ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet66d06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105945.1| Zea mays PCO115682 mRNA sequence 88 2e-14
2ref|XM_474092.1| Oryza sativa (japonica cultivar-group), predic... 74 3e-10
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
4dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
5dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
6dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
7dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
8dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
9emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 74 3e-10
10emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4,... 74 3e-10
11gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock ... 70 4e-09
12gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Ca... 44 0.23
13ref|XM_467171.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.23
14ref|NM_197679.1| Oryza sativa (japonica cultivar-group) putative... 44 0.23
15ref|XM_473863.1| Oryza sativa (japonica cultivar-group), predic... 44 0.23
16ref|XM_473862.1| Oryza sativa (japonica cultivar-group), predic... 44 0.23
17emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 44 0.23
18gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 44 0.23
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
20dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
21dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
22dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.23
23dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
24dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
25dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.23
26gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.23
27gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Can... 44 0.23
28ref|NM_197681.1| Oryza sativa (japonica cultivar-group) putative... 42 0.92
29emb|X57568.1|SGAMYLASE S.griseus DNA for alpha amylase gene, amy 42 0.92
30gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequ... 42 0.92
31dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.92
32dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.92
33gb|M18244.1|STMAMYSL Streptomyces limosus alpha-amylase gene, co... 42 0.92
34ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative... 40 3.6
35ref|XM_473581.1| Oryza sativa (japonica cultivar-group), predic... 40 3.6
36gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.6
37emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in... 40 3.6
38emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 ... 40 3.6
39gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, c... 40 3.6
40emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in... 40 3.6
41gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.6
42emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 i... 40 3.6
43emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone... 40 3.6
44dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
45dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.6
46emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, ... 40 3.6
47dbj|AK121041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
48dbj|AK069178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
49dbj|AK061150.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.6
50gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 3.6
51emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4,... 40 3.6 
>gb|AY105945.1| Zea mays PCO115682 mRNA sequence
          Length = 947

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 82/94 (87%), Gaps = 3/94 (3%)
 Strand = Plus / Minus

                                                                       
Query: 186 ggcggcacggcgcagccgcagtcgttgacgagcagctggagggcgaggggcacgtagagg 245
           ||||| ||||||||||||||||   ||||||||| || ||| |||| ||||||||||| |
Sbjct: 631 ggcgggacggcgcagccgcagt---tgacgagcacctcgagcgcgatgggcacgtagacg 575

                                             
Query: 246 gcgaggttgagcaccttggccttgatggcggtgc 279
           | || || ||||||||||||||||||||||||||
Sbjct: 574 gagatgtcgagcaccttggccttgatggcggtgc 541
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>ref|XM_474092.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 783

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                       
Query: 169 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 781 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 725

                                                              
Query: 229 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
           ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 724 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 674
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Plus

                                                                            
Query: 169      aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
                ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 32827138 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 32827194

                                                                   
Query: 229      cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
                ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 32827195 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 32827245



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 254      gagcaccttggccttgatggcggtgc 279
                |||| |||||||||||||||||||||
Sbjct: 31096025 gagcgccttggccttgatggcggtgc 31096000



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 254      gagcaccttggccttgatggcggtgc 279
                |||| |||||||||||||||||||||
Sbjct: 31085606 gagcgccttggccttgatggcggtgc 31085581



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 212      gacgagcagctggagggcga 231
                ||||||||||||||||||||
Sbjct: 28874424 gacgagcagctggagggcga 28874405
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>dbj|AK105903.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F11, full
           insert sequence
          Length = 1255

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                       
Query: 169 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875

                                                              
Query: 229 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
           ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 824
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>dbj|AK105778.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-F10, full
           insert sequence
          Length = 1242

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                       
Query: 169 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 931 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 875

                                                              
Query: 229 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
           ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 874 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 824
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>dbj|AK104623.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-H11, full
           insert sequence
          Length = 1251

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                       
Query: 169 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 927 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 871

                                                              
Query: 229 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
           ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 870 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 820
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>dbj|AK071989.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094H13, full
           insert sequence
          Length = 1272

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                       
Query: 169 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 935 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 879

                                                              
Query: 229 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
           ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 878 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 828
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>dbj|AK061322.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F03, full
           insert sequence
          Length = 1257

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                       
Query: 169 aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
           ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 933 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 877

