>CCNL2_XENTR (Q5BKF8) Cyclin-L2|
          Length = 497

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSP 328
           +RSQSP   + Q+ +PS     S+S SPSR +S SP
Sbjct: 377 SRSQSPKRRKSQSYSPSS---DSKSRSPSRSRSDSP 409

>H6ST2_MOUSE (Q80UW0) Heparan-sulfate 6-O-sulfotransferase 2 (EC 2.8.2.-)|
           (HS6ST-2) (mHS6ST-2) (Fragment)
          Length = 538

 Score = 31.6 bits (70), Expect = 0.89
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQNQ 304
           ++SQSP  +  QN NP+ ++  +++LS +   S +P+ TQ +N+
Sbjct: 464 SQSQSPGQNLSQNPNPNPNQNLTQNLSHNLTPSSNPNSTQRENR 507

>SRBS1_MOUSE (Q62417) Sorbin and SH3 domain-containing protein 1 (Ponsin)|
            (c-Cbl-associated protein) (CAP) (SH3 domain protein 5)
            (SH3P12)
          Length = 1290

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 423  SPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQNQ 304
            S +PSR   ++P Q + Q R ++P R Q   PSL  C  Q
Sbjct: 1199 SSSPSRSATVSPQQPQAQQRRVTPDRSQ---PSLDLCSYQ 1235

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -3

Query: 429 SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           S S +PSR +++  S SR QSRS S S+  SQS S
Sbjct: 476 SWSLSPSRSRSVTRSGSRSQSRSRSRSQSHSQSQS 510



 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 429 SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           S SP+ SR    + S+S+ +SRS S S  QSQS S
Sbjct: 478 SLSPSRSRSVTRSGSRSQSRSRSRSQSHSQSQSHS 512

>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 307
           ++S+   P+  ++ + S S+ +SRS SPSR  S+SPS ++ ++
Sbjct: 443 SKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRS 485

>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRC---QSQSPS 325
           +RS+S + S   +   S+SR  SRS SPSRC   +S+SP+
Sbjct: 285 SRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCASSRSRSPA 324

>NCAP_CVCAE (Q04700) Nucleocapsid protein (N structural protein) (NC)|
          Length = 382

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = -3

Query: 417 NPSRCQNLNPSQSRCQSRSLSPSRCQSQS 331
           N SR  + +PSQSR QSR+ S SR + QS
Sbjct: 154 NQSRDNSRSPSQSRSQSRNRSQSRGRQQS 182

>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQNQ 304
           +RS+SP P R ++ + S SR +SRS S S  +S +P   Q   Q
Sbjct: 714 SRSRSPAPIRGRSYSRSVSRSRSRSYSRSVSRSPTPPRRQAPAQ 757

>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells|
            cyclophilin-related protein) (NK-TR protein)
          Length = 1462

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = -3

Query: 429  SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLT 319
            SQS +PSR ++ + ++SR ++RS+S S  +S+S S T
Sbjct: 1309 SQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSST 1345

>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -3

Query: 435 NRSQSPN-PSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 307
           N    PN PS  ++ + S S+ +SRS S SR  S+SPS ++ ++
Sbjct: 447 NSKSKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSRS 490

>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           +RS+SP P R +  + S+SR +SRS S    +S+SPS
Sbjct: 236 SRSRSP-PKRSRRESKSKSRSRSRSRSADNRKSRSPS 271

>GUX1_HUMGT (P15828) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)|
           (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase)
           (Beta-glucancellobiohydrolase)
          Length = 525

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 210 TIDVMLTYDSRRRRRSTPSGATMCYFQNKW 121
           T+   +T DS  R     SG+T CY  NKW
Sbjct: 45  TVQASITLDSNWRWTHQVSGSTNCYTGNKW 74

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -3

Query: 429 SQSPNPSRCQNLNPSQSRC----QSRSLSPSRCQSQSPS 325
           S S +PSR ++L  S+S      QSRS S SR QS SPS
Sbjct: 482 SWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPS 520



