ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 60 1e-09
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 52 5e-07
3LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 33 0.19
4ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex e... 28 8.1

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
            (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 31/36 (86%), Positives = 31/36 (86%), Gaps = 5/36 (13%)
 Frame = -1

Query: 256  MVPYVLLRPSDGDPTD-----EKMVMEMGIPNSISI 164
            MVPYVLLRPSDGDPTD     EKMVMEMGIPNSISI
Sbjct: 901  MVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:2)
          Length = 932

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 24/31 (77%), Positives = 27/31 (87%)
 Frame = -1

Query: 256 MVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 164
           +VPYVLLRP +G+P D K VMEMGIPNSISI
Sbjct: 902 VVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 18/32 (56%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = -1

Query: 253 VPYVLLRPSDGDPTDEKM--VMEMGIPNSISI 164
           +PY+LL P+  D T EK   +  MGIPNSISI
Sbjct: 846 MPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit|
           2 (ACDS complex epsilon subunit 2)
          Length = 170

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 100 WPGGGYNGNEPQIIIKGHDDIYI 32
           WPG   NGN   II+ GH   YI
Sbjct: 99  WPGLDGNGNYDTIILLGHKKYYI 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,639,443
Number of Sequences: 219361
Number of extensions: 776188
Number of successful extensions: 1881
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1872
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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