                                                              
Query: 229 cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
           ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 876 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 826
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>emb|AL732331.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0413E07, complete
             sequence
          Length = 76546

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Plus

                                                                         
Query: 169   aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
             ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 22373 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 22429

                                                                
Query: 229   cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
             ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 22430 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 22480
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>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05,
             complete sequence
          Length = 142556

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 93/111 (83%), Gaps = 3/111 (2%)
 Strand = Plus / Plus

                                                                         
Query: 169   aggcgcaggtgtatcccggcggcacggcgcagccgcagtcgttgacgagcagctggaggg 228
             ||||||||||||| || ||||| ||| ||||||||||||   ||||||| |||| ||| |
Sbjct: 89424 aggcgcaggtgtagccaggcgggacgtcgcagccgcagt---tgacgaggagcttgagcg 89480

                                                                
Query: 229   cgaggggcacgtagagggcgaggttgagcaccttggccttgatggcggtgc 279
             ||| ||| | ||||| |  || || ||||||||||||||||||||||||||
Sbjct: 89481 cgatggggatgtagatgctgatgtcgagcaccttggccttgatggcggtgc 89531
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>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9
           (hsp16.9-17LC3) mRNA, partial cds
          Length = 440

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 64/74 (86%), Gaps = 6/74 (8%)
 Strand = Plus / Plus

                                                                       
Query: 37  gtagcactaaatgaacaaaccggaagcgagtggcttcatcgac------acaaccttgat 90
           |||| ||||||||||||||| |||||||| |||||||||||||      |||||||||||
Sbjct: 294 gtagtactaaatgaacaaacaggaagcgactggcttcatcgaccgaacaacaaccttgat 353

                         
Query: 91  ttcaaactcgtggc 104
           |||||||| |||||
Sbjct: 354 ttcaaacttgtggc 367



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                       
Query: 152 ggacggacggacggatcaggcgcaggtgtatcccggcggcacgg 195
           |||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct: 390 ggacggacgggcggatcaggcgcaggtgtagcccgggggcacgg 433
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>gb|AC154039.17| Mus musculus 10 BAC RP23-282M20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 210923

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 150    acggacggacggacggatcagg 171
              ||||||||||||||||||||||
Sbjct: 171016 acggacggacggacggatcagg 170995
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>ref|XM_467171.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 757

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 254 gagcaccttggccttgatggcggtgc 279
           |||||| |||||||||||||||||||
Sbjct: 383 gagcacgttggccttgatggcggtgc 358
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>ref|NM_197679.1| Oryza sativa (japonica cultivar-group) putative lipid transfer
           protein (OSJNBa0015J15.8), mRNA
          Length = 402

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 254 gagcaccttggccttgatggcggtgc 279
           |||||| |||||||||||||||||||
Sbjct: 315 gagcacgttggccttgatggcggtgc 290
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>ref|XM_473863.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 465

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 254 gagcaccttggccttgatggcggtgc 279
           |||| |||||||||||||||||||||
Sbjct: 375 gagcgccttggccttgatggcggtgc 350
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>ref|XM_473862.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 609

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 254 gagcaccttggccttgatggcggtgc 279
           |||| |||||||||||||||||||||
Sbjct: 501 gagcgccttggccttgatggcggtgc 476
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
             complete sequence
          Length = 160484

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 254   gagcaccttggccttgatggcggtgc 279
             |||| |||||||||||||||||||||
Sbjct: 78106 gagcgccttggccttgatggcggtgc 78081



 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 254   gagcaccttggccttgatggcggtgc 279
             |||| |||||||||||||||||||||
Sbjct: 67687 gagcgccttggccttgatggcggtgc 67662
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
             sequence
          Length = 144798

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 254   gagcaccttggccttgatggcggtgc 279
             |||||| |||||||||||||||||||
Sbjct: 34194 gagcacgttggccttgatggcggtgc 34169



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 255   agcaccttggccttgatggcggtgc 279
             ||||| |||||||||||||||||||
Sbjct: 27479 agcacgttggccttgatggcggtgc 27455
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 254      gagcaccttggccttgatggcggtgc 279
                |||||| |||||||||||||||||||
Sbjct: 21171512 gagcacgttggccttgatggcggtgc 21171537



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 255      agcaccttggccttgatggcggtgc 279
                ||||| |||||||||||||||||||
Sbjct: 21178227 agcacgttggccttgatggcggtgc 21178251



