ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67e10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb) 32 0.70
2CPN2_HUMAN (P22792) Carboxypeptidase N subunit 2 precursor (Carb... 31 1.2
3SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precurs... 30 2.7
4PYRF_PROMP (Q7V0D8) Orotidine 5'-phosphate decarboxylase (EC 4.1... 29 4.5
5ACPS_BURPS (Q63S99) Holo-[acyl-carrier-protein] synthase (EC 2.7... 29 5.9
6ACPS_BURMA (Q62LS6) Holo-[acyl-carrier-protein] synthase (EC 2.7... 29 5.9
7UL21_PRVN3 (Q00703) Protein UL21 homolog 29 5.9
8TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II) 29 5.9
9OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinas... 29 5.9
10FGD5_HUMAN (Q6ZNL6) FYVE, RhoGEF and PH domain-containing protei... 29 5.9
11KI20A_HUMAN (O95235) Kinesin family member 20A (Rabkinesin-6) (R... 28 7.7
12V70K_OYMV (P20130) 66 kDa protein 28 7.7

>MY18B_HUMAN (Q8IUG5) Myosin-18B (Myosin XVIIIb)|
          Length = 2567

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 26/91 (28%), Positives = 40/91 (43%)
 Frame = +3

Query: 75   GTYVRSL*LKPLIMMTTATTPAQINQSSNLNQRHCMQLHANPLASTYPRGCGDVSRLIIS 254
            GT  ++L    ++  T A++ A + + +  +Q   ++L  + L S   R     SRL   
Sbjct: 1148 GTSQQALQRSRMVRRTFASSLAAVRRKAPCSQ---IKLQMDALTSMIKR-----SRLHFI 1199

Query: 255  TCMVHAPACLDRSGHRRPCAPGTGRCSPARG 347
             C+V  P    RSG   P  P  GR  P  G
Sbjct: 1200 HCLVPNPVVESRSGQESPPPPQPGRDKPGAG 1230



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>CPN2_HUMAN (P22792) Carboxypeptidase N subunit 2 precursor (Carboxypeptidase N|
           polypeptide 2) (Carboxypeptidase N 83 kDa chain)
           (Carboxypeptidase N regulatory subunit)
           (Carboxypeptidase N large subunit)
          Length = 545

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 298 WPDRSRQAGACTMQV---LIIKRDTSPHPRG*VLANGFACNCMQCRWLRFEL 152
           WPD S+  G+  + V       + T  +P G V+    AC+  QCRWL  +L
Sbjct: 458 WPDESKAGGSWDLAVQERAARSQCTYSNPEGTVV---LACDQAQCRWLNVQL 506



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>SREC_HUMAN (Q14162) Endothelial cells scavenger receptor precursor (Acetyl LDL|
           receptor) (Scavenger receptor class F member 1)
          Length = 830

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +3

Query: 288 RSGHRRPCAPGTGRCSPARGSWTG 359
           R  H  PC+P TG C      W G
Sbjct: 267 RCKHNEPCSPDTGSCESCEPGWNG 290



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>PYRF_PROMP (Q7V0D8) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 239

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 123 TATTPAQINQSSNLNQRHCMQLHANPLASTYPRGCGDVSRLIISTCMVHAPA 278
           T   P+ I    NLN++  + L  + + +T    C +VS+L +    VHA A
Sbjct: 43  TREGPSVIKILKNLNKKIFLDLKFHDIPNTMSAACYEVSKLGVDIISVHASA 94



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>ACPS_BURPS (Q63S99) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 143

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 384 WRAVGRVRRPSRSPWLDCIDQYPARMDACGLTDR 283
           WRA+  + RPS  P++    +  A +DA G+T R
Sbjct: 79  WRALQTLNRPSGEPYVVASGELAAWLDARGITAR 112



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>ACPS_BURMA (Q62LS6) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)|
           (Holo-ACP synthase) (4'-phosphopantetheinyl transferase
           acpS)
          Length = 143

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 384 WRAVGRVRRPSRSPWLDCIDQYPARMDACGLTDR 283
           WRA+  + RPS  P++    +  A +DA G+T R
Sbjct: 79  WRALQTLNRPSGEPYVVASGELAAWLDARGITAR 112



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>UL21_PRVN3 (Q00703) Protein UL21 homolog|
          Length = 523

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 228 GDVSRLIISTCMVHAPACLDRSGHRRP 308
           G+V R++++  +VHAPA  D +G   P
Sbjct: 384 GEVMRMLVNAAVVHAPAIADPAGASPP 410



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>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)|
          Length = 518

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 340 PGAPGRAAHASDGAPHGAVALEPGAEGELPHA 435
           P A G AA A++GA   A    P AEG +P A
Sbjct: 406 PAAEGEAAPAAEGAAPPAEGAAPPAEGAVPPA 437



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>OBSCN_HUMAN (Q5VST9) Obscurin (Obscurin-myosin light chain kinase)|
            (Obscurin-MLCK) (Obscurin-RhoGEF)
          Length = 7968

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 387  VWRAVGRVRRPSRSPWLDCIDQYP 316
            +W A+ R RR SR P LD I + P
Sbjct: 4739 LWEALARKRRMSREPTLDSISELP 4762



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>FGD5_HUMAN (Q6ZNL6) FYVE, RhoGEF and PH domain-containing protein 5 (Zinc|
           finger FYVE domain-containing protein 23)
          Length = 1462

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 289 GQATGVHARRVLVDAVQPGAPGRAAHASDGAPHGAVALEPGAEG 420
           G+A G+       D+V P APG  A + +G     +ALE   EG
Sbjct: 106 GEACGLEGTGAGEDSVAPTAPGAGALSREGEEGTDLALEDEGEG 149



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>KI20A_HUMAN (O95235) Kinesin family member 20A (Rabkinesin-6) (Rab6-interacting|
           kinesin-like protein) (GG10_2)
          Length = 890

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 171 RHCMQLHANPLASTYPRGCGDVSRLIISTCMVHAP 275
           R CM ++ NP ASTY           I++ +VHAP
Sbjct: 477 RSCMIVNVNPCASTYDETLHVAKFSAIASQLVHAP 511



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>V70K_OYMV (P20130) 66 kDa protein|
          Length = 597

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 266 ACACLSRSVRPQASMRAGYWSMQSSQGLLDGRRTRPTARHTALLHLNPEPKASCH 430
           +C   S S++    +   + S+  S  L    R RPT R   LL L+P+   + H
Sbjct: 312 SCRVRSNSLQQTPILMGHFKSLGQSPNLRSFERPRPTRRSLRLLPLSPQKVPTVH 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,759,045
Number of Sequences: 219361
Number of extensions: 1143580
Number of successful extensions: 3784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3780
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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