 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = -3

Query: 432 RSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           RS+S +PS  Q+ + S+SR QS S SP+R +   P+
Sbjct: 495 RSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPA 530



 Score = 28.9 bits (63), Expect = 5.8
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           +RS+S   SR  + +PSQSR +SRS      +SQSPS
Sbjct: 488 SRSRSLTRSRSHSPSPSQSRSRSRS------RSQSPS 518

>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = -3

Query: 435 NRSQSP---NPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           +RS SP    PS+ ++++P   R  SRS S SR +S+S S
Sbjct: 299 SRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRS 338

>CWC22_YARLI (Q6C8C5) Pre-mRNA-splicing factor CWC22|
          Length = 954

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 435 NRSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           +R ++ +P R +  + S SR  SRS S SR  S+SPS
Sbjct: 838 SRDRTGSPPRGRRRSRSYSRSPSRSYSRSRSYSRSPS 874

>VE2_HPV17 (P36785) Regulatory protein E2|
          Length = 452

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 17/35 (48%), Positives = 22/35 (62%)
 Frame = -3

Query: 429 SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           S+SPN  R  +     +R QSRSLS SR +S+S S
Sbjct: 296 SRSPNRGRGGSSGGPTTRSQSRSLSRSRSRSRSRS 330

>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 432 RSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPS 325
           R  SP  S  ++ + S+SR +SRS S SR  S+SPS
Sbjct: 221 RRASPKYSPRRSRSRSRSRSRSRSRSASRSPSRSPS 256

>VE2_HPV21 (P50767) Regulatory protein E2|
          Length = 503

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = -3

Query: 432 RSQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQ 316
           RS+S + SR ++ +  +SR +SRS S SR +SQS    Q
Sbjct: 266 RSRSKSRSRSRSRSRLRSRSRSRSRSYSRSRSQSSDQPQ 304

>RPM1_CAEEL (Q17551) Ubiquitin ligase protein rpm-1 (EC 6.3.2.-)|
            (Pam/highwire/rpm-1 protein) (Regulator of presynaptic
            morphology protein 1) (Synapse defective protein 3)
          Length = 3766

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 105  LAGYYATYSGNSTSWLRTGSISSSFGCHM*ASH 203
            L+G+ +T +G    WL TGS+  +  C +  SH
Sbjct: 1963 LSGHTSTSAGFLAKWLPTGSVVDASKCQLSLSH 1995

>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor|
          Length = 2316

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = -3

Query: 429 SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 307
           SQS + S  ++L+ S+S  +S SLS S   S S SL++ ++
Sbjct: 854 SQSLSLSASESLSESESLSESESLSESESLSASESLSESES 894



 Score = 28.1 bits (61), Expect = 9.9
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -3

Query: 429 SQSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQSPSLTQCQN 307
           SQS + S   +L+ S+S  QS SLS S   SQS SL+  ++
Sbjct: 824 SQSLSLSHSLSLSESESTSQSLSLSTSESLSQSLSLSASES 864

>GUX1_NEUCR (P38676) Exoglucanase 1 precursor (EC 3.2.1.91)|
           (Exocellobiohydrolase 1) (1,4-beta-cellobiohydrolase)
          Length = 516

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 210 TIDVMLTYDSRRRRRSTPSGATMCYFQNKWHS 115
           T++  +  D+  R     SG+T CY  NKW +
Sbjct: 43  TLNTTMVLDANWRWTHATSGSTKCYTGNKWQA 74

>VE2_HPV25 (P36787) Regulatory protein E2|
          Length = 502

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = -3

Query: 426 QSPNPSRCQNLNPSQSRCQSRSLSPSRCQSQS 331
           +S + SR ++ + S+SR +SRS S SR +SQS
Sbjct: 266 RSRSKSRSRSRSQSRSRIRSRSRSRSRSESQS 297


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,141,996
Number of Sequences: 219361
Number of extensions: 577061
Number of successful extensions: 2044
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)