ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet66f09 |
|---|---|
| Clone Library Name | barley_pub |
>PSBO_FRIAG (O49079) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 142 bits (357), Expect = 5e-34 Identities = 68/76 (89%), Positives = 73/76 (96%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL KEN+K+ SSSTG ITLSVTKSKPETGEVIGVFES+QPSDTDLG+K Sbjct: 254 VALPAGGRGDEEELVKENIKDVSSSTGKITLSVTKSKPETGEVIGVFESIQPSDTDLGSK 313 Query: 268 APKDVKIQGVWYAQLE 221 APKDVKIQG+WYAQLE Sbjct: 314 APKDVKIQGIWYAQLE 329
>PSBO_TOBAC (Q40459) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 142 bits (357), Expect = 5e-34 Identities = 69/76 (90%), Positives = 72/76 (94%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL KENVKN SSSTG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK Sbjct: 257 VALPAGGRGDEEELQKENVKNTSSSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAK 316 Query: 268 APKDVKIQGVWYAQLE 221 PKDVKIQG+WYAQLE Sbjct: 317 VPKDVKIQGIWYAQLE 332
>PSBO_WHEAT (P27665) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 325 Score = 141 bits (356), Expect = 6e-34 Identities = 73/77 (94%), Positives = 74/77 (96%) Frame = -1 Query: 445 ALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKA 266 ALP GGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL +A Sbjct: 251 ALPRGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDL--EA 308 Query: 265 PKDVKIQGVWYAQLESN 215 PKDVKIQGVWYAQLESN Sbjct: 309 PKDVKIQGVWYAQLESN 325
>PSBO_LYCES (P23322) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 138 bits (348), Expect = 5e-33 Identities = 67/76 (88%), Positives = 71/76 (93%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL KENVKN +S TG ITLSVT+SKPETGEVIGVFES+QPSDTDLGAK Sbjct: 254 VALPAGGRGDEEELQKENVKNTASLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAK 313 Query: 268 APKDVKIQGVWYAQLE 221 PKDVKIQG+WYAQLE Sbjct: 314 VPKDVKIQGIWYAQLE 329
>PSBO_PEA (P14226) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 329 Score = 138 bits (347), Expect = 7e-33 Identities = 68/77 (88%), Positives = 73/77 (94%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL KEN K+A+SS G ITLSVT++KPETGEVIGVFES+QPSDTDLGAK Sbjct: 253 VALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAK 312 Query: 268 APKDVKIQGVWYAQLES 218 APKDVKIQGVWYAQLES Sbjct: 313 APKDVKIQGVWYAQLES 329
>PSBO1_ARATH (P23321) Oxygen-evolving enhancer protein 1-1, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 136 bits (342), Expect = 3e-32 Identities = 66/76 (86%), Positives = 69/76 (90%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL KENVKN ++S G ITL VTKSKPETGEVIGVFES+QPSDTDLGAK Sbjct: 257 VALPAGGRGDEEELVKENVKNTAASVGEITLKVTKSKPETGEVIGVFESLQPSDTDLGAK 316 Query: 268 APKDVKIQGVWYAQLE 221 PKDVKIQGVWY QLE Sbjct: 317 VPKDVKIQGVWYGQLE 332
>PSBO_SOLTU (P26320) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 333 Score = 135 bits (341), Expect = 4e-32 Identities = 65/77 (84%), Positives = 70/77 (90%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL KENVKN +S TG IT +VTKS P+TGEVIGVFES+QPSDTDLGAK Sbjct: 257 VALPAGGRGDEEELQKENVKNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAK 316 Query: 268 APKDVKIQGVWYAQLES 218 PKDVKIQG+WYAQLES Sbjct: 317 TPKDVKIQGIWYAQLES 333
