ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet66d01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191576.2| Oryza sativa (japonica cultivar-group), mRNA 167 4e-38
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
3dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic D... 167 4e-38
4dbj|AK067273.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
5gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 109 8e-21
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 109 8e-21
7dbj|AK062702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
8gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 44 0.39
9gb|AC153494.25| Mus musculus 10 BAC RP23-345J24 (Roswell Park Ca... 42 1.5
10gb|DQ213082.1| Taeniopygia guttata clone 0058P0009D02 RNA proces... 42 1.5
11ref|XM_422376.1| PREDICTED: Gallus gallus similar to RNA process... 42 1.5
12ref|XM_800044.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.5
13ref|XM_808186.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 1.5
14emb|AJ315730.1|SNO315730 Streptomyces noursei npsB gene for nour... 42 1.5
15gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 42 1.5
16ref|XM_530633.1| PREDICTED: Pan troglodytes LOC460639 (LOC460639... 40 6.0
17gb|AC161193.3| Mus musculus chromosome 8, clone RP23-308L22, com... 40 6.0
18gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, compl... 40 6.0
19gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 6.0
20gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 6.0
21ref|XM_652585.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 6.0
22ref|XM_753356.1| Ustilago maydis 521 hypothetical protein (UM023... 40 6.0
23ref|XM_547500.2| PREDICTED: Canis familiaris similar to CG14535-... 40 6.0
24ref|XM_858330.1| PREDICTED: Canis familiaris similar to CG14535-... 40 6.0
25gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.0
26emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.0
27emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
28gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Can... 40 6.0
29dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 40 6.0
30gb|AF239413.1|AF239413 Eulophia guineensis 18S ribosomal RNA gen... 40 6.0
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
32dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
33dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
35gb|AC084455.1|AC084455 Caenorhabditis briggsae cosmid CB027N19, ... 40 6.0
36gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, c... 40 6.0
37gb|AC087651.19| Homo sapiens chromosome 17, clone RP11-309N17, c... 40 6.0
38dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
39dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
40gb|AC118222.8| Mus musculus chromosome 13, clone RP23-277M5, com... 40 6.0
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
42emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB1... 40 6.0
43gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 40 6.0 
>ref|NM_191576.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 823

 Score =  167 bits (84), Expect = 4e-38
 Identities = 154/177 (87%), Gaps = 3/177 (1%)
 Strand = Plus / Minus

                                                                       
Query: 248 ggcgaggcgcgggcagcggttgaagccgtaccagacgttgttggggagcgggtcgccgta 307
           ||||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 600 ggcgaggcgggggcagcggttgaagccgtaccagacggcgttggggagggggtcgccgta 541

                                                                       
Query: 308 ncggaaggtggagggcgcgctgggggcggtcggctcgtacaccctgacccactcgggcgt 367
              |||||||||||| |   ||  || ||| |||||||| |||||||||||||  |||||
Sbjct: 540 gtagaaggtggaggggg---tgtcggaggtgggctcgtagaccctgacccactgcggcgt 484

                                                                    
Query: 368 ccacccggtgcggccggcgcggcggaggtagaggtagcagacgccgtacccgcaggg 424
           ||| |||  |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 483 ccagccgtcgcggccggagcggcggaggtagaggtagcagacgccgtagccgcaggg 427
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  167 bits (84), Expect = 4e-38
 Identities = 154/177 (87%), Gaps = 3/177 (1%)
 Strand = Plus / Minus

                                                                           
Query: 248     ggcgaggcgcgggcagcggttgaagccgtaccagacgttgttggggagcgggtcgccgta 307
               ||||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 3735559 ggcgaggcgggggcagcggttgaagccgtaccagacggcgttggggagggggtcgccgta 3735500

                                                                           
Query: 308     ncggaaggtggagggcgcgctgggggcggtcggctcgtacaccctgacccactcgggcgt 367
                  |||||||||||| |   ||  || ||| |||||||| |||||||||||||  |||||
Sbjct: 3735499 gtagaaggtggaggggg---tgtcggaggtgggctcgtagaccctgacccactgcggcgt 3735443

                                                                        
Query: 368     ccacccggtgcggccggcgcggcggaggtagaggtagcagacgccgtacccgcaggg 424
               ||| |||  |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 3735442 ccagccgtcgcggccggagcggcggaggtagaggtagcagacgccgtagccgcaggg 3735386
to top
>dbj|AP003215.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
            clone:OSJNBa0089K24
          Length = 154137

