ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet66d03 |
|---|---|
| Clone Library Name | barley_pub |
>CB4A_ARATH (Q07473) Chlorophyll a-b binding protein CP29.1, chloroplast| precursor (LHCII protein 4.1) (LHCB4.1) Length = 290 Score = 80.5 bits (197), Expect = 9e-16 Identities = 37/38 (97%), Positives = 37/38 (97%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 238 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI DTF Sbjct: 250 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 287
>CB4B_ARATH (Q9XF88) Chlorophyll a-b binding protein CP29.2, chloroplast| precursor (LHCII protein 4.2) (LHCB4.2) Length = 287 Score = 79.0 bits (193), Expect = 3e-15 Identities = 36/38 (94%), Positives = 36/38 (94%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 238 MV FLGFAVQAAATGKGPLNNWATHLSDPLHTTI DTF Sbjct: 247 MVGFLGFAVQAAATGKGPLNNWATHLSDPLHTTIIDTF 284
>CB24_ARATH (P27521) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCI type III CAB-4) (LHCP) Length = 251 Score = 51.6 bits (122), Expect = 5e-07 Identities = 24/38 (63%), Positives = 25/38 (65%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 238 M+AFLGF VQ TGKGP N HLSDP H TI TF Sbjct: 213 MLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTIVQTF 250
>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCII type I CAB-8) Length = 268 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/31 (61%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HLSDP++ Sbjct: 224 MFSMFGFFVQAIVTGKGPLENLADHLSDPVN 254
>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 267 Score = 41.6 bits (96), Expect = 5e-04 Identities = 18/36 (50%), Positives = 24/36 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFD 244 M + GF VQA TGKGPL N A HL+DP++ ++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWN 258
>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 256 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 212 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 242
>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 261 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 217 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 247
>CB2D_LYCES (P10707) Chlorophyll a-b binding protein 1D (LHCII type I CAB-1D)| (LHCP) (Fragment) Length = 116 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 72 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 102
>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor| (Allergen Api g 3) Length = 264 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 220 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (LHCP) Length = 264 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 220 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 250
>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor| (LHCII type I CAB-E) (LHCP) Length = 266 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 222 MFSMFGFFVQALVTGKGPLENLADHLADPVN 252
>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor| (LHCII type I CAB-25) (LHCP) Length = 266 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor| (LHCII type I CAB-16) (LHCP) Length = 266 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 266 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type I CAB-13) (LHCP) Length = 266 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 222 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 252
>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor| (LHCII type I CAB-3C) (LHCP) Length = 267 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor| (LHCII type I CAB-50) (LHCP) Length = 267 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor| (LHCII type I CAB-91R) (LHCP) Length = 267 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor| (LHCII type I CAB-40) (LHCP) Length = 267 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor| (LHCII type I CAB-22R) (LHCP) Length = 267 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor| (LHCII type I CAB-C) (LHCP) Length = 267 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 253
>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast| precursor (LHCII type I CAB-AB80) (LHCP) Length = 269 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 225 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 255
