ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CNGC1_ARATH (O65717) Cyclic nucleotide-gated ion channel 1 (AtCN... 34 0.19
2ORYZ_ASPFL (P35211) Oryzin precursor (EC 3.4.21.63) (Alkaline pr... 29 6.2
3PTG3B_CORGL (Q45298) PTS system glucose-specific EIIBCA componen... 28 8.1

>CNGC1_ARATH (O65717) Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic|
           nucleotide-and calmodulin-regulated ion channel 1)
          Length = 716

 Score = 33.9 bits (76), Expect = 0.19
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = -3

Query: 446 RLQERVPARLLQKPAEPNFSAEE 378
           R+ ER+P  LLQKPAEP+F++++
Sbjct: 694 RMPERMPPMLLQKPAEPDFNSDD 716



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>ORYZ_ASPFL (P35211) Oryzin precursor (EC 3.4.21.63) (Alkaline proteinase)|
           (ALP) (Elastase) (Elastinolytic serine proteinase)
          Length = 403

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 168 IHKTRSLITSHHCLVLLSRPGSNISSLNRYATAIPWLAFEPLANTVSNISDATAQIV 338
           ++ TR+  +++  +V +  PG NI S         W+      NT+S  S AT  IV
Sbjct: 308 VNNTRAYFSNYGSVVDIFAPGQNILSA--------WIGSNTATNTISGTSMATPHIV 356



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>PTG3B_CORGL (Q45298) PTS system glucose-specific EIIBCA component (EIIBCA-Glc)|
           (EII-Glc/EIII-Glc) [Includes: Glucose-specific
           phosphotransferase enzyme IIB component (EC 2.7.1.69)
           (PTS system glucose-specific EIIB component); Glucose
           permease IIC compone
          Length = 674

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +3

Query: 270 PWLAFEPLANTVSNISDATAQIVQKITLSRHSCKLLLLCG 389
           P +A EP  NTV   +DAT  +VQK   S H+  L L  G
Sbjct: 552 PGIAIEPTGNTVVAPADATVILVQK---SGHAVALRLESG 588


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,544,695
Number of Sequences: 219361
Number of extensions: 1305359
Number of successful extensions: 4244
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4244
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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