>SMYD4_PONPY (Q5R5X9) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 311 YCHRCIKLLAGVLSCSGC 364
           YCHRC+K     + C GC
Sbjct: 295 YCHRCLKHTLATVPCDGC 312

>SMYD4_HUMAN (Q8IYR2) SET and MYND domain-containing protein 4|
          Length = 804

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 311 YCHRCIKLLAGVLSCSGC 364
           YCHRC+K     + C GC
Sbjct: 295 YCHRCLKHTLATVPCDGC 312

>NRBP_PONPY (Q5RBH9) Nuclear receptor-binding protein|
          Length = 535

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 238
           I+++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 IKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>NRBP_MACFA (Q4R8X0) Nuclear receptor-binding protein|
          Length = 535

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 238
           I+++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 IKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>NRBP_HUMAN (Q9UHY1) Nuclear receptor-binding protein|
          Length = 535

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 238
           I+++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 IKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>SMYD4_CHICK (Q5F3V0) SET and MYND domain-containing protein 4|
          Length = 742

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 311 YCHRCIKLLAGVLSCSGC 364
           YCH C+K L   + C GC
Sbjct: 294 YCHHCLKQLLASIPCCGC 311

>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 171 WWPFSLSLTCMHRH*TRPDGHD 236
           WWP  L+L+ +H+H  + + HD
Sbjct: 31  WWPNQLNLSILHQHDRKTNPHD 52

>NRBP_MOUSE (Q99J45) Nuclear receptor-binding protein (MLF1 adapter molecule)|
           (HLS7-interacting protein kinase)
          Length = 535

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 IRQH*RRQGVITEE*KRRSMVAFLSLTHMHAQTLNEAGWARW 238
           ++++  R   ITE     S+  FL  T  + +T+NE  W RW
Sbjct: 139 VKENKARVIFITEYMSSGSLKQFLKKTKKNHKTMNEKAWKRW 180

>TELT_MOUSE (O70548) Telethonin (Titin cap protein)|
          Length = 167

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +2

Query: 206 QTLNEAGWARWRSSTANTKPVRLCG*LAPDGHEEQYCHR 322
           Q   EA WA W+  T +T+P   C     D    +  HR
Sbjct: 15  QERREAFWAEWKDLTLSTRPEEGCSLHEEDTQRHETYHR 53

>CYC6_SYNY3 (P46445) Cytochrome c6 precursor (Soluble cytochrome f) (Cytochrome|
           c553) (Cytochrome c-553)
          Length = 120

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   SHNKLIIHAPNCSTCHSQRLYRFNPTPTL 91
           +H K I  A NC+ CH+  L   NP+ TL
Sbjct: 39  AHGKAIF-AGNCAACHNGGLNAINPSKTL 66

>VIF_CAEVC (P33462) Virion infectivity factor (Q protein) (SOR protein)|
          Length = 229

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/50 (30%), Positives = 18/50 (36%)
 Frame = -1

Query: 321 RWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHPASFSVCACM*VRERKAT 172
           RW  C SC  G    H RT  +  ++LL       F V      R    T
Sbjct: 150 RWDLCKSCAQGEVVKHTRTKSLERLVLLQMVEQHVFQVLPLWRARRSSTT 199

>UBR1_CAEEL (P91133) Ubiquitin-protein ligase E3 component N-recognin (EC|
            6.-.-.-) (Ubiquitin-protein ligase E3-alpha)
          Length = 1927

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 363  QPEQLSTPANNLMQRWQYCSSCPSGAS*PHKRTGFVLAVLLLHRAHP 223
            +P+   TP + L+      S  P+ A  PH  T F   V L + A P
Sbjct: 1562 RPKLAQTPGSPLLSAPSTSSFTPAPAQIPHSGTNFAFLVQLFNPAGP 1608

>ZN297_MOUSE (Q9Z0G7) Zinc finger protein 297 (BING1 protein)|
          Length = 638

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -2

Query: 323 NGGSTAPRVHPALASHTNGRASCWQYCSSIVPIRPR 216
           NGG+ AP    ++ SHT+ RAS  Q  SS     PR
Sbjct: 178 NGGTVAPATVGSVRSHTSSRASENQSPSSSNYFSPR 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,646,226
Number of Sequences: 219361
Number of extensions: 910106
Number of successful extensions: 1973
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1973
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)