>ref|NM_187480.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1086

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tcacatgacaatctcgggcttgaggatgctggacttgatc 1047

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                       
Query: 288     tcacatgacaatctcgggcttgaggatgctggacttgatc 327
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8881777 tcacatgacaatctcgggcttgaggatgctggacttgatc 8881816



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 25      ccattcatctgacacctatctacaa 49
               |||||||| ||||||||||||||||
Sbjct: 8881534 ccattcatgtgacacctatctacaa 8881558

>gb|AC139168.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1364E02,
             complete sequence
          Length = 126027

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                     
Query: 288   tcacatgacaatctcgggcttgaggatgctggacttgatc 327
             ||||||||||||||||||||||||||||||||||||||||
Sbjct: 72665 tcacatgacaatctcgggcttgaggatgctggacttgatc 72704



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 25    ccattcatctgacacctatctacaa 49
             |||||||| ||||||||||||||||
Sbjct: 72422 ccattcatgtgacacctatctacaa 72446

>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0071M09, complete sequence
          Length = 143595

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 6638 tcacatgacaatctcgggcttgaggatgctggacttgatc 6677



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 25   ccattcatctgacacctatctacaa 49
            |||||||| ||||||||||||||||
Sbjct: 6395 ccattcatgtgacacctatctacaa 6419

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                       
Query: 288     tcacatgacaatctcgggcttgaggatgctggacttgatc 327
               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8879612 tcacatgacaatctcgggcttgaggatgctggacttgatc 8879651



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 25      ccattcatctgacacctatctacaa 49
               |||||||| ||||||||||||||||
Sbjct: 8879369 ccattcatgtgacacctatctacaa 8879393

>dbj|AK121972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108I03, full
            insert sequence
          Length = 1476

 Score = 79.8 bits (40), Expect = 5e-12
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1274 tcacatgacaatctcgggcttgaggatgctggacttgatc 1235

>gb|BT016484.1| Zea mays clone Contig317 mRNA sequence
          Length = 1429

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 1147 tcacatgacgatctcgggcttgaggatgctggatttgatc 1108

>ref|NM_190595.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1086

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 1086 tcacatgacaatctcaggcttcaggatgcttgacttgatc 1047

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 288      tcacatgacaatctcgggcttgaggatgctggacttgatc 327
                ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 36390916 tcacatgacaatctcaggcttcaggatgcttgacttgatc 36390877

>dbj|AP003251.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0446B05
          Length = 149145

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                      
Query: 288    tcacatgacaatctcgggcttgaggatgctggacttgatc 327
              ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 140793 tcacatgacaatctcaggcttcaggatgcttgacttgatc 140754

>dbj|AP004127.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0005H10
          Length = 142885

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 288   tcacatgacaatctcgggcttgaggatgctggacttgatc 327
             ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 42755 tcacatgacaatctcaggcttcaggatgcttgacttgatc 42716

>dbj|AK122126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033132D02, full
            insert sequence
          Length = 1708

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 1396 tcacatgacaatctcaggcttcaggatgcttgacttgatc 1357

>dbj|AK064779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B04, full
            insert sequence
          Length = 1479

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 1282 tcacatgacaatctcaggcttcaggatgcttgacttgatc 1243

>dbj|AK061976.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-A03, full
            insert sequence
          Length = 1655

 Score = 56.0 bits (28), Expect = 7e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||| ||||| |||||||| |||||||||
Sbjct: 1281 tcacatgacaatctcaggcttcaggatgcttgacttgatc 1242

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 257     gggcgcggaaacggcggctcgatcgcca 284
               ||||||||||||| ||||||||||||||
Sbjct: 1149730 gggcgcggaaacgacggctcgatcgcca 1149703



 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 254    cgcgggcgcggaaacggcgg 273
              ||||||||||||||||||||
Sbjct: 462255 cgcgggcgcggaaacggcgg 462274

>ref|XM_480870.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1086

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 288  tcacatgacaatctcgggcttgaggatgctggacttgatc 327
            ||||||||||||||| || || |||||||| || ||||||
Sbjct: 1086 tcacatgacaatctcaggtttcaggatgcttgatttgatc 1047

>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 266     aacggcggctcgatcgccac 285
               ||||||||||||||||||||
Sbjct: 6887053 aacggcggctcgatcgccac 6887072

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 288     tcacatgacaatctcgggcttgaggatgctggacttgatc 327
               ||||||||||||||| || || |||||||| || ||||||
Sbjct: 8336065 tcacatgacaatctcaggtttcaggatgcttgatttgatc 8336104

>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0682A06
          Length = 142023

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 288   tcacatgacaatctcgggcttgaggatgctggacttgatc 327
             ||||||||||||||| || || |||||||| || ||||||
Sbjct: 76174 tcacatgacaatctcaggtttcaggatgcttgatttgatc 76213

>dbj|AB016265.1| Nicotiana sylvestris nserf3 gene for ethylene-responsive element
            binding factor, complete cds
          Length = 3818

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    taaaactgatgctttattcc 25
            ||||||||||||||||||||
Sbjct: 3037 taaaactgatgctttattcc 3018


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,061,710
Number of Sequences: 3902068
Number of extensions: 3061710
Number of successful extensions: 50185
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50066
Number of HSP's gapped (non-prelim): 119
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)