>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) (Fragment) Length = 255 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 211 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 241
>CB22_CUCSA (P08222) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 206 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 162 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 192
>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor| (LHCII type I CAB-1C) (LHCP) (Fragments) Length = 265 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor| (LHCII type I CAB-1B) (LHCP) Length = 265 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type I CAB-1A) (LHCP) (Fragments) Length = 265 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor| (LHCII type I CAB-M9) (LHCP) Length = 265 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor| (LHCII type I CAB-21) (LHCP) Length = 265 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 265 Score = 41.2 bits (95), Expect = 6e-04 Identities = 17/31 (54%), Positives = 23/31 (74%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M++ GF VQA TGKGPL N A H++DP++ Sbjct: 221 MLSMFGFFVQAIVTGKGPLENLADHIADPVN 251
>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 265 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 251
>CB21_RAPSA (P14584) Chlorophyll a-b binding of LHCII type 1 protein| (Chlorophyll a-b binding of LHCII type I protein) (CAB) (LHCP) (Fragment) Length = 124 Score = 41.2 bits (95), Expect = 6e-04 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+DP++ Sbjct: 80 MFSMFGFFVQAIVTGKGPLENLADHLADPVN 110
>CB26_ARATH (Q9XF89) Chlorophyll a-b binding protein CP26, chloroplast| precursor (Light-harvesting complex II protein 5) (LHCB5) (LHCIIc) Length = 280 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/29 (62%), Positives = 21/29 (72%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDP 265 M A LGF +QA TG+GP+ N A HLSDP Sbjct: 233 MFAMLGFFIQAYVTGEGPVENLAKHLSDP 261
>CB11_LYCES (P12360) Chlorophyll a-b binding protein 6A, chloroplast precursor| (LHCI type I CAB-6A) (Light-harvesting complex I 26 kDa protein) Length = 246 Score = 40.8 bits (94), Expect = 8e-04 Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 1/37 (2%) Frame = -1 Query: 351 MVAFLGFAVQAAA-TGKGPLNNWATHLSDPLHTTIFD 244 ++A +GF VQ +A G GPL N ATHL+DP H I D Sbjct: 200 LLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGD 236
>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor| (LHCII type I CAB-48) (LHCP) Length = 264 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGP+ N A HL+DP++ Sbjct: 220 MFSMFGFFVQAIVTGKGPIENLADHLTDPVN 250
>CB2B_PINSY (P15194) Chlorophyll a-b binding protein type 2 member 1B,| chloroplast precursor (Chlorophyll a-b binding protein type II 1B) (CAB) (LHCP) Length = 274 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGP+ N A HL+DP++ Sbjct: 230 MFSMFGFFVQAIVTGKGPIENLADHLADPVN 260
>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor| (LHCII type I CAB-1) (LHCP) Length = 262 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A H++DP++ Sbjct: 218 MFSMFGFFVQAIVTGKGPLENLADHIADPVN 248
>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor| (LHCII type I CAB-3B) (LHCP) (Fragments) Length = 267 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A H++DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor| (LHCII type I CAB-3A) (LHCP) (Fragments) Length = 267 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A H++DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLENLADHIADPVN 253
>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor| (LHCII type I CAB-2) (CAB-140) (LHCP) Length = 267 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGP+ N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast| precursor (LHCII type I CAB-165/180) Length = 267 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGP+ N A HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPIENLADHLADPVN 253
>CB2A_PYRPY (P24006) Chlorophyll a-b binding protein 1A, chloroplast precursor| (LHCII type II CAB-1A) (LHCP) Length = 278 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGP+ N A HL+DP++ Sbjct: 234 MFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
