>emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on chromosome 2, complete
              sequence
          Length = 216706

 Score = 44.1 bits (22), Expect = 0.29
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 12     aaaaacttgccatgtattccat 33
              ||||||||||||||||||||||
Sbjct: 119659 aaaaacttgccatgtattccat 119680

>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 8       gctcaaaaacttgccatgtat 28
               |||||||||||||||||||||
Sbjct: 1665812 gctcaaaaacttgccatgtat 1665832



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 8       gctcaaaaacttgccatgtat 28
               |||||||||||||||||||||
Sbjct: 1200465 gctcaaaaacttgccatgtat 1200485

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 213      ggagcagagtgtcattcacctcgcagaac 241
                ||||||| ||||| |||||||||||||||
Sbjct: 30472398 ggagcagcgtgtcgttcacctcgcagaac 30472370

>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0017G10
          Length = 166700

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 213    ggagcagagtgtcattcacctcgcagaac 241
              ||||||| ||||| |||||||||||||||
Sbjct: 109759 ggagcagcgtgtcgttcacctcgcagaac 109731

>ref|NM_013544.2| Mus musculus histocompatibility 2, M region locus 10.1 (H2-M10.1),
           mRNA
          Length = 1399

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 580 taagaagcctttgtacacac 561

>gb|BC104321.1| Mus musculus histocompatibility 2, M region locus 10.1, mRNA (cDNA
           clone IMAGE:40044795), partial cds
          Length = 1038

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 572 taagaagcctttgtacacac 553

>gb|AC129554.13| Mus musculus chromosome 17, clone RP24-358N7, complete sequence
          Length = 182184

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     taagaagcctttgtacacac 95
              ||||||||||||||||||||
Sbjct: 170965 taagaagcctttgtacacac 170984

>gb|AC146000.4| Pan troglodytes BAC clone RP43-147L18 from 7, complete sequence
          Length = 176192

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 54     actgaaatgaacaatttgtacata 77
              |||||||||||||||||| |||||
Sbjct: 124382 actgaaatgaacaatttgaacata 124359

>ref|NM_201608.1| Mus musculus histocompatibility 2, M region locus 10.3 (H2-M10.3),
           mRNA
          Length = 1597

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 582 taagaagcctttgtacacac 563

>gb|AC120403.8| Mus musculus chromosome 17, clone RP24-405C18, complete sequence
          Length = 178435

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    taagaagcctttgtacacac 95
             ||||||||||||||||||||
Sbjct: 71318 taagaagcctttgtacacac 71337



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    taagaagcctttgtacacac 95
             ||||||||||||||||||||
Sbjct: 29057 taagaagcctttgtacacac 29076

>ref|XM_670354.1| Plasmodium berghei strain ANKA serine/threonine kinase-1,
           (PB000409.02.0) partial mRNA
          Length = 1218

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 51  ccaactgaaatgaacaattt 70
           ||||||||||||||||||||
Sbjct: 198 ccaactgaaatgaacaattt 179

>gb|AC144428.1| Pan troglodytes BAC clone RP43-2C19 from 7, complete sequence
          Length = 208183

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 54     actgaaatgaacaatttgtacata 77
              |||||||||||||||||| |||||
Sbjct: 200771 actgaaatgaacaatttgaacata 200794

>emb|CR450812.5| Zebrafish DNA sequence from clone CH211-161H7, complete sequence
          Length = 154456

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     ataagaagcctttgtacaca 94
              ||||||||||||||||||||
Sbjct: 102093 ataagaagcctttgtacaca 102074

>gb|BC104320.1| Mus musculus histocompatibility 2, M region locus 10.1, mRNA (cDNA
           clone IMAGE:40044793), partial cds
          Length = 912

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 446 taagaagcctttgtacacac 427

>emb|AL136312.11| Human DNA sequence from clone RP3-494K13 on chromosome 6 Contains
            GSSs and STSs, complete sequence
          Length = 56028

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   agagagatagaccaatatct 116
            ||||||||||||||||||||
Sbjct: 7360 agagagatagaccaatatct 7379

