ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NLTP3_HORVU (Q43766) Nonspecific lipid-transfer protein 3 precur... 35 0.035
2NU4M_PARTE (P15581) NADH-ubiquinone oxidoreductase chain 4 (EC 1... 32 0.39
3ARGJ_ZYMMO (Q5NP13) Arginine biosynthesis bifunctional protein a... 28 5.6
4Y2020_AQUAE (O67818) Hypothetical protein aq_2020 28 7.3
5SCA_LILLO (Q9SW93) Stigma/stylar cysteine-rich adhesin precursor... 28 7.3
6DEOC2_MESFL (Q6F0H8) Deoxyribose-phosphate aldolase 2 (EC 4.1.2.... 27 9.5

>NLTP3_HORVU (Q43766) Nonspecific lipid-transfer protein 3 precursor (LTP 3)|
           (CW20) (CW-20) (CW-19)
          Length = 118

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -2

Query: 347 PFPISMSTDCNKVH 306
           PFPISMSTDCNKVH
Sbjct: 105 PFPISMSTDCNKVH 118



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>NU4M_PARTE (P15581) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 474

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -1

Query: 315 QGPLAGIRYSFLRACMDALVWSLIFTLMECSYVRY 211
           +G  + I Y FL   M AL+ +L+F L+EC Y RY
Sbjct: 320 KGDSSLIAYGFLFTIMHALMSTLMFFLVECIYSRY 354



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>ARGJ_ZYMMO (Q5NP13) Arginine biosynthesis bifunctional protein argJ [Includes:|
           Glutamate N-acetyltransferase (EC 2.3.1.35) (Ornithine
           acetyltransferase) (Ornithine transacetylase) (OATase);
           Amino-acid acetyltransferase (EC 2.3.1.1)
           (N-acetylglutamate syn
          Length = 409

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 238 VDGVLIRTILSNKK*NKRVCLCLYLAHTLCVCAYIFTRHACTRP 107
           +DG+ +RT+ +  K  +R  L L+L     V A + T+ AC  P
Sbjct: 19  IDGITLRTVCAGYKNWQRNDLSLFLFQPNTVVAGLTTQSACPSP 62



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>Y2020_AQUAE (O67818) Hypothetical protein aq_2020|
          Length = 223

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -1

Query: 282 LRACMDALVWSLIFTLMECSYVRY*A--IKNKIKEYAYVCTLHTHCV 148
           L+A  D  V  L +  +  S ++  A  +  + K Y +V T+H+HC+
Sbjct: 99  LKAVFDCAVGDLDWISLRLSLIKKTAEQLMEEGKSYRFVITIHSHCI 145



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>SCA_LILLO (Q9SW93) Stigma/stylar cysteine-rich adhesin precursor (Lipid|
           transfer protein)
          Length = 113

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -2

Query: 347 PFPISMSTDCNKV 309
           P+PI M TDCNKV
Sbjct: 100 PYPIRMQTDCNKV 112



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>DEOC2_MESFL (Q6F0H8) Deoxyribose-phosphate aldolase 2 (EC 4.1.2.4)|
           (Phosphodeoxyriboaldolase 2) (Deoxyriboaldolase 2) (DERA
           2)
          Length = 212

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -3

Query: 256 VELNIYVDGVLIRTILSNKK*NKRVCLCLYLAHTLCVCAYI 134
           ++LN Y+D  L++   +  + NK V LC+ + +  C+C +I
Sbjct: 1   MKLNNYIDATLLKPDATLIEINKFVDLCI-IKNVRCICVHI 40


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,669,919
Number of Sequences: 219361
Number of extensions: 1091104
Number of successful extensions: 2364
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2363
length of database: 80,573,946
effective HSP length: 91
effective length of database: 60,612,095
effective search space used: 1454690280
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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