ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet66g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 168 1e-38
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
3dbj|AK062734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 168 1e-38
5dbj|AK119964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 9e-30
6emb|AJ303111.1|HVU303111 Hordeum vulgare partial mRNA for lectin... 72 2e-09
7dbj|AK120284.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
8dbj|AK062126.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
9ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative... 44 0.38
10ref|NM_196355.1| Oryza sativa (japonica cultivar-group) putative... 44 0.38
11gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
12gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar N... 44 0.38
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
14dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
15dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.38
16dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.38
17dbj|AK108922.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
18gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.38
19ref|NM_186143.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
20ref|NM_186138.2| Oryza sativa (japonica cultivar-group), mRNA 42 1.5
21gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.5
22emb|Y18862.1|SAMY18862 Streptomyces ambofaciens NRRL2240 sar gen... 42 1.5
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
24dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
25dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
26dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
27dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
28dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
29dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
30emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 42 1.5
31emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left termina... 42 1.5
32gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 6.0
33ref|XM_430279.1| PREDICTED: Gallus gallus hypothetical gene supp... 40 6.0
34gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, comple... 40 6.0
35gb|AC116323.6| Mus musculus BAC clone RP23-281F3 from 8, complet... 40 6.0
36emb|CR936321.10| Zebrafish DNA sequence from clone CH211-209A2 i... 40 6.0
37gb|AC115283.3| Homo sapiens chromosome 3 clone RP11-632K8, compl... 40 6.0
38emb|CR390716.1| Gallus gallus finished cDNA, clone ChEST596h18 40 6.0
39dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 6.0 
>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0090F16, complete sequence
          Length = 147341

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Plus

                                                                         
Query: 289   acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 348
             ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 83581 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 83640

                                                                         
Query: 349   agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 408
             | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 83641 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 83700

                                                  
Query: 409   cgccggtgtcgtcgcgccccatcacggtcaccgagct 445
             ||||||||||||||||||| |  ||||||||||||||
Sbjct: 83701 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 83737



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Plus

                                                                         
Query: 319   ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 378
             ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 59932 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 59991

                                
Query: 379   cgccgaccaccggcagctc 397
             |||||||||||| ||||||
Sbjct: 59992 cgccgaccaccgacagctc 60010



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 286   ctcacgggttgacgtagatgtcgagctc 313
             |||| ||||||||||||| |||||||||
Sbjct: 59887 ctcaggggttgacgtagacgtcgagctc 59914
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Minus

                                                                            
Query: 289      acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 348
                ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 24738907 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 24738848

                                                                            
Query: 349      agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 408
                | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 24738847 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 24738788

                                                     
Query: 409      cgccggtgtcgtcgcgccccatcacggtcaccgagct 445
                ||||||||||||||||||| |  ||||||||||||||
Sbjct: 24738787 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 24738751



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                            
Query: 319      ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 378
                ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 24762556 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 24762497

                                   
Query: 379      cgccgaccaccggcagctc 397
                |||||||||||| ||||||
Sbjct: 24762496 cgccgaccaccgacagctc 24762478



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 377     gccgccgaccaccggcagctc 397
               |||||||||||||||||||||
Sbjct: 5919207 gccgccgaccaccggcagctc 5919187



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 286      ctcacgggttgacgtagatgtcgagctc 313
                |||| ||||||||||||| |||||||||
Sbjct: 24762601 ctcaggggttgacgtagacgtcgagctc 24762574
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>dbj|AK062734.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-E08, full
           insert sequence
          Length = 766

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Minus

                                                                       
Query: 289 acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 348
           ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 512 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 453

                                                                       
Query: 349 agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 408
           | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 452 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 393

                                                
Query: 409 cgccggtgtcgtcgcgccccatcacggtcaccgagct 445
           ||||||||||||||||||| |  ||||||||||||||
Sbjct: 392 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 356
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  168 bits (85), Expect = 1e-38
 Identities = 139/157 (88%)
 Strand = Plus / Minus