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     ccggcggcacggcgcagccg 203
               ||||||||||||||||||||
Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 254      gagcaccttggccttgatggcggtgc 279
                |||||| |||||||||||||||||||
Sbjct: 26833512 gagcacgttggccttgatggcggtgc 26833487



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 149      aacggacggacggacggatc 168
                ||||||||||||||||||||
Sbjct: 33695616 aacggacggacggacggatc 33695597
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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1001_D02
          Length = 129081

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 254   gagcaccttggccttgatggcggtgc 279
             |||||| |||||||||||||||||||
Sbjct: 12055 gagcacgttggccttgatggcggtgc 12030
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>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0516F12
          Length = 146364

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 254   gagcaccttggccttgatggcggtgc 279
             |||||| |||||||||||||||||||
Sbjct: 99565 gagcacgttggccttgatggcggtgc 99540
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>dbj|AK062781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-B03, full
           insert sequence
          Length = 713

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 254 gagcaccttggccttgatggcggtgc 279
           |||| |||||||||||||||||||||
Sbjct: 235 gagcgccttggccttgatggcggtgc 210
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>dbj|AK062911.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-G07, full
           insert sequence
          Length = 757

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 254 gagcaccttggccttgatggcggtgc 279
           |||||| |||||||||||||||||||
Sbjct: 402 gagcacgttggccttgatggcggtgc 377
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>dbj|AK058218.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F04, full
           insert sequence
          Length = 757

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 254 gagcaccttggccttgatggcggtgc 279
           |||||| |||||||||||||||||||
Sbjct: 383 gagcacgttggccttgatggcggtgc 358
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 254      gagcaccttggccttgatggcggtgc 279
                |||||| |||||||||||||||||||
Sbjct: 21182776 gagcacgttggccttgatggcggtgc 21182801



 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 255      agcaccttggccttgatggcggtgc 279
                ||||| |||||||||||||||||||
Sbjct: 21189491 agcacgttggccttgatggcggtgc 21189515



 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     ccggcggcacggcgcagccg 203
               ||||||||||||||||||||
Sbjct: 1104093 ccggcggcacggcgcagccg 1104074
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>gb|AC160060.20| Mus musculus 10 BAC RP23-360L4 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 229681

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 150   acggacggacggacggatcagg 171
             ||||||||||||||||||||||
Sbjct: 70676 acggacggacggacggatcagg 70655
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>ref|NM_197681.1| Oryza sativa (japonica cultivar-group) putative lipid transfer
           protein (OSJNBa0015J15.6), mRNA
          Length = 399

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 255 agcaccttggccttgatggcggtgc 279
           ||||| |||||||||||||||||||
Sbjct: 308 agcacgttggccttgatggcggtgc 284
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>emb|X57568.1|SGAMYLASE S.griseus DNA for alpha amylase gene, amy
          Length = 2271

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 accttggccttgatggcggtg 278
           |||||||||||||||||||||
Sbjct: 982 accttggccttgatggcggtg 962
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>gb|DQ393975.1| Cydia pomonella clone Cp4.161 microsatellite sequence
          Length = 422

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 150 acggacggacggacggatcag 170
           |||||||||||||||||||||
Sbjct: 113 acggacggacggacggatcag 93
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>dbj|AK062381.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-102-B09, full
           insert sequence
          Length = 702

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 255 agcaccttggccttgatggcggtgc 279
           ||||| |||||||||||||||||||
Sbjct: 377 agcacgttggccttgatggcggtgc 353
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>dbj|AK062295.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F05, full
           insert sequence
          Length = 570

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 259 ccttggccttgatggcggtgc 279
           |||||||||||||||||||||
Sbjct: 146 ccttggccttgatggcggtgc 126
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>gb|M18244.1|STMAMYSL Streptomyces limosus alpha-amylase gene, complete cds
          Length = 2291

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 258 accttggccttgatggcggtg 278
           |||||||||||||||||||||
Sbjct: 975 accttggccttgatggcggtg 955
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>ref|NM_194617.1| Oryza sativa (japonica cultivar-group) putative G-protein
           (OSJNBa0023I19.15), mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 184 ccggcggcacggcgcagccg 203
           ||||||||||||||||||||
Sbjct: 256 ccggcggcacggcgcagccg 237
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>ref|XM_473581.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 gacgagcagctggagggcga 231
           ||||||||||||||||||||
Sbjct: 93  gacgagcagctggagggcga 74
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>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
               Pseudo10p0.0-10p4.4, complete sequence
          Length = 2331000