>PSBO2_ARATH (Q9S841) Oxygen-evolving enhancer protein 1-2, chloroplast| precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 331 Score = 135 bits (340), Expect = 5e-32 Identities = 64/76 (84%), Positives = 70/76 (92%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL+KENVKN ++S G ITL +TKSKPETGEVIGVFES+QPSDTDLGAK Sbjct: 256 VALPAGGRGDEEELSKENVKNTAASVGEITLKITKSKPETGEVIGVFESLQPSDTDLGAK 315 Query: 268 APKDVKIQGVWYAQLE 221 PKDVKIQGVWY Q+E Sbjct: 316 VPKDVKIQGVWYGQIE 331
>PSBO_SPIOL (P12359) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) Length = 332 Score = 132 bits (333), Expect = 3e-31 Identities = 65/76 (85%), Positives = 69/76 (90%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPAGGRGDEEEL KEN KN +SS G ITLSVT SKPETGEVIGVF+S+QPSDTDLGAK Sbjct: 255 VALPAGGRGDEEELQKENNKNVASSKGTITLSVTSSKPETGEVIGVFQSLQPSDTDLGAK 314 Query: 268 APKDVKIQGVWYAQLE 221 PKDVKI+GVWYAQLE Sbjct: 315 VPKDVKIEGVWYAQLE 330
>PSBO_EUGGR (P46483) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 338 Score = 99.4 bits (246), Expect = 4e-21 Identities = 48/75 (64%), Positives = 56/75 (74%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPA G D+EE AKEN K+ ++S G I V K ETGE+ GVFES+QPSDTDLGAK Sbjct: 262 VALPASG--DDEEYAKENSKSTAASVGTIAFKVAKVNAETGEIAGVFESIQPSDTDLGAK 319 Query: 268 APKDVKIQGVWYAQL 224 PKD+K GVWYAQ+ Sbjct: 320 VPKDIKTSGVWYAQI 334
>PSBO_CHLRE (P12853) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 291 Score = 96.3 bits (238), Expect = 3e-20 Identities = 48/76 (63%), Positives = 56/76 (73%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPA R D EEL KENVK + G+ SV K P TGE+ GVFES+QPSDTDLGAK Sbjct: 218 VALPA--RADAEELLKENVKITKALKGSAVFSVAKVDPVTGEIAGVFESIQPSDTDLGAK 275 Query: 268 APKDVKIQGVWYAQLE 221 PKD+K+ G+WYAQL+ Sbjct: 276 PPKDIKVTGLWYAQLK 291
>PSBO_VOLCA (Q9SBN6) Oxygen-evolving enhancer protein 1, chloroplast precursor| (OEE1) Length = 293 Score = 94.0 bits (232), Expect = 2e-19 Identities = 47/75 (62%), Positives = 54/75 (72%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPA R D EEL KENVK+ + G+ SV K TGE+ GVFES+QPSDTDLGAK Sbjct: 219 VALPA--RADAEELLKENVKSTKALKGSAVFSVAKVNTATGEIAGVFESIQPSDTDLGAK 276 Query: 268 APKDVKIQGVWYAQL 224 PKD+KI G+WY QL Sbjct: 277 PPKDIKITGLWYGQL 291
>PSBO_ANASP (P13907) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 273 Score = 81.3 bits (199), Expect = 1e-15 Identities = 40/76 (52%), Positives = 54/76 (71%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPA + D+E+L + NVK A G I+L + K +GE+ G FES QPSDTDLGA Sbjct: 200 VALPA--QADDEDLTRTNVKRAEILNGKISLQIAKVDSSSGEIAGTFESEQPSDTDLGAD 257 Query: 268 APKDVKIQGVWYAQLE 221 PK+VKI+G++YA++E Sbjct: 258 EPKEVKIRGIFYARVE 273
