ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet66d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TENS1_HUMAN (Q9HBL0) Tensin-1 32 0.52
2AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4) 31 0.68
3TENS1_BOVIN (Q9GLM4) Tensin-1 30 1.2
4AROB_NITWN (Q3SVM8) 3-dehydroquinate synthase (EC 4.2.3.4) 28 5.7
5AROB_THICR (Q31DP9) 3-dehydroquinate synthase (EC 4.2.3.4) 28 7.5

>TENS1_HUMAN (Q9HBL0) Tensin-1|
          Length = 1735

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 127 TRSPASGRLSAFSQSTQSESVPKEPPKGLP 38
           ++SPAS  L AF  +T S   P++PP  LP
Sbjct: 811 SKSPASSSLPAFLPTTHSPPGPQQPPASLP 840



to top

>AROB_NITMU (Q2YB61) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 366

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +1

Query: 157 SILTSDISRSCHQKPSPIDRTSRY*HLKKLLSRSRRFGESLE 282
           SILT  I RSC  K   ++   R   ++ LL+    FG ++E
Sbjct: 217 SILTDAIKRSCQHKAEVVEEDERESGMRALLNLGHTFGHAIE 258



to top

>TENS1_BOVIN (Q9GLM4) Tensin-1|
          Length = 1715

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -2

Query: 124 RSPASGRLSAFSQSTQSESVPKEPPKGLP 38
           +SPA+   S+F  +TQS   P++PP  LP
Sbjct: 815 KSPATSSSSSFLPTTQSSVGPQQPPASLP 843



to top

>AROB_NITWN (Q3SVM8) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 383

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +1

Query: 127 FFTGLLVTHVSILTSDISR------SCHQKPSPIDRTSRY*HLKKLLSRSRRFGESLE 282
           FF  L V H  I+  D +R      SC  K + + R  R    + LL+    FG +LE
Sbjct: 206 FFAWLEVHHADIVKGDAAREHAVATSCRAKAAIVARDERESGERALLNLGHTFGHALE 263



to top

>AROB_THICR (Q31DP9) 3-dehydroquinate synthase (EC 4.2.3.4)|
          Length = 358

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 136 GLLVTHVSILTSDISRSCHQKPSPIDRTSRY*HLKKLLSRSRRFGESLE 282
           GLL     +L   I RSC  K + + +  +   L+ L +    FG ++E
Sbjct: 204 GLLARDPVVLAEAIERSCQNKATIVAKDEKEAGLRALFNLGHTFGHAIE 252


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,886,000
Number of Sequences: 219361
Number of extensions: 749475
Number of successful extensions: 1892
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top