                                                                            
Query: 289      acgggttgacgtagatgtcgagctccagcaggtcggggcggacggtcttccacagcacgt 348
                ||||||| ||||||| ||||||||| |||||||| ||||||| |||| ||||||||||||
Sbjct: 25050577 acgggttaacgtagacgtcgagctcgagcaggtcagggcggatggtcctccacagcacgt 25050518

                                                                            
Query: 349      agcctttcgccatacggaactgccccgtgccgccgaccaccggcagctcacgcaccgcca 408
                | ||| ||||||| | ||||||||||||||| || ||||||| |||||| ||||||||| 
Sbjct: 25050517 accctctcgccatcctgaactgccccgtgccccccaccaccgtcagctcccgcaccgccg 25050458

                                                     
Query: 409      cgccggtgtcgtcgcgccccatcacggtcaccgagct 445
                ||||||||||||||||||| |  ||||||||||||||
Sbjct: 25050457 cgccggtgtcgtcgcgcccgacgacggtcaccgagct 25050421



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                            
Query: 319      ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 378
                ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 25074226 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 25074167

                                   
Query: 379      cgccgaccaccggcagctc 397
                |||||||||||| ||||||
Sbjct: 25074166 cgccgaccaccgacagctc 25074148



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 377     gccgccgaccaccggcagctc 397
               |||||||||||||||||||||
Sbjct: 5985684 gccgccgaccaccggcagctc 5985664



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 286      ctcacgggttgacgtagatgtcgagctc 313
                |||| ||||||||||||| |||||||||
Sbjct: 25074271 ctcaggggttgacgtagacgtcgagctc 25074244
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>dbj|AK119964.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D07, full
           insert sequence
          Length = 839

 Score =  139 bits (70), Expect = 9e-30
 Identities = 115/130 (88%)
 Strand = Plus / Plus

                                                                       
Query: 316 gcaggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccg 375
           ||||||| ||||||| |||| ||||||||||||| ||| ||||||| | |||||||||||
Sbjct: 1   gcaggtcagggcggatggtcctccacagcacgtaccctctcgccatcctgaactgccccg 60

                                                                       
Query: 376 tgccgccgaccaccggcagctcacgcaccgccacgccggtgtcgtcgcgccccatcacgg 435
           |||| || ||||||| |||||| ||||||||| ||||||||||||||||||| |  ||||
Sbjct: 61  tgccccccaccaccgtcagctcccgcaccgccgcgccggtgtcgtcgcgcccgacgacgg 120

                     
Query: 436 tcaccgagct 445
           ||||||||||
Sbjct: 121 tcaccgagct 130
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>emb|AJ303111.1|HVU303111 Hordeum vulgare partial mRNA for lectin, clone 4B10T7
          Length = 336

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Plus

                                                                   
Query: 327 cggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgcc 382
           ||||||||||||||||||||||| ||| | ||||| | ||||||||||||||||||
Sbjct: 90  cggacggtcttccacagcacgtaccctgtggccatcctgaactgccccgtgccgcc 145
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>dbj|AK120284.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013049N05, full
           insert sequence
          Length = 836

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 319 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 378
           ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 487 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 428

                              
Query: 379 cgccgaccaccggcagctc 397
           |||||||||||| ||||||
Sbjct: 427 cgccgaccaccgacagctc 409



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 286 ctcacgggttgacgtagatgtcgagctc 313
           |||| ||||||||||||| |||||||||
Sbjct: 532 ctcaggggttgacgtagacgtcgagctc 505
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>dbj|AK062126.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D09, full
           insert sequence
          Length = 786

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                       
Query: 319 ggtcggggcggacggtcttccacagcacgtagcctttcgccatacggaactgccccgtgc 378
           ||||| ||| ||| |||||||| || ||||||||   |||||| | ||||| ||||||||
Sbjct: 496 ggtcgaggctgaccgtcttccagaggacgtagccggacgccatcctgaactcccccgtgc 437

                              
Query: 379 cgccgaccaccggcagctc 397
           |||||||||||| ||||||
Sbjct: 436 cgccgaccaccgacagctc 418



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 286 ctcacgggttgacgtagatgtcgagctc 313
           |||| ||||||||||||| |||||||||
Sbjct: 541 ctcaggggttgacgtagacgtcgagctc 514
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>ref|NM_196360.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           protein (OSJNBb0058B20.4), mRNA
          Length = 486