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     ccggcggcacggcgcagccg 203
               ||||||||||||||||||||
Sbjct: 1104096 ccggcggcacggcgcagccg 1104077
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>emb|AL807799.5| Zebrafish DNA sequence from clone CH211-257P7 in linkage group 2,
              complete sequence
          Length = 175342

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ggaacggacggacggacgga 166
              ||||||||||||||||||||
Sbjct: 123816 ggaacggacggacggacgga 123797
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>emb|AL929566.30| Zebrafish DNA sequence from clone CH211-159C13 in linkage group 8,
             complete sequence
          Length = 137166

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   gaacggacggacggacggat 167
             ||||||||||||||||||||
Sbjct: 63584 gaacggacggacggacggat 63603
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>gb|AC079037.3| Oryza sativa chromosome 10 clone OSJNBa0023I19, complete sequence
          Length = 157450

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    ccggcggcacggcgcagccg 203
              ||||||||||||||||||||
Sbjct: 101549 ccggcggcacggcgcagccg 101530
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>emb|BX548249.13| Zebrafish DNA sequence from clone CH211-93A2 in linkage group 21,
             complete sequence
          Length = 153142

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   ggaacggacggacggacgga 166
             ||||||||||||||||||||
Sbjct: 66734 ggaacggacggacggacgga 66715
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    gctggagggcgaggggcacg 239
              ||||||||||||||||||||
Sbjct: 781004 gctggagggcgaggggcacg 780985
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>emb|AL840636.10| Zebrafish DNA sequence from clone CH211-262K7 in linkage group 20,
              complete sequence
          Length = 174999

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    ggaacggacggacggacgga 166
              ||||||||||||||||||||
Sbjct: 123472 ggaacggacggacggacgga 123453
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>emb|BX842600.1| Neurospora crassa DNA linkage group II BAC clone B15P20
          Length = 74452

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   gaacggacggacggacggat 167
             ||||||||||||||||||||
Sbjct: 73734 gaacggacggacggacggat 73753
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>dbj|AP004054.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1249_F12
          Length = 133205

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aacggacggacggacggatc 168
             ||||||||||||||||||||
Sbjct: 64023 aacggacggacggacggatc 64004
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>dbj|AP005115.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0700F06
          Length = 139277

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   aacggacggacggacggatc 168
             ||||||||||||||||||||
Sbjct: 26483 aacggacggacggacggatc 26464
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>emb|AL929281.7| Zebrafish DNA sequence from clone CH211-237I22, complete sequence
          Length = 148678

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    ggaacggacggacggacgga 166
              ||||||||||||||||||||
Sbjct: 124799 ggaacggacggacggacgga 124818
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>dbj|AK121041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052A13, full
           insert sequence
          Length = 1774

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 gacgagcagctggagggcga 231
           ||||||||||||||||||||
Sbjct: 353 gacgagcagctggagggcga 334
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>dbj|AK069178.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008D04, full
           insert sequence
          Length = 2067

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 gacgagcagctggagggcga 231
           ||||||||||||||||||||
Sbjct: 565 gacgagcagctggagggcga 546
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>dbj|AK061150.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E04, full
           insert sequence
          Length = 1634

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 gacgagcagctggagggcga 231
           ||||||||||||||||||||
Sbjct: 139 gacgagcagctggagggcga 120
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 208     cgttgacgagcagctggagggcga 231
               ||||||||||| ||||||||||||
Sbjct: 5613674 cgttgacgagcggctggagggcga 5613697
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>emb|AL606640.4|OSJN00071 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019K04,
             complete sequence
          Length = 154865

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   gacgagcagctggagggcga 231
             ||||||||||||||||||||
Sbjct: 86586 gacgagcagctggagggcga 86567


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,900,460
Number of Sequences: 3902068
Number of extensions: 1900460
Number of successful extensions: 52148
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51727
Number of HSP's gapped (non-prelim): 411
length of query: 279
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 257
effective length of database: 17,147,199,772
effective search space: 4406830341404
effective search space used: 4406830341404
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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