ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet67a02 |
|---|---|
| Clone Library Name | barley_pub |
>CB4B_LYCES (P27525) Chlorophyll a-b binding protein CP24 10B, chloroplast| precursor (CAB-10B) (LHCP) Length = 256 Score = 68.6 bits (166), Expect = 4e-12 Identities = 34/36 (94%), Positives = 35/36 (97%) Frame = -2 Query: 369 RLKVAEIKHSRLAMLAMLIFYFEAEQGKTPLGALGL 262 RLK+AEIKHSRLAMLAMLIFYFEA QGKTPLGALGL Sbjct: 221 RLKLAEIKHSRLAMLAMLIFYFEAGQGKTPLGALGL 256
>CB4A_LYCES (P27524) Chlorophyll a-b binding protein CP24 10A, chloroplast| precursor (CAB-10A) (LHCP) Length = 256 Score = 68.6 bits (166), Expect = 4e-12 Identities = 34/36 (94%), Positives = 35/36 (97%) Frame = -2 Query: 369 RLKVAEIKHSRLAMLAMLIFYFEAEQGKTPLGALGL 262 RLKVAEIKH+RLAMLAMLIFYFEA QGKTPLGALGL Sbjct: 221 RLKVAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 256
>CB4_SPIOL (P36494) Chlorophyll a-b binding protein CP24, chloroplast| precursor Length = 261 Score = 67.4 bits (163), Expect = 8e-12 Identities = 33/36 (91%), Positives = 35/36 (97%) Frame = -2 Query: 369 RLKVAEIKHSRLAMLAMLIFYFEAEQGKTPLGALGL 262 RLK+AEIKH+RLAMLAMLIFYFEA QGKTPLGALGL Sbjct: 226 RLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 261
>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast| precursor (LHCII protein 4.3) (LHCB4.3) Length = 276 Score = 37.7 bits (86), Expect = 0.007 Identities = 21/34 (61%), Positives = 25/34 (73%), Gaps = 1/34 (2%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEAE-QGKTPLGAL 268 LK+AEIKHSRLAM+A LIF +A GK P+ L Sbjct: 238 LKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 32.3 bits (72), Expect = 0.29 Identities = 18/32 (56%), Positives = 24/32 (75%), Gaps = 1/32 (3%) Frame = -2 Query: 369 RLKVAEIKHSRLAMLAMLIFYFE-AEQGKTPL 277 +L++AEIKH+RLAM+A L F + A GK PL Sbjct: 237 QLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29| Length = 279 Score = 31.6 bits (70), Expect = 0.49 Identities = 22/50 (44%), Positives = 27/50 (54%) Frame = -2 Query: 369 RLKVAEIKHSRLAMLAMLIFYFEAEQGKTPLGALGL*DDFWLARGGRKGL 220 RLK AEIKH+RLAM++ F + + T GALG F KGL Sbjct: 232 RLKTAEIKHARLAMVS--FFGYGVQALSTGEGALGSLAKFADGLNNGKGL 279
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 31.2 bits (69), Expect = 0.64 Identities = 15/23 (65%), Positives = 18/23 (78%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA 298 LKV EIK+ RLAM AML F+ +A Sbjct: 221 LKVKEIKNGRLAMFAMLGFFIQA 243
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 30.8 bits (68), Expect = 0.84 Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = -2 Query: 369 RLKVAEIKHSRLAMLAMLIFYFE-AEQGKTPL 277 +L++AEIKH+RLAM+ L F + A GK PL Sbjct: 234 QLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 265
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPLGAL 268 LKV EIK+ RLAM +M F+ +A GK PL L Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNL 244
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K RLAML+M F+ +A GK PL Sbjct: 209 LKVKELKKGRLAMLSMFGFFVQAIVTGKGPL 239
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 239
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQALVTGKGPL 240
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 189 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 219
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 212 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 242
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 238
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 60 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 90
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 205 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 235
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK PL Sbjct: 68 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 98
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM A L F+ +A GK P+ Sbjct: 218 LKVKEIKNGRLAMFACLGFFVQAIVTGKGPI 248
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 29.6 bits (65), Expect = 1.9 Identities = 15/23 (65%), Positives = 17/23 (73%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA 298 LKV EIK+ RLAM ML FY +A Sbjct: 66 LKVKEIKNGRLAMSGMLGFYAQA 88
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 206 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 236
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 209 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 239
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 181 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 211
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 199 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 229
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 94 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 124
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 210 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 240
>HEMH_SYNP6 (Q5N2B2) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 387 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = -2 Query: 357 AEIKHSRLAMLAMLIFYFEAEQGKTPLGALGL 262 AE+ + R+AML L E G+ PL ALGL Sbjct: 355 AEVWNGRIAMLGFLALLVELLTGRGPLHALGL 386
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 222 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 252
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 150 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 180
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 218 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 248
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 212 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 242
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 213 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 243