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 372 cccgtgccgccgaccaccggcagctc 397
           ||||||||||||||||||||| ||||
Sbjct: 442 cccgtgccgccgaccaccggccgctc 417
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>ref|NM_196355.1| Oryza sativa (japonica cultivar-group) putative disease resistance
           response protein (OSJNBb0058B20.9), mRNA
          Length = 567

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 356 cgccatacggaactgccccgtgccgccgaccaccggcagctc 397
           |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 471 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 430
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>gb|AC021891.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone
            OSJNBa0050N08, complete sequence
          Length = 144593

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 372  cccgtgccgccgaccaccggcagctc 397
            ||||||||||||||||||||| ||||
Sbjct: 6776 cccgtgccgccgaccaccggccgctc 6801
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>gb|AC108884.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OSJNBb0058B20 from chromosome 10, complete sequence
          Length = 156232

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 356   cgccatacggaactgccccgtgccgccgaccaccggcagctc 397
             |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 33234 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 33193



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 372   cccgtgccgccgaccaccggcagctc 397
             ||||||||||||||||||||| ||||
Sbjct: 12990 cccgtgccgccgaccaccggccgctc 12965
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 372      cccgtgccgccgaccaccggcagctc 397
                ||||||||||||||||||||| ||||
Sbjct: 12907860 cccgtgccgccgaccaccggccgctc 12907885



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 356      cgccatacggaactgccccgtgccgccgaccaccggcagctc 397
                |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 12887616 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 12887657
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 394      gctcacgcaccgccacgccggt 415
                ||||||||||||||||||||||
Sbjct: 19684452 gctcacgcaccgccacgccggt 19684473
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 370     gccccgtgccgccgaccaccggcagc 395
               |||||| |||||||||||||||||||
Sbjct: 4697970 gccccgcgccgccgaccaccggcagc 4697945
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>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1136H02
          Length = 145086

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 394   gctcacgcaccgccacgccggt 415
             ||||||||||||||||||||||
Sbjct: 41210 gctcacgcaccgccacgccggt 41231
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>dbj|AK108922.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-H09, full
           insert sequence
          Length = 785

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 356 cgccatacggaactgccccgtgccgccgaccaccggcagctc 397
           |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 574 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 533
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 372      cccgtgccgccgaccaccggcagctc 397
                ||||||||||||||||||||| ||||
Sbjct: 12915200 cccgtgccgccgaccaccggccgctc 12915225



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                          
Query: 356      cgccatacggaactgccccgtgccgccgaccaccggcagctc 397
                |||||| |||||||  ||||||||||| ||||||||| ||||
Sbjct: 12894956 cgccatccggaacttgcccgtgccgcccaccaccggccgctc 12894997
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>ref|NM_186143.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 663

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 337 tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 385
           ||||||||||||||||  | ||||| |||||   |||||||||||||||
Sbjct: 526 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 478
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>ref|NM_186138.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 958

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 333 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 392
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438

                
Query: 393 agctc 397
           |||||
Sbjct: 437 agctc 433
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>gb|AC123520.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0034O04,
              complete sequence
          Length = 164882

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 377    gccgccgaccaccggcagctc 397
              |||||||||||||||||||||
Sbjct: 129091 gccgccgaccaccggcagctc 129071
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>emb|Y18862.1|SAMY18862 Streptomyces ambofaciens NRRL2240 sar gene and ORF2, ORF3 and ORF4
          Length = 5966

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 373  ccgtgccgccgaccaccggca 393
            |||||||||||||||||||||
Sbjct: 4986 ccgtgccgccgaccaccggca 5006
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                               
Query: 337    tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 385
              ||||||||||||||||  | ||||| |||||   |||||||||||||||
Sbjct: 412064 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 412112



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                          
Query: 333    gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 392
              |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 404001 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 404060

                   
Query: 393    agctc 397
              |||||
Sbjct: 404061 agctc 404065
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 337   tccacagcacgtagcctttcgccatacggaactgccccgtgccgccgac 385
             ||||||||||||||||  | ||||| |||||   |||||||||||||||
Sbjct: 14228 tccacagcacgtagccggtggccatgcggaaggcccccgtgccgccgac 14276