>PSBO_SYNP7 (P11472) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 277 Score = 75.1 bits (183), Expect = 7e-14 Identities = 38/76 (50%), Positives = 52/76 (68%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VA+P+ G D E+L KENVK + G I+L+V+K TGEV GVF ++QPSDTD+G K Sbjct: 200 VAIPSAG--DAEDLTKENVKRFVTGQGEISLAVSKVDGATGEVAGVFTAIQPSDTDMGGK 257 Query: 268 APKDVKIQGVWYAQLE 221 DVK+ G +Y ++E Sbjct: 258 EAVDVKLVGQFYGRIE 273
>PSBO_SYNEN (P0A432) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 74.7 bits (182), Expect = 1e-13 Identities = 40/76 (52%), Positives = 51/76 (67%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 +ALP + EEELA+ NVK S + G I+L+V K TGE+ G FES Q SD D+GA Sbjct: 198 IALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAH 254 Query: 268 APKDVKIQGVWYAQLE 221 P +VKIQGV+YA +E Sbjct: 255 EPHEVKIQGVFYASIE 270
>PSBO_SYNEL (P0A431) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 272 Score = 74.7 bits (182), Expect = 1e-13 Identities = 40/76 (52%), Positives = 51/76 (67%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 +ALP + EEELA+ NVK S + G I+L+V K TGE+ G FES Q SD D+GA Sbjct: 198 IALP---QAKEEELARANVKRFSLTKGQISLNVAKVDGRTGEIAGTFESEQLSDDDMGAH 254 Query: 268 APKDVKIQGVWYAQLE 221 P +VKIQGV+YA +E Sbjct: 255 EPHEVKIQGVFYASIE 270
>PSBO_CYAA5 (Q9R6W6) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 275 Score = 74.7 bits (182), Expect = 1e-13 Identities = 41/75 (54%), Positives = 53/75 (70%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALPA D+E+ A NVK G+I+L VTK TGE+ GVF+S QPSDTDLGAK Sbjct: 201 VALPA--TADKEDYA--NVKQTPIGKGSISLQVTKVDQATGEIAGVFDSEQPSDTDLGAK 256 Query: 268 APKDVKIQGVWYAQL 224 P +VKI+G++YA++ Sbjct: 257 EPVEVKIRGIFYARV 271
>PSBO_SYNY3 (P10549) Photosystem II manganese-stabilizing polypeptide precursor| (MSP) Length = 274 Score = 67.8 bits (164), Expect = 1e-11 Identities = 33/78 (42%), Positives = 50/78 (64%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAK 269 VALP+ + + N K G ++L VT+ TGE+ G+FES QPSDTDLGAK Sbjct: 201 VALPSAA-----DKFRTNKKETPLGKGTLSLQVTQVDGSTGEIAGIFESEQPSDTDLGAK 255 Query: 268 APKDVKIQGVWYAQLESN 215 P DVK++G++Y +++++ Sbjct: 256 EPLDVKVRGIFYGRVDTD 273
>CH10_ENTFA (Q93EU7) 10 kDa chaperonin (Protein Cpn10) (groES protein)| Length = 94 Score = 34.3 bits (77), Expect = 0.14 Identities = 23/54 (42%), Positives = 28/54 (51%) Frame = -1 Query: 409 LAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQPSDTDLGAKAPKDVKI 248 +AKE K G + SV K KP+TGEVI V E + G K P +VKI Sbjct: 13 VAKEEEKTVG---GIVLASVAKEKPQTGEVIAVGEG---RVLENGTKVPMEVKI 60
>MRT4_SCHPO (Q9USZ6) mRNA turnover protein 4 homolog| Length = 241 Score = 31.2 bits (69), Expect = 1.2 Identities = 27/63 (42%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 448 VALPAGGRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES-VQPSDTDLGA 272 V A G EEE A+ K G + L T SKP+ EVIG FES VQ GA Sbjct: 72 VMAKALGHTPEEEHAENVSKLTKLLHGAVGLLFTNSKPD--EVIGYFESFVQNDFARAGA 129 Query: 271 KAP 263 AP Sbjct: 130 VAP 132
