ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF161718.1|AF161718 Triticum aestivum Sec61p (sec61) mRNA, co... 196 4e-47
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
3dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
4dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
5dbj|AK100597.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
6ref|NM_102671.2| Arabidopsis thaliana protein translocase AT1G29... 48 0.022
7gb|AY093047.1| Arabidopsis thaliana putative protein transport p... 48 0.022
8gb|AY087495.1| Arabidopsis thaliana clone 36037 mRNA, complete s... 48 0.022
9gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28... 48 0.022
10gb|AC117194.3| Mus musculus BAC clone RP23-92K11 from 12, comple... 42 1.3
11emb|AL669838.22| Mouse DNA sequence from clone RP23-324A4 on chr... 42 1.3
12emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4,... 42 1.3
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
14gb|AC127686.4| Mus musculus BAC clone RP24-188G23 from 3, comple... 42 1.3
15gb|AY110211.1| Zea mays CL336_2 mRNA sequence 42 1.3
16dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 42 1.3
17dbj|AP006301.1| Homo sapiens genomic DNA, chromosome 8 clone:RP1... 42 1.3
18gb|AC092818.4| Homo sapiens chromosome 8, clone RP11-419C23, com... 42 1.3
19gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, comp... 42 1.3
20dbj|AP000073.1| Homo sapiens genomic DNA, chromosome 8p11.2, sen... 42 1.3
21gb|AC157899.5| Mus musculus chromosome 15, clone RP23-98F15, com... 40 5.3
22gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, co... 40 5.3
23gb|AC107803.15| Mus musculus chromosome 9, clone RP23-47I9, comp... 40 5.3
24gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.3
25emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chr... 40 5.3
26gb|AC107759.18| Mus musculus chromosome 5, clone RP23-193N17, co... 40 5.3
27gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.3
28ref|XM_964922.1| PREDICTED: Tribolium castaneum similar to CG100... 40 5.3
29gb|AC024606.11| Homo sapiens chromosome 10 clone RP11-360I20, co... 40 5.3
30gb|AC051618.7| Homo sapiens chromosome 10 clone RP11-264A11, com... 40 5.3
31dbj|AK142795.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 5.3
32gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.3
33ref|NM_074033.2| Caenorhabditis elegans Serpentine Receptor, cla... 40 5.3
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
35gb|AY324828.1| Pseudomonas phage Pf1, complete prophage 40 5.3
36dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09,... 40 5.3
37dbj|AK062070.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
38dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 5.3
39dbj|AP000567.2| Homo sapiens genomic DNA, chromosome 21q22.1, cl... 40 5.3 
>gb|AF161718.1|AF161718 Triticum aestivum Sec61p (sec61) mRNA, complete cds
          Length = 1630

 Score =  196 bits (99), Expect = 4e-47
 Identities = 164/184 (89%), Gaps = 10/184 (5%)
 Strand = Plus / Minus

                                                                        
Query: 221  ctacagatttctcaactgtaaataagtcgggc-aacctaaacagaatttaatctccggtt 279
            |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 1588 ctacagatttctcaactgtaaataagtcggggtaacctaaacagaatttaatctccggtt 1529

                                                                        
Query: 280  acaaccaaaaca----gccagccaagcagtactgtgacagtctaaaaagact-----tga 330
            ||||||| ||||    ||||||||||||||| || ||| |||||||||||||     || 
Sbjct: 1528 acaaccacaacagccagccagccaagcagtattgcgactgtctaaaaagactcgagctgg 1469

                                                                        
Query: 331  gctgtagccataacatgctcccaaagctatcatgtatcaatcagaacccaaagaaaccaa 390
            ||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||
Sbjct: 1468 gctgtagccataacatgctcccaaagctatcatgtttcaatcaaaacccgaaaaaaccaa 1409

                
Query: 391  gctc 394
            ||||
Sbjct: 1408 gctc 1405
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Plus