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 237
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 208 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 238
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM +M F+ +A GK P+ Sbjct: 208 LKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 238
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK PL Sbjct: 200 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 230
>RPA2_NEUCR (O74633) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1234 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 60 ITWYIRWRKKEYLIPHSIYTRHLKEVTDTD 149 +T+ WRK EYLIP + + L E D + Sbjct: 252 VTFRFSWRKNEYLIPVMMIMKALVETNDRE 281
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA 298 LK+ EIK+ RLAMLA+L ++ +A Sbjct: 221 LKLKEIKNGRLAMLAILGYFIQA 243
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK P+ Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK P+ Sbjct: 209 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 239
>HEMH_SYNPX (Q7U5G0) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -2 Query: 357 AEIKHSRLAMLAMLIFYFEAEQGKTPLGALGL 262 +E+ + RLAML F E G PL ALGL Sbjct: 359 SEVWNGRLAMLGFSAFLLELISGHGPLHALGL 390
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 L+V EIK+ RLAM +M F+ +A GK PL Sbjct: 210 LEVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 240
>EMAL2_HUMAN (O95834) Echinoderm microtubule-associated protein-like 2 (EMAP-2)| (HuEMAP-2) Length = 649 Score = 28.5 bits (62), Expect = 4.2 Identities = 10/41 (24%), Positives = 19/41 (46%) Frame = -3 Query: 254 IFGWRAVGERVCCIASDRTHGLNGICSTSNKQQHFICVRDF 132 + G VCC+ +++G N +C+ H + V D+ Sbjct: 152 VLGLGVFDRAVCCVGFSKSNGGNLLCAVDESNDHMLSVWDW 192
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK P+ Sbjct: 207 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 237
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E K+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKETKNGRLAMFSMFGFFIQAIVTGKGPL 241
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK P+ Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ +A GK P+ Sbjct: 211 LKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 241
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 +KV E+K+ RLAM +M F+ +A GK PL Sbjct: 209 VKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 239
>FA20A_MOUSE (Q8CID3) Protein FAM20A precursor| Length = 541 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/53 (32%), Positives = 26/53 (49%) Frame = +1 Query: 199 VRSDAMQQTLSPTARQPKIIL*TERAERRLALFGLEVEDEHGKHGEARVLDLG 357 +R ++ LSP +P ++ +RRL + VED HGE RV+ G Sbjct: 477 MRESLLEDQLSPVLTEPHLLA----LDRRLQIILKTVEDCIEAHGERRVIAEG 525
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 +KV EIK+ RLAM +M F+ +A GK P+ Sbjct: 222 VKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 252
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV EIK+ RLAM + L F+ +A GK P+ Sbjct: 197 LKVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227
>RPA2_ASHGO (Q75DS1) DNA-directed RNA polymerase I polypeptide 2 (EC 2.7.7.6)| (RNA polymerase I subunit 2) Length = 1198 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +3 Query: 60 ITWYIRWRKKEYLIPHSIYTRHLKEVTDTD 149 +T+ WRK EYL+P + + L + +D + Sbjct: 252 VTFRFSWRKNEYLVPVVLILKALTDASDRE 281
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV E+K+ RLAM +M F+ A GK PL Sbjct: 172 LKVKELKNGRLAMFSMFGFFVPAIVTGKGPL 202
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA-EQGKTPL 277 LKV IK+ RLAM +M F+ +A GK PL Sbjct: 211 LKVKHIKNGRLAMFSMFGFFVQAIVTGKGPL 241
>KITH_RHOSI (Q9ZIG2) Thymidine kinase (EC 2.7.1.21)| Length = 213 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +2 Query: 212 RCNKPFLPPRASQKSSYRPSAPSGVLP 292 RC + F PPR + SS + AP+ P Sbjct: 182 RCRRCFQPPRPTSTSSLKAPAPAATAP 208
>HEMH_PROMA (Q7VD58) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme| synthetase) Length = 391 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 357 AEIKHSRLAMLAMLIFYFEAEQGKTPLGALGL 262 AE+ + R+AM +I +FE G PL +GL Sbjct: 359 AEVWNGRVAMFVFIICFFELVIGNGPLHYIGL 390
>RPA2_SCHPO (Q9P7X8) Probable DNA-directed RNA polymerase I polypeptide 2 (EC| 2.7.7.6) (RNA polymerase I subunit 2) Length = 1227 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 78 WRKKEYLIPHSIYTRHLKEVTDTD 149 WRK EYLIP + + L E +D + Sbjct: 296 WRKNEYLIPSMMILKALLETSDKE 319
>CCAC_AMPCA (P55738) Caroteno-chlorophyll a-c binding protein (Fragment)| Length = 102 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -2 Query: 369 RLKVAEIKHSRLAMLAMLIFYFEAEQGKTP 280 +L EIKH R+AMLA + + + GK P Sbjct: 31 KLAQTEIKHGRVAMLATMGYITQEITGKLP 60
>CB2_MALDO (P15773) Chlorophyll a-b binding protein AB10, chloroplast| precursor (LHCII type I CAB-AB10) (LHCP) Length = 268 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -2 Query: 366 LKVAEIKHSRLAMLAMLIFYFEA 298 LKV E+K+ RLAM +M F+ +A Sbjct: 212 LKVKELKNGRLAMFSMFGFFVQA 234
>ANFB_FUGRU (Q805D7) Brain natriuretic peptide precursor (B-type natriuretic| peptide) Length = 133 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 9/64 (14%) Frame = +3 Query: 126 LKEVTDTDKMLLLVRRRADPIQSM---------RPI*CDATNPFSHRAPAKNHLIDRARR 278 + E T+ D+M+ +P+ SM RP+ +A F KN D +RR Sbjct: 45 MSEETEEDQMVPANSESLEPVGSMKQTANRDQIRPVEVEAIREFLSANTRKNVQNDSSRR 104 Query: 279 AASC 290 ++SC Sbjct: 105 SSSC 108 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,350,178 Number of Sequences: 219361 Number of extensions: 952496 Number of successful extensions: 2670 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 2605 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2670 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