 Score =  167 bits (84), Expect = 4e-38
 Identities = 154/177 (87%), Gaps = 3/177 (1%)
 Strand = Plus / Minus

                                                                        
Query: 248  ggcgaggcgcgggcagcggttgaagccgtaccagacgttgttggggagcgggtcgccgta 307
            ||||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 9101 ggcgaggcgggggcagcggttgaagccgtaccagacggcgttggggagggggtcgccgta 9042

                                                                        
Query: 308  ncggaaggtggagggcgcgctgggggcggtcggctcgtacaccctgacccactcgggcgt 367
               |||||||||||| |   ||  || ||| |||||||| |||||||||||||  |||||
Sbjct: 9041 gtagaaggtggaggggg---tgtcggaggtgggctcgtagaccctgacccactgcggcgt 8985

                                                                     
Query: 368  ccacccggtgcggccggcgcggcggaggtagaggtagcagacgccgtacccgcaggg 424
            ||| |||  |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 8984 ccagccgtcgcggccggagcggcggaggtagaggtagcagacgccgtagccgcaggg 8928
to top
>dbj|AK067273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J12, full
           insert sequence
          Length = 823

 Score =  167 bits (84), Expect = 4e-38
 Identities = 154/177 (87%), Gaps = 3/177 (1%)
 Strand = Plus / Minus

                                                                       
Query: 248 ggcgaggcgcgggcagcggttgaagccgtaccagacgttgttggggagcgggtcgccgta 307
           ||||||||| |||||||||||||||||||||||||||  ||||||||| |||||||||||
Sbjct: 600 ggcgaggcgggggcagcggttgaagccgtaccagacggcgttggggagggggtcgccgta 541

                                                                       
Query: 308 ncggaaggtggagggcgcgctgggggcggtcggctcgtacaccctgacccactcgggcgt 367
              |||||||||||| |   ||  || ||| |||||||| |||||||||||||  |||||
Sbjct: 540 gtagaaggtggaggggg---tgtcggaggtgggctcgtagaccctgacccactgcggcgt 484

                                                                    
Query: 368 ccacccggtgcggccggcgcggcggaggtagaggtagcagacgccgtacccgcaggg 424
           ||| |||  |||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 483 ccagccgtcgcggccggagcggcggaggtagaggtagcagacgccgtagccgcaggg 427
to top
>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                         
Query: 354   acccactcgggcgtccacccggtgcggccggcgcggcggaggtagaggtagcagacgccg 413
             |||||||| |||| |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 90570 acccactccggcgcccacccgtcgcggccggcgcggcggaggtagaggtagcagacgccg 90511

                                
Query: 414   tacccgcagggcccgccga 432
             ||||||||  |||||||||
Sbjct: 90510 tacccgcactgcccgccga 90492
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                           
Query: 354     acccactcgggcgtccacccggtgcggccggcgcggcggaggtagaggtagcagacgccg 413
               |||||||| |||| |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 4204091 acccactccggcgcccacccgtcgcggccggcgcggcggaggtagaggtagcagacgccg 4204032

                                  
Query: 414     tacccgcagggcccgccga 432
               ||||||||  |||||||||
Sbjct: 4204031 tacccgcactgcccgccga 4204013
to top
>dbj|AK062702.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B03, full
           insert sequence
          Length = 715

 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                       
Query: 354 acccactcgggcgtccacccggtgcggccggcgcggcggaggtagaggtagcagacgccg 413
           |||||||| |||| |||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 414 acccactccggcgcccacccgtcgcggccggcgcggcggaggtagaggtagcagacgccg 355

                              
Query: 414 tacccgcagggcccgccga 432
           ||||||||  |||||||||
Sbjct: 354 tacccgcactgcccgccga 336
to top
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 245     cgaggcgaggcgcgggcagcgg 266
               ||||||||||||||||||||||
Sbjct: 1899334 cgaggcgaggcgcgggcagcgg 1899313
to top
>gb|AC153494.25| Mus musculus 10 BAC RP23-345J24 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 231991

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 221   agcagcagcagaggaaggaga 241
             |||||||||||||||||||||
Sbjct: 49290 agcagcagcagaggaaggaga 49270
to top
>gb|DQ213082.1| Taeniopygia guttata clone 0058P0009D02 RNA processing factor 1-like
           mRNA, complete sequence
          Length = 1384