                                                                            
Query: 240      aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 296
                |||||||||||||||||||||| || |||||  |||||  ||||| ||| |||||||| |
Sbjct: 10862850 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 10862909

                            
Query: 297      ccaagcagtact 308
                ||||| ||||||
Sbjct: 10862910 ccaagaagtact 10862921



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 378      ccaaagaaaccaagctcggt 397
                ||||||||||||||||||||
Sbjct: 10862983 ccaaagaaaccaagctcggt 10863002
to top
>dbj|AP005313.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0512H04
          Length = 151049

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Plus

                                                                         
Query: 240   aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 296
             |||||||||||||||||||||| || |||||  |||||  ||||| ||| |||||||| |
Sbjct: 86573 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 86632

                         
Query: 297   ccaagcagtact 308
             ||||| ||||||
Sbjct: 86633 ccaagaagtact 86644



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 378   ccaaagaaaccaagctcggt 397
             ||||||||||||||||||||
Sbjct: 86706 ccaaagaaaccaagctcggt 86725
to top
>dbj|AP005400.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0698G06
          Length = 138282

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Plus

                                                                        
Query: 240  aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 296
            |||||||||||||||||||||| || |||||  |||||  ||||| ||| |||||||| |
Sbjct: 2555 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 2614

                        
Query: 297  ccaagcagtact 308
            ||||| ||||||
Sbjct: 2615 ccaagaagtact 2626



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 378  ccaaagaaaccaagctcggt 397
            ||||||||||||||||||||
Sbjct: 2688 ccaaagaaaccaagctcggt 2707
to top
>dbj|AK100597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107A15, full
            insert sequence
          Length = 2132

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 62/72 (86%), Gaps = 3/72 (4%)
 Strand = Plus / Minus

                                                                        
Query: 240  aaataagtcgggcaacctaaacagaatttaa--tctccggttacaacca-aaacagccag 296
            |||||||||||||||||||||| || |||||  |||||  ||||| ||| |||||||| |
Sbjct: 1706 aaataagtcgggcaacctaaactgactttaagctctccaattacatccataaacagccgg 1647

                        
Query: 297  ccaagcagtact 308
            ||||| ||||||
Sbjct: 1646 ccaagaagtact 1635



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  ccaaagaaaccaagctcggt 397
            ||||||||||||||||||||
Sbjct: 1573 ccaaagaaaccaagctcggt 1554
to top
>ref|NM_102671.2| Arabidopsis thaliana protein translocase AT1G29310 mRNA, complete cds
          Length = 1688

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 368  caatcagaacccaaagaaaccaagctcg 395
            ||||||||| ||||||||||||||||||
Sbjct: 1527 caatcagaatccaaagaaaccaagctcg 1500
to top
>gb|AY093047.1| Arabidopsis thaliana putative protein transport protein SEC61 alpha
            subunit (At1g29310) mRNA, complete cds
          Length = 1686

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 368  caatcagaacccaaagaaaccaagctcg 395
            ||||||||| ||||||||||||||||||
Sbjct: 1525 caatcagaatccaaagaaaccaagctcg 1498
to top
>gb|AY087495.1| Arabidopsis thaliana clone 36037 mRNA, complete sequence
          Length = 1595

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 368  caatcagaacccaaagaaaccaagctcg 395
            ||||||||| ||||||||||||||||||
Sbjct: 1527 caatcagaatccaaagaaaccaagctcg 1500
to top
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence,
            complete sequence
          Length = 154716

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 368  caatcagaacccaaagaaaccaagctcg 395
            ||||||||| ||||||||||||||||||
Sbjct: 8861 caatcagaatccaaagaaaccaagctcg 8888
to top
>gb|AC117194.3| Mus musculus BAC clone RP23-92K11 from 12, complete sequence
          Length = 204913

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tacaagaaaacacagaaaaac 22
              |||||||||||||||||||||
Sbjct: 144935 tacaagaaaacacagaaaaac 144955
to top
>emb|AL669838.22| Mouse DNA sequence from clone RP23-324A4 on chromosome 11 Contains the
             Adcy1 gene for adenylate cyclase 1, a novel gene and a CpG
             island, complete sequence
          Length = 189132