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                        
Query: 333  gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 392
            |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 6165 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 6224

                 
Query: 393  agctc 397
            |||||
Sbjct: 6225 agctc 6229
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>dbj|AP006186.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1317D11
          Length = 135043

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                          
Query: 333    gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 392
              |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 128239 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 128298

                   
Query: 393    agctc 397
              |||||
Sbjct: 128299 agctc 128303
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>dbj|AK119790.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-A02, full
           insert sequence
          Length = 957

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 333 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 392
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 493 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 434

                
Query: 393 agctc 397
           |||||
Sbjct: 433 agctc 429
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>dbj|AK109288.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-C06, full
           insert sequence
          Length = 1001

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 333 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 392
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 294 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 353

                
Query: 393 agctc 397
           |||||
Sbjct: 354 agctc 358
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>dbj|AK107711.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D10, full
           insert sequence
          Length = 885

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 377 gccgccgaccaccggcagctc 397
           |||||||||||||||||||||
Sbjct: 519 gccgccgaccaccggcagctc 499
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>dbj|AK106062.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-G06, full
           insert sequence
          Length = 958

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 333 gtcttccacagcacgtagcctttcgccatacggaactgccccgtgccgccgaccaccggc 392
           |||||||||| |||||||||  | ||||| | |||||  ||||||||||| ||||| | |
Sbjct: 497 gtcttccacaccacgtagccggtggccatcctgaacttgcccgtgccgcccaccacggac 438

                
Query: 393 agctc 397
           |||||
Sbjct: 437 agctc 433
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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 373    ccgtgccgccgaccaccggca 393
              |||||||||||||||||||||
Sbjct: 176689 ccgtgccgccgaccaccggca 176669
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>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat
          Length = 273746

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 373    ccgtgccgccgaccaccggca 393
              |||||||||||||||||||||
Sbjct: 176689 ccgtgccgccgaccaccggca 176669
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 310     gctccagcaggtcggggcgg 329
               ||||||||||||||||||||
Sbjct: 2613264 gctccagcaggtcggggcgg 2613245
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>ref|XM_430279.1| PREDICTED: Gallus gallus hypothetical gene supported by CR390716
           (LOC425623), partial mRNA
          Length = 1182

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 gagctccagcaggtcggggc 327
           ||||||||||||||||||||
Sbjct: 790 gagctccagcaggtcggggc 771
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>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence
          Length = 257003

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    accacaaacatccacatagc 162
              ||||||||||||||||||||
Sbjct: 242285 accacaaacatccacatagc 242266
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>gb|AC116323.6| Mus musculus BAC clone RP23-281F3 from 8, complete sequence
          Length = 182204

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   accacaaacatccacatagc 162
             ||||||||||||||||||||
Sbjct: 95380 accacaaacatccacatagc 95399
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>emb|CR936321.10| Zebrafish DNA sequence from clone CH211-209A2 in linkage group 5,
             complete sequence
          Length = 51065

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    acaaaagaatgacaagatcc 113
             ||||||||||||||||||||
Sbjct: 10647 acaaaagaatgacaagatcc 10666
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>gb|AC115283.3| Homo sapiens chromosome 3 clone RP11-632K8, complete sequence
          Length = 193486

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    caacaaaagaatgacaagat 111
             ||||||||||||||||||||
Sbjct: 81130 caacaaaagaatgacaagat 81149
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>emb|CR390716.1| Gallus gallus finished cDNA, clone ChEST596h18
          Length = 663

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 308 gagctccagcaggtcggggc 327
           ||||||||||||||||||||
Sbjct: 493 gagctccagcaggtcggggc 474
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 317     caggtcggggcggacggtct 336
               ||||||||||||||||||||
Sbjct: 1735622 caggtcggggcggacggtct 1735641


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,035,582
Number of Sequences: 3902068
Number of extensions: 3035582
Number of successful extensions: 53240
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52836
Number of HSP's gapped (non-prelim): 405
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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