>CB2A_PINSY (P15193) Chlorophyll a-b binding protein type 2 member 1A,| chloroplast precursor (Chlorophyll a-b binding protein type II 1A) (CAB) (LHCP) Length = 278 Score = 40.4 bits (93), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGP+ N A HL+DP++ Sbjct: 234 MFSMFGFFVQAIVTGKGPIENLADHLADPVN 264
>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCII type I CAB-7) (LHCP) Length = 267 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL+N HL+DP++ Sbjct: 223 MFSMFGFFVQAIVTGKGPLDNLVDHLADPVN 253
>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor| (LHCII type I CAB-22L) (LHCP) Length = 267 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF +QA TGKGPL N A HL DP++ Sbjct: 223 MFSMFGFFIQAIVTGKGPLENLADHLVDPVN 253
>CB2_DUNSA (P20865) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 273 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIF 247 M A LGF VQA TGKGP+ N HL++P F Sbjct: 230 MFACLGFFVQAIVTGKGPIENLTDHLANPAENNAF 264
>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) (Fragment) Length = 245 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/31 (54%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL++P++ Sbjct: 201 MFSMFGFFVQAIVTGKGPLENLADHLAEPVN 231
>CB21_LEMGI (P12328) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 264 Score = 39.3 bits (90), Expect = 0.002 Identities = 16/30 (53%), Positives = 21/30 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N A H++DP+ Sbjct: 220 MFSMFGFFVQAIVTGKGPIENLADHIADPV 249
>CB21_EUGGR (P12327) Chlorophyll a-b binding protein of LHCII type 1| (Chlorophyll a-b binding protein of LHCII type I) (CAB) (LHCP) (Fragment) Length = 127 Score = 39.3 bits (90), Expect = 0.002 Identities = 16/29 (55%), Positives = 18/29 (62%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDP 265 M LGF QA TG+GP+ NW HL DP Sbjct: 78 MSGMLGFYAQAIVTGEGPVENWLYHLQDP 106
>CB21_PEA (P04159) Chlorophyll a-b binding protein AB96 (LHCII type I| CAB-AB96) (LHCP) (Major 15) (Fragment) Length = 228 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF V A TGKGPL N A HL+DP++ Sbjct: 184 MFSMFGFFVPAIVTGKGPLENLADHLADPVN 214
>CB2_CHLMO (P22686) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 256 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDP 265 M + GF VQA TGKGP+ N A HL+DP Sbjct: 212 MFSCFGFFVQAIVTGKGPIQNLADHLADP 240
>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 266 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/31 (51%), Positives = 22/31 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL + A H++DP++ Sbjct: 222 MFSMFGFFVQAIVTGKGPLEDLADHIADPVN 252
>CB12_PETHY (P13869) Chlorophyll a-b binding protein, chloroplast precursor| (LHCI type II CAB) Length = 270 Score = 38.5 bits (88), Expect = 0.004 Identities = 18/38 (47%), Positives = 23/38 (60%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 238 M+A +G Q TG GP++N HL+DP H TIF F Sbjct: 230 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
>CB12_LYCES (P10708) Chlorophyll a-b binding protein 7, chloroplast precursor| (LHCI type II CAB-7) Length = 270 Score = 38.5 bits (88), Expect = 0.004 Identities = 18/38 (47%), Positives = 23/38 (60%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDTF 238 M+A +G Q TG GP++N HL+DP H TIF F Sbjct: 230 MLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAF 267
>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor| (LHCII type I CAB-3) (LHCP) Length = 263 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLH 259 M + GF VQA TGKGPL N A HL+ P++ Sbjct: 219 MFSMFGFFVQAIVTGKGPLENLADHLAGPVN 249
>CB2_PHYPA (P20866) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 269 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/30 (56%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGPL N HL+DP+ Sbjct: 224 MFSMFGFFVQAIVTGKGPLENLNDHLADPV 253
>CB23_POLMU (P15195) Chlorophyll a-b binding protein type 1 member F3,| chloroplast precursor (DE Chlorophyll a-b binding protein type I F3) (CAB-F3) (LHCP) Length = 265 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDP 265 M + GF VQA TGKGP+ N + HL+DP Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLSDHLADP 249
>CB2_DUNTE (P27517) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDP 265 M + LGF VQA TGKGP+ N HL+DP Sbjct: 209 MFSCLGFFVQAIVTGKGPVQNLTDHLADP 237