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 291   agccagccaagcagtactgtg 311
             |||||||||||||||||||||
Sbjct: 61129 agccagccaagcagtactgtg 61109
to top
>emb|AL662959.3|OSJN00160 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019G23,
              complete sequence
          Length = 150305

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 366    atcaatcagaacccaaagaaa 386
              |||||||||||||||||||||
Sbjct: 111961 atcaatcagaacccaaagaaa 111981
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 366     atcaatcagaacccaaagaaa 386
               |||||||||||||||||||||
Sbjct: 4484229 atcaatcagaacccaaagaaa 4484249
to top
>gb|AC127686.4| Mus musculus BAC clone RP24-188G23 from 3, complete sequence
          Length = 173474

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 290   cagccagccaagcagtactgt 310
             |||||||||||||||||||||
Sbjct: 87791 cagccagccaagcagtactgt 87811
to top
>gb|AY110211.1| Zea mays CL336_2 mRNA sequence
          Length = 1189

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 373 agaacccaaagaaaccaagctcggt 397
           |||| ||||||||||||||||||||
Sbjct: 897 agaaaccaaagaaaccaagctcggt 873
to top
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete
             sequence
          Length = 185588

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     aaacacagaaaaacctactca 29
             |||||||||||||||||||||
Sbjct: 16390 aaacacagaaaaacctactca 16370
to top
>dbj|AP006301.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-139F6, complete
              sequence
          Length = 163604

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 9      aaacacagaaaaacctactca 29
              |||||||||||||||||||||
Sbjct: 100917 aaacacagaaaaacctactca 100897
to top
>gb|AC092818.4| Homo sapiens chromosome 8, clone RP11-419C23, complete sequence
          Length = 175100

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 9      aaacacagaaaaacctactca 29
              |||||||||||||||||||||
Sbjct: 115814 aaacacagaaaaacctactca 115834
to top
>gb|AC130472.2| Homo sapiens chromosome 3 clone RP11-395P16, complete sequence
          Length = 194160

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 2      tacaagaaaacacagaaaaac 22
              |||||||||||||||||||||
Sbjct: 130832 tacaagaaaacacagaaaaac 130852
to top
>dbj|AP000073.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region,
             section 9/19, complete sequence
          Length = 100000

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     aaacacagaaaaacctactca 29
             |||||||||||||||||||||
Sbjct: 19154 aaacacagaaaaacctactca 19174
to top
>gb|AC157899.5| Mus musculus chromosome 15, clone RP23-98F15, complete sequence
          Length = 199372

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    aacacagaaaaacctactcatatc 33
             |||||||||||||||| |||||||
Sbjct: 80252 aacacagaaaaacctattcatatc 80229
to top
>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence
          Length = 206675

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 10     aacacagaaaaacctactcatatc 33
              |||||||||||||||| |||||||
Sbjct: 148334 aacacagaaaaacctattcatatc 148311
to top
>gb|AC107803.15| Mus musculus chromosome 9, clone RP23-47I9, complete sequence
          Length = 198199

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    agaaaaacctactcatatcagaga 38
             |||||||||| |||||||||||||
Sbjct: 73166 agaaaaaccttctcatatcagaga 73143
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 370     atcagaacccaaagaaaccaagctcggt 397
               |||| |||||||||||||| ||||||||
Sbjct: 5867409 atcaaaacccaaagaaacctagctcggt 5867382
to top
>emb|CT009509.7| Mouse DNA sequence from clone RP23-140C10 on chromosome 13, complete
              sequence
          Length = 218144

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 290    cagccagccaagcagtactg 309
              ||||||||||||||||||||
Sbjct: 106487 cagccagccaagcagtactg 106468
to top
>gb|AC107759.18| Mus musculus chromosome 5, clone RP23-193N17, complete sequence
          Length = 262970