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 221 agcagcagcagaggaaggaga 241
           |||||||||||||||||||||
Sbjct: 170 agcagcagcagaggaaggaga 190
to top
>ref|XM_422376.1| PREDICTED: Gallus gallus similar to RNA processing factor 1
           (LOC424539), mRNA
          Length = 2081

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 221 agcagcagcagaggaaggaga 241
           |||||||||||||||||||||
Sbjct: 863 agcagcagcagaggaaggaga 883
to top
>ref|XM_800044.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510753.20) partial mRNA
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 365 cgtccacccggtgcggccggc 385
           |||||||||||||||||||||
Sbjct: 96  cgtccacccggtgcggccggc 116
to top
>ref|XM_808186.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510655.20) partial mRNA
          Length = 1383

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 365 cgtccacccggtgcggccggc 385
           |||||||||||||||||||||
Sbjct: 96  cgtccacccggtgcggccggc 116
to top
>emb|AJ315730.1|SNO315730 Streptomyces noursei npsB gene for nourseothricin peptidyl carrier
            protein
          Length = 2100

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 369  cacccggtgcggccggcgcggcgga 393
            |||||||||||||||| ||||||||
Sbjct: 2026 cacccggtgcggccggggcggcgga 2050
to top
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 371    cccggtgcggccggcgcggcg 391
              |||||||||||||||||||||
Sbjct: 824916 cccggtgcggccggcgcggcg 824936
to top
>ref|XM_530633.1| PREDICTED: Pan troglodytes LOC460639 (LOC460639), mRNA
          Length = 1054

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 gaggaaggagacgacgaggc 250
           ||||||||||||||||||||
Sbjct: 882 gaggaaggagacgacgaggc 901
to top
>gb|AC161193.3| Mus musculus chromosome 8, clone RP23-308L22, complete sequence
          Length = 177860

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gcagtagcagcagcagagga 235
             ||||||||||||||||||||
Sbjct: 35648 gcagtagcagcagcagagga 35629
to top
>gb|AC112964.8| Mus musculus chromosome 8, clone RP24-82M4, complete sequence
          Length = 193076

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   gcagtagcagcagcagagga 235
             ||||||||||||||||||||
Sbjct: 87611 gcagtagcagcagcagagga 87592
to top
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 377     gcggccggcgcggcggaggt 396
               ||||||||||||||||||||
Sbjct: 1878272 gcggccggcgcggcggaggt 1878291
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 377     gcggccggcgcggcggaggt 396
               ||||||||||||||||||||
Sbjct: 1587271 gcggccggcgcggcggaggt 1587252
to top
>ref|XM_652585.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0073.2), mRNA
          Length = 1764

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 126  caactatggcaaaacgccgtgctcgatc 153
            |||||| ||||||||||||| |||||||
Sbjct: 1328 caactagggcaaaacgccgtactcgatc 1355
to top
>ref|XM_753356.1| Ustilago maydis 521 hypothetical protein (UM02302.1) partial mRNA
          Length = 2895

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 221  agcagcagcagaggaaggag 240
            ||||||||||||||||||||
Sbjct: 1575 agcagcagcagaggaaggag 1556
to top
>ref|XM_547500.2| PREDICTED: Canis familiaris similar to CG14535-PA, transcript variant
            1 (LOC490379), mRNA
          Length = 5264

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  cggtgcggccggcgcggcgg 392
            ||||||||||||||||||||
Sbjct: 4522 cggtgcggccggcgcggcgg 4503
to top
>ref|XM_858330.1| PREDICTED: Canis familiaris similar to CG14535-PA, transcript variant
            2 (LOC490379), mRNA
          Length = 5276

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 373  cggtgcggccggcgcggcgg 392
            ||||||||||||||||||||
Sbjct: 4534 cggtgcggccggcgcggcgg 4515
to top
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 372     ccggtgcggccggcgcggcg 391
               ||||||||||||||||||||
Sbjct: 2778282 ccggtgcggccggcgcggcg 2778301
to top
>emb|BX572595.1| Rhodopseudomonas palustris CGA009 complete genome; segment 3/16
          Length = 349260

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  ccggtgcggccggcgcggcg 391
            ||||||||||||||||||||
Sbjct: 5657 ccggtgcggccggcgcggcg 5676
to top
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
             complete sequence
          Length = 129037

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 382   cggcgcggcggaggtagagg 401
             ||||||||||||||||||||
Sbjct: 57231 cggcgcggcggaggtagagg 57250
to top
>gb|AC025571.20| Homo sapiens 3 BAC RP11-515C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 159902