>CB24_LYCES (P14278) Chlorophyll a-b binding protein 4, chloroplast precursor| (LHCII type I CAB-4) (LHCP) Length = 265 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N + H++DP+ Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLSDHINDPV 250
>CB23_HORVU (P27523) Chlorophyll a-b binding protein of LHCII type III,| chloroplast precursor (CAB) Length = 268 Score = 38.1 bits (87), Expect = 0.005 Identities = 17/30 (56%), Positives = 19/30 (63%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGPL N HL DP+ Sbjct: 224 MFSMFGFFVQAIVTGKGPLENLFDHLDDPV 253
>CB25_LYCES (P14279) Chlorophyll a-b binding protein 5, chloroplast precursor| (LHCII type I CAB-5) (LHCP) (Fragment) Length = 237 Score = 38.1 bits (87), Expect = 0.005 Identities = 15/30 (50%), Positives = 21/30 (70%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N + H++DP+ Sbjct: 193 MFSMFGFFVQAIVTGKGPIENLSDHIADPV 222
>CB21_GOSHI (P27518) Chlorophyll a-b binding protein 151, chloroplast precursor| (LHCII type II CAB-151) (LHCP) Length = 265 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N HL+DP+ Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLFDHLADPV 250
>CB22_PINSY (P15192) Chlorophyll a-b binding protein type 2 member 2| (Chlorophyll a-b binding protein type II 2) (CAB) (LHCP) (Fragment) Length = 150 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N HL+DP+ Sbjct: 106 MFSMFGFFVQAIVTGKGPIENLYDHLADPV 135
>CB21_PINTH (P10049) Chlorophyll a-b binding protein type I, chloroplast| precursor (CAB) (LHCP) Length = 266 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/30 (53%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N HL+DP+ Sbjct: 222 MFSMFGFFVQAIVTGKGPIENLYDHLADPV 251
>CB13_LYCES (P27522) Chlorophyll a-b binding protein 8, chloroplast precursor| (LHCI type III CAB-8) Length = 273 Score = 37.7 bits (86), Expect = 0.007 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 250 M+A LG+ +QA TG GP N HL+DP++ + Sbjct: 233 MLAILGYFIQALVTGVGPYQNLLDHLADPVNNNV 266
>CB23_ORYSA (P27519) Chlorophyll a-b binding protein, chloroplast precursor| (LHCII type I CAB) (LHCP) Length = 263 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N H++DP+ Sbjct: 219 MFSMFGFFVQAIVTGKGPIENLFDHVADPV 248
>CB26_PETSP (P12062) Chlorophyll a-b binding protein 37, chloroplast precursor| (LHCII type I CAB-37) (LHCP) Length = 265 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N H++DP+ Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLYDHVADPV 250
>CB23_TOBAC (P27494) Chlorophyll a-b binding protein 36, chloroplast precursor| (LHCII type I CAB-36) (LHCP) Length = 265 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N H++DP+ Sbjct: 221 MFSMFGFFVQAIVTGKGPIENLFDHVADPV 250
>CB23_PEA (P27520) Chlorophyll a-b binding protein 215, chloroplast precursor| (LHCII type II CAB-215) (LHCP) Length = 265 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGP+ N H++DP+ Sbjct: 221 MFSMFGFFVQAIVTGKGPIQNLYDHVADPV 250
>CB23_LYCES (P27489) Chlorophyll a-b binding protein 13, chloroplast precursor| (LHCII type III CAB-13) Length = 265 Score = 36.6 bits (83), Expect = 0.016 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPL 262 M + GF VQA TGKGPL N HL +P+ Sbjct: 221 MFSMFGFFVQAIVTGKGPLENLLDHLDNPV 250
>LH18_EUGGR (P08976) Light-harvesting complex I LH38 proteins precursor| [Contains: LH38 protein 1; LH38 protein 2; LH38 protein 3] (Fragment) Length = 530 Score = 34.7 bits (78), Expect = 0.060 Identities = 17/37 (45%), Positives = 19/37 (51%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDT 241 + A LGF VQ G PL N A HL PL I D+ Sbjct: 134 LTALLGFEVQRHVVGGSPLANLAEHLQQPLQRNIADS 170 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTI 250 + A G Q ATG+ PL N + HL++P+ I Sbjct: 322 LTAVAGLTAQYLATGESPLANLSAHLANPIGANI 355
>CB4C_ARATH (Q9S7W1) Chlorophyll a-b binding protein CP29.3, chloroplast| precursor (LHCII protein 4.3) (LHCB4.3) Length = 276 Score = 33.9 bits (76), Expect = 0.10 Identities = 17/24 (70%), Positives = 20/24 (83%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWAT 280 MVAFL FA+QAA TGKGP++ AT Sbjct: 250 MVAFLIFALQAAFTGKGPVSFLAT 273
>CB2_CHLRE (P14273) Chlorophyll a-b binding protein of LHCII type I,| chloroplast precursor (CAB) (LHCP) Length = 253 Score = 33.9 bits (76), Expect = 0.10 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -1 Query: 345 AFLGFAVQAAATGKGPLNNWATHLSDPLHTTIF 247 + GF VQA TGKGP+ N HL++P F Sbjct: 211 SMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAF 243