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 281    caaccaaaacagccagccaa 300
              ||||||||||||||||||||
Sbjct: 165739 caaccaaaacagccagccaa 165720
to top
>gb|AC146619.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNAa0021B21, from chromosome 3, complete sequence
          Length = 139208

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 370   atcagaacccaaagaaaccaagctcggt 397
             |||| |||||||||||||| ||||||||
Sbjct: 96239 atcaaaacccaaagaaacctagctcggt 96212
to top
>ref|XM_964922.1| PREDICTED: Tribolium castaneum similar to CG1007-PA (LOC658540), mRNA
          Length = 1937

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aacattcagttgctatatag 122
            ||||||||||||||||||||
Sbjct: 1884 aacattcagttgctatatag 1865
to top
>gb|AC024606.11| Homo sapiens chromosome 10 clone RP11-360I20, complete sequence
          Length = 186533

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tacaagaaaacacagaaaaa 21
             ||||||||||||||||||||
Sbjct: 97820 tacaagaaaacacagaaaaa 97839
to top
>gb|AC051618.7| Homo sapiens chromosome 10 clone RP11-264A11, complete sequence
          Length = 164823

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tacaagaaaacacagaaaaa 21
             ||||||||||||||||||||
Sbjct: 12072 tacaagaaaacacagaaaaa 12091
to top
>dbj|AK142795.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930016L24 product:CLIP associating
            protein 2, full insert sequence
          Length = 4656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 15   agaaaaacctactcatatcagaga 38
            |||||||||| |||||||||||||
Sbjct: 1933 agaaaaaccttctcatatcagaga 1910
to top
>gb|AC134241.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0085F02, complete sequence
          Length = 128535

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 370   atcagaacccaaagaaaccaagctcggt 397
             |||| |||||||||||||| ||||||||
Sbjct: 17031 atcaaaacccaaagaaacctagctcggt 17004
to top
>ref|NM_074033.2| Caenorhabditis elegans Serpentine Receptor, class X family member
           (srx-134) (srx-134) mRNA, complete cds
          Length = 924

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 98  cccaaaacattcagttgctatata 121
           ||||||| ||||||||||||||||
Sbjct: 418 cccaaaatattcagttgctatata 441
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 370     atcagaacccaaagaaaccaagctcggt 397
               |||| |||||||||||||| ||||||||
Sbjct: 5866622 atcaaaacccaaagaaacctagctcggt 5866595
to top
>gb|AY324828.1| Pseudomonas phage Pf1, complete prophage
          Length = 10675

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    aaaacacagaaaaacctact 27
            ||||||||||||||||||||
Sbjct: 2010 aaaacacagaaaaacctact 2029
to top
>dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09, map 22, complete
              sequences
          Length = 184352

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      agaaaacacagaaaaaccta 25
              ||||||||||||||||||||
Sbjct: 106320 agaaaacacagaaaaaccta 106339
to top
>dbj|AK062070.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-E03, full
            insert sequence
          Length = 1621

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 370  atcagaacccaaagaaaccaagctcggt 397
            |||| |||||||||||||| ||||||||
Sbjct: 1336 atcaaaacccaaagaaacctagctcggt 1309
to top
>dbj|AP001708.1| Homo sapiens genomic DNA, chromosome 21q, section 52/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     agaaaacacagaaaaaccta 25
             ||||||||||||||||||||
Sbjct: 96074 agaaaacacagaaaaaccta 96093
to top
>dbj|AP000567.2| Homo sapiens genomic DNA, chromosome 21q22.1, clone:B41N19, SOD-AML
             region, complete sequence
          Length = 181283

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 6     agaaaacacagaaaaaccta 25
             ||||||||||||||||||||
Sbjct: 56305 agaaaacacagaaaaaccta 56324


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,072,886
Number of Sequences: 3902068
Number of extensions: 4072886
Number of successful extensions: 81385
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81236
Number of HSP's gapped (non-prelim): 147
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top