ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EPB42_MOUSE (P49222) Erythrocyte membrane protein band 4.2 (Eryt... 30 3.8
2FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-bind... 28 8.6
3JAG1B_BRARE (Q90Y54) Jagged-1b precursor (Jagged1b) (Jagged3) 28 8.6
4HIRL_SCHPO (P87314) Histone transcription regulator 1 homolog 28 8.6

>EPB42_MOUSE (P49222) Erythrocyte membrane protein band 4.2 (Erythrocyte protein|
           4.2) (P4.2)
          Length = 690

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +3

Query: 252 GWKLLHAGASPGA------ALVS*LCTRETVLKLSSSSPAISYPARKKSRVPTTAMVWYS 413
           GW++LH  A  GA      +LV     +E  L+L  + P +       + V  + +VW  
Sbjct: 344 GWQILHPRAPNGAGVLGSCSLVPVRAVKEGELQLDPAVPELF------AAVNASCVVW-K 396

Query: 414 CCADGGRLLASSAR 455
           CC DG   L +S R
Sbjct: 397 CCEDGKLELTNSNR 410



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>FLNB_MOUSE (Q80X90) Filamin-B (FLN-B) (Beta-filamin) (Actin-binding-like|
           protein) (ABP-280-like protein)
          Length = 2602

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 295 SAAPGLAPAWSSFQPKMDHDN 233
           S APGL P W S+ P+   DN
Sbjct: 177 SCAPGLCPDWESWDPRKPVDN 197



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>JAG1B_BRARE (Q90Y54) Jagged-1b precursor (Jagged1b) (Jagged3)|
          Length = 1213

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 403 CGIAAAPTAGGCWPAAPGP 459
           C +   P+ G CWP+AP P
Sbjct: 922 CFVKPCPSLGECWPSAPPP 940



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>HIRL_SCHPO (P87314) Histone transcription regulator 1 homolog|
          Length = 932

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
 Frame = -1

Query: 406 HTMAVVGTRLFFLAGYEIAGDDDESFRTVSLVHSYDTSAAPGLAPA----------WSSF 257
           HT  V   R      Y  +G DD   R V + H  +  A PGL             W S+
Sbjct: 73  HTGTVTSVRFSPNGQYLASGSDD---RVVIIWHKEE--AIPGLGSTFGSGEKHTENWRSY 127

Query: 256 QPKMDHDNNVED 221
           +  + HDN+++D
Sbjct: 128 RRLLGHDNDIQD 139


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,081,497
Number of Sequences: 219361
Number of extensions: 829056
Number of successful extensions: 2323
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2323
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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