ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet66f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme... 150 1e-36
2DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme... 102 3e-22
3DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme... 100 3e-21
4SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog 29 6.3
5BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (E... 28 8.2

>DCAM_HORCH (Q42829) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 393

 Score =  150 bits (380), Expect = 1e-36
 Identities = 75/84 (89%), Positives = 79/84 (94%), Gaps = 2/84 (2%)
 Frame = -2

Query: 452 EAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGK 273
           EAYDCNN+VEQELPCGGVLIYQSF ANEE+AVSAGSPRSVFHCF  ENVESGHPLVKEGK
Sbjct: 312 EAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHCF--ENVESGHPLVKEGK 369

Query: 272 LANLLAWRAEEDSLEE--GAVLCE 207
           LANLLAWRAEE+SLEE  GA+LCE
Sbjct: 370 LANLLAWRAEEESLEEGTGALLCE 393



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>DCAM_ORYSA (O24215) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 398

 Score =  102 bits (255), Expect = 3e-22
 Identities = 51/76 (67%), Positives = 60/76 (78%)
 Frame = -2

Query: 452 EAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESGHPLVKEGK 273
           +AY CNN+VEQELPCGG+LIYQSF A E+V V+ GSP+SV HCFE EN+ +  P VKEGK
Sbjct: 319 DAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHCFEAENMVNPAP-VKEGK 377

Query: 272 LANLLAWRAEEDSLEE 225
           L NLL W   ED+LEE
Sbjct: 378 LGNLLPW--GEDALEE 391



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>DCAM_MAIZE (O24575) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 400

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 50/79 (63%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
 Frame = -2

Query: 452 EAYDCNNIVEQELPCGGVLIYQSFTANEEVAVSAGSPRSVFHCFEGENVESG-HPLVKEG 276
           E YDCNN+VEQELP GG+L+YQSF A E+    A SP+SVFHCF+GENVES   P+ K+ 
Sbjct: 319 EVYDCNNMVEQELPGGGLLVYQSFCAAEDAV--ATSPKSVFHCFDGENVESAPPPMKKDY 376

Query: 275 KLANLLAWRAEEDSLEEGA 219
           KLANLL W  E D++EE A
Sbjct: 377 KLANLLCWEEEADAMEEKA 395



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>SMI1_YARLI (Q6CDX0) KNR4/SMI1 homolog|
          Length = 713

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -2

Query: 356 SAGSPRSVFHCFEGENVESGHPLVKEGKLANLLAWRAEEDSLEEGAV 216
           +AGSP S            G P+    +  N+ +W A +DS+ EGAV
Sbjct: 260 NAGSPNSS---------TPGSPVASVARQKNISSWLASQDSVPEGAV 297



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>BSL3_ARATH (Q9SHS7) Serine/threonine-protein phosphatase BSL3 (EC 3.1.3.16)|
           (BSU1-like protein 3)
          Length = 715

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
 Frame = +3

Query: 204 SLAQHRALLQRILLRPPCEQVGKLAFLDQRVAALHILALEAVEDG-----PGRPGGDSNL 368
           S A H A        PP    G+  F D+R   L   A +AV  G     P  P G  +L
Sbjct: 301 SAASHAAAAAAATNTPPGRSPGRYGFSDERTGELPESAPDAVVLGSPVAPPATPSGKPSL 360

Query: 369 FI--RGKALVDEDAPAGELLLHDVV 437
            +     A+ +   PAG  L H  V
Sbjct: 361 SLIKPDSAVPNSVIPAGVRLHHRAV 385


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,699,558
Number of Sequences: 219361
Number of extensions: 1012728
Number of successful extensions: 2963
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2959
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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