>LH15_EUGGR (P08975) Light-harvesting complex I LH35 proteins precursor| [Contains: LH35 protein 1; LH35 protein 2] (Fragment) Length = 331 Score = 32.0 bits (71), Expect = 0.39 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWATHLSDPLHTTIFDT 241 M LG Q ATG+ PL N A H ++P+ I T Sbjct: 293 MTGLLGLTFQYLATGESPLANLAAHFANPVGANITTT 329
>SGS3_DROER (P13730) Salivary glue protein Sgs-3 precursor| Length = 328 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Frame = -2 Query: 293 TTGPPTSATRCTPPSST----PSAPLKWSVVEQFLSAQLQNGRTRVRVT 159 TT P + TRC PP++T P+ P + + + +A+ RT VR T Sbjct: 50 TTCRPPTTTRCPPPTTTRCPPPTRPAECTATTKRPTARPTTRRTTVRAT 98
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 1.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAPL 228 T PPT+ T PP++TPS P+ Sbjct: 1483 TPSPPTTTTTTPPPTTTPSPPM 1504 Score = 30.0 bits (66), Expect = 1.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAPL 228 T PPT+ T PP++TPS P+ Sbjct: 1421 TPSPPTTTTTTPPPTTTPSPPI 1442 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAP 231 T PPT+ T PP++TPS P Sbjct: 1601 TPSPPTTTTTTPPPTTTPSPP 1621 Score = 29.3 bits (64), Expect = 2.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAP 231 T PPT+ T PP++TPS P Sbjct: 1522 TPSPPTTTTTTPPPTTTPSPP 1542 Score = 28.5 bits (62), Expect = 4.3 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAPL 228 T PP + T PP++TPS+P+ Sbjct: 1664 TPSPPITTTTTPPPTTTPSSPI 1685 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAP 231 T PPT T PP++TPS P Sbjct: 1585 TPSPPTITTTTPPPTTTPSPP 1605 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAP 231 T PP S T PP++TPS P Sbjct: 1453 TPSPPISTTTTPPPTTTPSPP 1473
>LCAT_CHICK (P53760) Phosphatidylcholine-sterol acyltransferase precursor (EC| 2.3.1.43) (Lecithin-cholesterol acyltransferase) (Phospholipid-cholesterol acyltransferase) (Fragment) Length = 413 Score = 29.3 bits (64), Expect = 2.5 Identities = 17/48 (35%), Positives = 22/48 (45%) Frame = -2 Query: 284 PPTSATRCTPPSSTPSAPLKWSVVEQFLSAQLQNGRTRVRVTNVLWFC 141 PPT+ P +STP W +V FL QL+ + V N W C Sbjct: 31 PPTTTPEAPPTNSTP----PWCLVPGFLGNQLEAKLDKPDVVN--WMC 72
>MURE_WOLSU (Q7M8F9) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 434 Score = 28.5 bits (62), Expect = 4.3 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +2 Query: 17 H*VTIGSYFTNHQVPAALLCDRTSIIIN-KGSLRYPLIHHSSYKTKARSLHG 169 H + + F + P + D + N + +L Y + H SSY KA SLHG Sbjct: 173 HYIQTKNSFFDDSTPKLINKDESKAKFNLQNALSYGIEHPSSYHVKAYSLHG 224
>CB29_CHLRE (Q93WD2) Chlorophyll a-b binding protein CP29| Length = 279 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/23 (52%), Positives = 17/23 (73%) Frame = -1 Query: 351 MVAFLGFAVQAAATGKGPLNNWA 283 MV+F G+ VQA +TG+G L + A Sbjct: 245 MVSFFGYGVQALSTGEGALGSLA 267
>TSN32_HUMAN (Q96QS1) Tetraspanin-32 (Protein Phemx)| Length = 320 Score = 28.1 bits (61), Expect = 5.6 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 260 CSGSLRWVAQLLSGPLPVAAACTA 331 CSGSLRW+ + + PLP++ A Sbjct: 275 CSGSLRWLQESDAAPLPLSCHLAA 298
>NIFH_CLOCB (Q59270) Nitrogenase iron protein (EC 1.18.6.1) (Nitrogenase| component II) (Nitrogenase Fe protein) (Nitrogenase reductase) Length = 271 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = +2 Query: 50 HQVPAALLCDRTSIIINKGSLRYPLIHHSSYKTKARSLHG 169 H VPA + C R I + S P+ Y+T AR + G Sbjct: 206 HFVPATMRCRRRKSIKRQLSTFRPMTQADEYRTLARKIDG 245
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = -2 Query: 290 TGPPTSATRCTPPSSTPSA-PLKWSVVEQFLSAQLQNG 180 + P T AT TP + TPS+ P K ++ E+ + +L G Sbjct: 925 SSPATPATPATPATPTPSSGPKKMTMAEKLRAKRLAKG 962
>YS89_CAEEL (Q09624) Hypothetical protein ZK945.9| Length = 3178 Score = 27.3 bits (59), Expect = 9.5 Identities = 19/56 (33%), Positives = 23/56 (41%) Frame = -2 Query: 293 TTGPPTSATRCTPPSSTPSAPLKWSVVEQFLSAQLQNGRTRVRVTNVLWFCMTSDG 126 TT P TS T + SSTPS+ SV S Q + T +SDG Sbjct: 493 TTAPSTSTTGPSSSSSTPSSTASSSVSSTASSTQSSTSTQQSSTTTKSETTTSSDG 548 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,121,342 Number of Sequences: 219361 Number of extensions: 697842 Number of successful extensions: 2330 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 2216 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2325 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