>DP13B_MOUSE (Q8K3G9) DCC-interacting protein 13 beta (Dip13 beta) (Adapter| protein containing PH domain, PTB domain and leucine zipper motif 2) Length = 662 Score = 30.8 bits (68), Expect = 1.6 Identities = 15/45 (33%), Positives = 22/45 (48%) Frame = -1 Query: 430 GRGDEEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFESVQ 296 G+ E + +N+KN+ NI T S PET E+I +Q Sbjct: 405 GKKQESSCSSQNIKNSDIEDDNIVPKATASIPETEELIAPGTPIQ 449
>MECR_RAT (Q9Z311) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) (Nuclear receptor-binding factor 1) (NRBF-1) Length = 373 Score = 30.0 bits (66), Expect = 2.7 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = -1 Query: 298 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVK--ILIFCACIR 167 QP + KD+K++G W +Q + N S E K ILI C IR Sbjct: 291 QPVTASVSMLIFKDLKLRGFWLSQWKKNHSPDEFKELILILCNLIR 336
>LEPA_PHOLL (Q7N1X3) GTP-binding protein lepA| Length = 598 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 3/78 (3%) Frame = +3 Query: 174 HAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSDGCTLSKTPITSPVSGLLLVT 353 +A ++ IFT + D W++ ++ + V D TL++ P P+ G V Sbjct: 233 NADRLGIFTPKRVDRDVLGCGEVGWLVCAIKDILGAPVGDTLTLARQPAEKPLPGFKKVK 292 Query: 354 LRV---MLPVEEDAFFTF 398 +V + PV D + F Sbjct: 293 PQVYAGLFPVSSDDYEAF 310
>MECR_MOUSE (Q9DCS3) Trans-2-enoyl-CoA reductase, mitochondrial precursor (EC| 1.3.1.38) Length = 373 Score = 29.3 bits (64), Expect = 4.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = -1 Query: 298 QPSDTDLGAKAPKDVKIQGVWYAQLESN*SIAEVKILIFCAC 173 QP + KD+K++G W +Q + N S E K LI C Sbjct: 291 QPVTASVSLLIFKDLKLRGFWLSQWKKNHSPDEFKELILTLC 332
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 29.3 bits (64), Expect = 4.6 Identities = 19/77 (24%), Positives = 36/77 (46%) Frame = +3 Query: 114 YTHKHIVASILSSPPTNPRMHAQKMSIFTSAML*LDSSCAYHTPWILTSLGALAPRSVSD 293 Y H S ++ PP P + Q+M+ TS+ ++ PW +S A+ P + S Sbjct: 474 YQHSTSAGSSVNPPPPPPPLFQQQMTTTTSSA----AASFVEQPWSSSSSRAIQPATTS- 528 Query: 294 GCTLSKTPITSPVSGLL 344 + S + +SP + ++ Sbjct: 529 ASSSSSSSASSPAAAVV 545
>ILVC_HELPJ (Q9ZMA9) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 28.9 bits (63), Expect = 6.0 Identities = 15/25 (60%), Positives = 19/25 (76%) Frame = -1 Query: 361 TLSVTKSKPETGEVIGVFESVQPSD 287 +LSV+K+K E EV+GV E VQ SD Sbjct: 52 SLSVSKAKKEGFEVLGVKELVQQSD 76
>SDHD_BACHK (Q6HKG3) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 446 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 418 EEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 302 + L++ENVK+A + K PET E G+ ES Sbjct: 39 DSPLSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77
>SDHD_BACCZ (Q63D23) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 446 Score = 28.5 bits (62), Expect = 7.9 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 418 EEELAKENVKNASSSTGNITLSVTKSKPETGEVIGVFES 302 + L++ENVK+A + K PET E G+ ES Sbjct: 39 DSPLSEENVKDAEERLKRFASYIAKVFPETKETKGIIES 77 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,689,876 Number of Sequences: 219361 Number of extensions: 999510 Number of successful extensions: 3239 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3238 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
