ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67d03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYRF_PROMP (Q7V0D8) Orotidine 5'-phosphate decarboxylase (EC 4.1... 28 7.7

>PYRF_PROMP (Q7V0D8) Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (OMP|
           decarboxylase) (OMPDCase) (OMPdecase)
          Length = 239

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 140 TATTPAQINQSSNLNQRHCMQLHANPLACTYPRGCGDVSRLIISTCMVHAPA 295
           T   P+ I    NLN++  + L  + +  T    C +VS+L +    VHA A
Sbjct: 43  TREGPSVIKILKNLNKKIFLDLKFHDIPNTMSAACYEVSKLGVDIISVHASA 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,498,457
Number of Sequences: 219361
Number of extensions: 591235
Number of successful extensions: 1282
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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