>YC9D_SCHPO (Q09887) Putative amino-acid permease C584.13|
          Length = 544

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 19/34 (55%), Positives = 23/34 (67%)
 Frame = -2

Query: 337 TRDTLNYTPVAVGGLFILVLTSWVVSARHWFKGP 236
           T D +N+T V  GG  ++VL  W VSAR WFKGP
Sbjct: 478 TPDAMNWTCVVFGGPMLMVLIWWFVSARKWFKGP 511

>AAP2_NEUCR (O59942) Amino acid permease 2|
          Length = 541

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = -2

Query: 355 PVMYPVTRDTLNYTPVAVGGLFILVLTSWVVSARHWFKGPVTN 227
           P   PVT + +NY  V    + I  L  W    RH++ GP+T+
Sbjct: 484 PTRLPVTPENMNYAIVVFFFVLIFALVFWYTHGRHYYTGPLTH 526

>YFZ1_SCHPO (Q9US40) Putative amino-acid permease C1039.01|
          Length = 567

 Score = 35.0 bits (79), Expect = 0.045
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 337 TRDTLNYTPVAVGGLFILVLTSWVVSARHWFKGP 236
           T   +N+T +  GG  +  L  + +SAR WFKGP
Sbjct: 497 TAQEMNWTCLVYGGPMLFTLVWYAISARKWFKGP 530

>GPT1_CANAL (O74248) Putative polyamine transporter|
          Length = 553

 Score = 34.3 bits (77), Expect = 0.077
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -2

Query: 340 VTRDTLNYTPVAVGGLFILVLTSWVVSARHWFKGPVTNLS 221
           +T   +N+T +   GL +L    +VV AR W+ GP TN+S
Sbjct: 478 LTPTEMNWTCLVYFGLILLTTIWFVVYARRWYVGPRTNIS 517

>YCT3_SCHPO (O59813) Putative amino-acid permease C794.03|
          Length = 554

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -2

Query: 355 PVMYPVTRDTLNYTPVAVGGLFILVLTSWV-VSARHW 248
           P  YPVT    NY PV  G + I  L SW+ + A  W
Sbjct: 479 PKAYPVTGKNFNYAPVIFGAITIFGLISWLSIPASRW 515

>UGA4_YEAST (P32837) GABA-specific permease (GABA-specific transport protein)|
          Length = 571

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = -2

Query: 352 VMYP-----VTRDTLNYTPVAVGGLFILVLTSWVVSARHWFKGPVTNLS 221
           VM+P     +T+ T+NY  V   G++IL    + V  + ++ GP TNLS
Sbjct: 501 VMFPSQQHGITKSTMNYACVIGPGIWILAGIYYKVYKKKYYHGPATNLS 549

>YCQ4_SCHPO (O74537) Putative amino-acid permease C74.04|
          Length = 557

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 325 LNYTPVAVGGLFILVLTSWVVSARHWFKGPVTNLS 221
           +N+T +  G   + VL  + +S R WFKGP  NL+
Sbjct: 496 MNWTCLVFGAPMLAVLIWYAISGRKWFKGPRINLA 530

>FLRT2_HUMAN (O43155) Leucine-rich repeat transmembrane protein FLRT2 precursor|
           (Fibronectin-like domain-containing leucine-rich
           transmembrane protein 2)
          Length = 660

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 18/61 (29%), Positives = 23/61 (37%)
 Frame = -1

Query: 329 HAQLHAGRRRRALHPRLDVVGRQCQALVQGTRHQFERLASKCVDGTPWRITCTLQLYVGW 150
           H  L A    R L  RLD+   Q + L QG       L        PW   C+++    W
Sbjct: 266 HIPLTAFSNLRKLE-RLDISNNQLRMLTQGVFDNLSNLKQLTARNNPWFCDCSIKWVTEW 324

Query: 149 L 147
           L
Sbjct: 325 L 325

>ATP6_HAEIN (P43719) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)|
          Length = 262

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 227 FERLASKCVDGTPWRITCTLQLYVGWLHGCV 135
           F R+  K   G P ++ C +++ V W++G V
Sbjct: 45  FSRVGKKATTGVPGKMQCLVEIVVEWVNGIV 75

>YFYA_SCHPO (Q9UT18) Putative amino-acid permease C9.10|
          Length = 591

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 355 PVMYPVTRDTLNYTPVAVGGLFILVLTSWVV 263
           P  YPVT  + NY  V +GG+ I  +   +V
Sbjct: 533 PYTYPVTGPSFNYAVVIMGGVSIFAIICTIV 563

>MOT1_YEAST (P32333) TATA-binding protein-associated factor MOT1 (EC 3.6.1.-)|
           (TBP-associated factor MOT1) (Modifier of transcription
           1)
          Length = 1867

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/61 (31%), Positives = 30/61 (49%)
 Frame = -2

Query: 358 LPVMYPVTRDTLNYTPVAVGGLFILVLTSWVVSARHWFKGPVTNLSG*LQSVLTERRGGL 179
           +P +YP  R +++    AV  L I  L+    S ++W  G V  L    Q++L E+   L
Sbjct: 547 VPKLYPFLRHSISSVRRAVLNLLIAFLSIKDDSTKNWLNGKVFRLV--FQNILLEQNPEL 604

Query: 178 L 176
           L
Sbjct: 605 L 605

>NU4M_LOXAF (Q2I3F2) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 4)
          Length = 459

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 36  PPSRPVVLNEVITITTSLMWKAFVFHEPLLRISYTTM 146
           PP    ++ E++ ITTS  W  F      L +  TTM
Sbjct: 369 PPPTINLIGELLIITTSFSWSNFTIFPMGLNVLITTM 405

>HNM1_YEAST (P19807) Choline transport protein|
          Length = 563

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 361 SLPVMYPVTRDTLNYTPVAVGGLFILVLTSWVVSARHWF 245
           S P + PVT+D +NY  V + G     +  W    +  F
Sbjct: 480 SFPPVLPVTKDNMNYVCVVIVGYTAYSILYWKYKGKKEF 518


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,167,300
Number of Sequences: 219361
Number of extensions: 1028905
Number of successful extensions: 2079
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2079
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)