>gb|AC117436.6| Homo sapiens 3 BAC RP11-69K16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 133636

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    ctgttttcatacattatatg 143
              ||||||||||||||||||||
Sbjct: 127653 ctgttttcatacattatatg 127672

>gb|AC018714.4| Homo sapiens BAC clone RP11-382A18 from 8, complete sequence
          Length = 176760

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   caacttgtttccaaatccaa 185
             ||||||||||||||||||||
Sbjct: 49039 caacttgtttccaaatccaa 49058

>gb|AF532113.1| Mus musculus strain 129/SvJ BAC clone citb255d16 from the MHC region,
             complete sequence
          Length = 26962

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    taagaagcctttgtacacac 95
             ||||||||||||||||||||
Sbjct: 26356 taagaagcctttgtacacac 26375

>gb|AF532111.1| Mus musculus strain 129/SvJ BAC clone citb10i1 from the MHC region,
             complete sequence
          Length = 178254

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    taagaagcctttgtacacac 95
             ||||||||||||||||||||
Sbjct: 44670 taagaagcctttgtacacac 44689



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   taagaagcctttgtacacac 95
            ||||||||||||||||||||
Sbjct: 2443 taagaagcctttgtacacac 2462

>gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, complete sequence
          Length = 150263

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 123  cctgttttcatacattatat 142
            ||||||||||||||||||||
Sbjct: 989  cctgttttcatacattatat 1008

>gb|AC104666.3| Homo sapiens BAC clone RP11-771N14 from 2, complete sequence
          Length = 23884

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 123  cctgttttcatacattatat 142
            ||||||||||||||||||||
Sbjct: 1010 cctgttttcatacattatat 991

>gb|AY211079.1| Mus musculus major histocompatibility complex class Ib M10.2 mRNA,
           complete cds
          Length = 1399

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 580 taagaagcctttgtacacac 561

>gb|AY211080.1| Mus musculus major histocompatibility complex class Ib M10.3 mRNA,
           complete cds
          Length = 1597

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 582 taagaagcctttgtacacac 563

>gb|AF539599.1| Mus musculus histocompatibility 2, M region locus 10.3 mRNA,
           complete cds
          Length = 993

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 577 taagaagcctttgtacacac 558

>gb|AF539597.1| Mus musculus histocompatibility 2, M region locus 10.1 mRNA,
           complete cds
          Length = 996

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 76  taagaagcctttgtacacac 95
           ||||||||||||||||||||
Sbjct: 580 taagaagcctttgtacacac 561

>gb|AC024084.4|AC024084 Human Chromosome 7 clone RP11-212C18, complete sequence
          Length = 183709

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 54     actgaaatgaacaatttgtacata 77
              |||||||||||||||||| |||||
Sbjct: 145005 actgaaatgaacaatttgaacata 145028

>emb|AL845349.13| Mouse DNA sequence from clone RP23-311F6 on chromosome 2, complete
             sequence
          Length = 180824

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 65    caatttgtacataagaagcc 84
             ||||||||||||||||||||
Sbjct: 25845 caatttgtacataagaagcc 25826

>gb|AC009784.2|AC009784 Homo sapiens clone RP11-277F10 from 7q31, complete sequence
          Length = 165822

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 54    actgaaatgaacaatttgtacata 77
             |||||||||||||||||| |||||
Sbjct: 21069 actgaaatgaacaatttgaacata 21092

>dbj|AB085744.1| Mesocricetus auratus mRNA for B7-2, complete cds
          Length = 2611

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    gctcaaaaacttgccatgta 27
            ||||||||||||||||||||
Sbjct: 1135 gctcaaaaacttgccatgta 1116

>gb|AF016309.1|AF016309 Mus musculus MHC class Ib antigen (M10) gene, complete cds
          Length = 2474

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   taagaagcctttgtacacac 95
            ||||||||||||||||||||
Sbjct: 1226 taagaagcctttgtacacac 1207


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,802,138
Number of Sequences: 3902068
Number of extensions: 2802138
Number of successful extensions: 77342
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77295
Number of HSP's gapped (non-prelim): 47
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)