ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet67a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precu... 30 2.2
2CBIO1_MYCMS (Q6MSQ2) Cobalt import ATP-binding protein cbiO 1 29 2.9
3CBIO2_MESFL (Q6F1W4) Cobalt import ATP-binding protein cbiO 2 28 5.0

>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 340

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 115 PDLVEPITHVVSLVTNQTFNNQQHVALYGTRLL 213
           PD  +  THV ++   Q FN+Q+ VAL G   L
Sbjct: 194 PDASQGATHVRNVFNRQGFNDQEMVALIGAHAL 226



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>CBIO1_MYCMS (Q6MSQ2) Cobalt import ATP-binding protein cbiO 1|
          Length = 303

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = -2

Query: 161 FVTRETTCVIGSTRSGVST--EFTSGLCVS 78
           F   + TCVIG+T SG ST  + T+GL +S
Sbjct: 48  FKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 77



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>CBIO2_MESFL (Q6F1W4) Cobalt import ATP-binding protein cbiO 2|
          Length = 315

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
 Frame = -2

Query: 152 RETTCVIGSTRSGVST--EFTSGLCVS 78
           ++ TCVIG+T SG ST  + T+GL +S
Sbjct: 61  KKITCVIGTTGSGKSTMIQLTNGLLIS 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,033,915
Number of Sequences: 219361
Number of extensions: 470409
Number of successful extensions: 1006
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
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