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gaggaaggagacgacgaggc 250
             ||||||||||||||||||||
Sbjct: 95282 gaggaaggagacgacgaggc 95263
to top
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 252     aggcgcgggcagcggttgaa 271
               ||||||||||||||||||||
Sbjct: 2471253 aggcgcgggcagcggttgaa 2471272
to top
>gb|AF239413.1|AF239413 Eulophia guineensis 18S ribosomal RNA gene, partial sequence;
           internal transcribed spacer 1, 5.8S ribosomal RNA gene
           and internal transcribed spacer 2, complete sequence;
           and 26S ribosomal RNA gene, partial sequence
          Length = 872

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 376 tgcggccggcgcggcggagg 395
           ||||||||||||||||||||
Sbjct: 239 tgcggccggcgcggcggagg 258
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 382      cggcgcggcggaggtagagg 401
                ||||||||||||||||||||
Sbjct: 30581523 cggcgcggcggaggtagagg 30581542
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 231      gaggaaggagacgacgaggcgagg 254
                ||||||| ||||||||||||||||
Sbjct: 21453732 gaggaagaagacgacgaggcgagg 21453755



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 231      gaggaaggagacgacgaggcgagg 254
                ||||||| ||||||||||||||||
Sbjct: 21443070 gaggaagaagacgacgaggcgagg 21443093
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 218     agtagcagcagcagaggaaggaga 241
               ||||||||||||| ||||||||||
Sbjct: 9698625 agtagcagcagcaaaggaaggaga 9698602
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 233     ggaaggagacgacgaggcgaggcg 256
               ||||||||||| ||||||||||||
Sbjct: 4344835 ggaaggagacgtcgaggcgaggcg 4344812
to top
>gb|AC084455.1|AC084455 Caenorhabditis briggsae cosmid CB027N19, complete sequence
          Length = 58179

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    agaaattaatccacacgtag 112
             ||||||||||||||||||||
Sbjct: 17609 agaaattaatccacacgtag 17628
to top
>gb|AC068874.21| Homo sapiens chromosome 17, clone RP11-399J11, complete sequence
          Length = 174914

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ctgtgcagtagcagcagcag 231
             ||||||||||||||||||||
Sbjct: 47994 ctgtgcagtagcagcagcag 47975
to top
>gb|AC087651.19| Homo sapiens chromosome 17, clone RP11-309N17, complete sequence
          Length = 197148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ctgtgcagtagcagcagcag 231
             ||||||||||||||||||||
Sbjct: 32127 ctgtgcagtagcagcagcag 32146
to top
>dbj|AP003800.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1014_E09
          Length = 184624

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 233    ggaaggagacgacgaggcgaggcg 256
              ||||||||||| ||||||||||||
Sbjct: 165889 ggaaggagacgtcgaggcgaggcg 165866
to top
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0706E03
          Length = 188028

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    agtagcagcagcagaggaaggaga 241
              ||||||||||||| ||||||||||
Sbjct: 138722 agtagcagcagcaaaggaaggaga 138699
to top
>gb|AC118222.8| Mus musculus chromosome 13, clone RP23-277M5, complete sequence
          Length = 175089

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 212   ctgtgcagtagcagcagcag 231
             ||||||||||||||||||||
Sbjct: 82312 ctgtgcagtagcagcagcag 82293
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 231      gaggaaggagacgacgaggcgagg 254
                ||||||| ||||||||||||||||
Sbjct: 21382053 gaggaagaagacgacgaggcgagg 21382076



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 231      gaggaaggagacgacgaggcgagg 254
                ||||||| ||||||||||||||||
Sbjct: 21371391 gaggaagaagacgacgaggcgagg 21371414
to top
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 231     gaggaaggagacgacgaggc 250
               ||||||||||||||||||||
Sbjct: 1198270 gaggaaggagacgacgaggc 1198289
to top
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     aggcgcgggcagcggttgaa 271
               ||||||||||||||||||||
Sbjct: 1845798 aggcgcgggcagcggttgaa 1845779


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,227,006
Number of Sequences: 3902068
Number of extensions: 3227006
Number of successful extensions: 76444
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 75600
Number of HSP's gapped (non-prelim): 844
length of query: 448
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 426
effective length of database: 17,147,199,772
effective search space: 7304707102872
effective search space used: 7304707102872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top