG 60



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>PRL_PIG (P01238) Prolactin precursor (PRL)|
          Length = 229

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 9/36 (25%)
 Frame = -3

Query: 223 SCVRCLLLVAELFVCKS------CPS---NCQVFIR 143
           S +  LLLV+ LF+CKS      CPS   NCQV +R
Sbjct: 11  SLLLLLLLVSNLFLCKSVASLPICPSGAVNCQVSLR 46



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>PRL_HORSE (P12420) Prolactin precursor (PRL)|
          Length = 229

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 10/44 (22%)
 Frame = -3

Query: 244 EKRSYIS-SCVRCLLLVAELFVCKS------CPS---NCQVFIR 143
           +KRS +  S +  LLLV++L +CKS      CPS   NCQV +R
Sbjct: 3   KKRSSLKGSLLLLLLLVSDLLLCKSVASLPICPSGAVNCQVSLR 46



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>CCR9_HUMAN (P51686) C-C chemokine receptor type 9 (C-C CKR-9) (CC-CKR-9)|
           (CCR-9) (GPR-9-6) (G-protein coupled receptor 28)
           (CDw199 antigen)
          Length = 357

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 211 CLLLVAELFVCKSCPSNCQVFIRLYVCLDVSQVFSFF 101
           C+LLV  +       SNC V   + +C  V+Q  +FF
Sbjct: 260 CILLVQTIDAYAMFISNCAVSTNIDICFQVTQTIAFF 296



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>OPT3_ARATH (O23482) Probable oligopeptide transporter 3 (AtOPT3)|
          Length = 737

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 27  IHLTPIYKLKPGLKFNRDTFCLPKIKKEKTCDTSKHT*SLMNTWQLD--GQLLQT 185
           ++L+P++ L  G  F R T  L  +      D  K T S +NT +LD  G+L+Q+
Sbjct: 357 LYLSPLFALSIGSGFARFTATLTHVALFNGRDIWKQTWSAVNTTKLDIHGKLMQS 411



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>SCPB_MYCGA (Q7NB77) Segregation and condensation protein B|
          Length = 291

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 215 SLFIIGRRAVCLQELSIQLPSVHQALCMFRRVASFFFLY 99
           +L++ GR  + LQEL+  LP +HQ   +F+ +    + Y
Sbjct: 111 ALYVAGRNGMTLQELNKILPKIHQDQ-LFKELEEMIYSY 148



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>LRFN2_MACFA (Q9BE71) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 2 precursor
          Length = 789

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 KQRTHEEIYDRFSPCGAGAETAARSPHS 290
           K +  EE+ D  +P G GA T+AR  HS
Sbjct: 666 KSQRKEELLDSRTPAGRGAGTSARGHHS 693



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>LRFN2_HUMAN (Q9ULH4) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 2 precursor
          Length = 789

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 KQRTHEEIYDRFSPCGAGAETAARSPHS 290
           K +  EE+ D  +P G GA T+AR  HS
Sbjct: 666 KSQRKEELLDSRTPAGRGAGTSARGHHS 693



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>VATA_SCHPO (P31406) Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)|
           (V-ATPase subunit A) (Vacuolar proton pump alpha
           subunit) (V-ATPase 67 kDa subunit)
          Length = 619

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +3

Query: 129 KHT*SLMNTWQLDGQLLQTNSSATNNKQRTHEEIYDRFSPCGAGAETA 272
           KH+ S+++TW +       ++   N    T + + D   PC  G  TA
Sbjct: 208 KHSFSMLHTWPVRAARPVADNLTANQPLLTGQRVLDALYPCVQGGTTA 255



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>TILS_TROWT (Q83MT2) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 415

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 292 CECGDRAAVSAPAPHGEKRSYI--SSCVRCLLLVAELFVCKSCPSNCQVFIRLYVCLDVS 119
           C C  R     P P  E RSY    SC +C+   A  F      S   VFIR +  LD++
Sbjct: 198 CSCDSRPYPPPPEPRNENRSYFPHPSC-KCVEGSATRFTNADIDSRFGVFIRPF--LDIT 254

Query: 118 Q 116
           +
Sbjct: 255 R 255



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>TILS_TROW8 (Q83I94) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 407

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = -3

Query: 292 CECGDRAAVSAPAPHGEKRSYI--SSCVRCLLLVAELFVCKSCPSNCQVFIRLYVCLDVS 119
           C C  R     P P  E RSY    SC +C+   A  F      S   VFIR +  LD++
Sbjct: 190 CSCDSRPYPPPPEPRNENRSYFPHPSC-KCVEGSATRFTNADIDSRFGVFIRPF--LDIT 246

Query: 118 Q 116
           +
Sbjct: 247 R 247



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>PRL_TRIVU (O62781) Prolactin precursor (PRL)|
          Length = 228

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
 Frame = -3

Query: 247 GEKRSYISSCVRCLLLVAELFVCKS------CPS---NCQV 152
           G KRS +   +  LLL++ LF+ KS      CPS   NCQV
Sbjct: 2   GTKRSSLKGSLLLLLLMSSLFLFKSVESLPICPSGAVNCQV 42



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>IF3X_DICDI (O15818) Putative eukaryotic translation initiation factor 3 subunit|
            (eIF-3)
          Length = 1321

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 19   LFPFI*HLSTN*SPGLNLTETHFVFQK*RKKKLATRL 129
            LFP + H++   + GL+L E    F   RK +LAT L
Sbjct: 942  LFPIVKHVNPRSTDGLDLLEAGKTFFNQRKYELATEL 978



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>LRFN2_MOUSE (Q80TG9) Leucine-rich repeat and fibronectin type-III|
           domain-containing protein 2 precursor
          Length = 788

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 KQRTHEEIYDRFSPCGAGAETAARSPHS 290
           K +  EE+ D  +P G GA T++R  HS
Sbjct: 667 KSQRKEELLDSRTPAGRGAGTSSRGHHS 694



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>SYI_AZOSE (Q5P221) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 939

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = +3

Query: 141 SLMNTWQLDGQLLQTNSSATNNKQRTHEEIYDRFSPCGAGAETAARS----PHSHDNLGL 308
           S +  +QL+G++L        ++       YDR SP   G   AA +     HS    GL
Sbjct: 280 SALERYQLEGRVLAAARGVALDRINFRHPFYDRLSPVFLGDYVAADAGTGIVHSAPAYGL 339

Query: 309 ED 314
           +D
Sbjct: 340 DD 341



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>C21AA_BACTU (P56956) Pesticidal crystal protein cry21Aa (Insecticidal|
            delta-endotoxin CryXXIA(a)) (Crystaline entomocidal
            protoxin) (132 kDa crystal protein)
          Length = 1167

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 315  HPQARDCHVSVAIEPPFPRPRHMVKNGRIFLHV 217
            HP +   H+S  + P  P+ RH    GR   HV
Sbjct: 990  HPASDYQHLSAVVVPTLPKQRHWFMEGREGEHV 1022



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>SDC3_CAEEL (P34706) Zinc finger protein sdc-3|
          Length = 2150

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 321 VQHPQARDCHVSVAIEPPFPRPRHMVKNGR 232
           ++H +   C+ SV  E P P P + V  G+
Sbjct: 544 IEHQRFHRCYTSVITEEPLPNPFYWVHRGQ 573


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,345,081
Number of Sequences: 219361
Number of extensions: 974094
Number of successful extensions: 2630
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2624
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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