ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet66c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC105150.2| Homo sapiens chromosome 8, clone RP11-328K2, comp... 42 0.54
2emb|AL021046.4|SPAC3G9 S.pombe chromosome I cosmid c3G9 40 2.1
3gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome 40 2.1
4ref|NM_120585.2| Arabidopsis thaliana unknown protein AT5G05030 ... 38 8.4
5ref|XM_523835.1| PREDICTED: Pan troglodytes LOC468446 (LOC468446... 38 8.4
6ref|XM_811035.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 8.4
7ref|XM_812147.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 8.4
8gb|AC146790.16| Medicago truncatula clone mth2-123b21, complete ... 38 8.4
9emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4,... 38 8.4
10gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 38 8.4
11gb|AC040977.10| Homo sapiens chromosome 17, clone RP11-589P10, c... 38 8.4
12dbj|AK074674.1| Homo sapiens cDNA FLJ90193 fis, clone MAMMA10012... 38 8.4
13dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome 38 8.4
14ref|NM_153357.1| Homo sapiens solute carrier family 16 (monocarb... 38 8.4
15dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.4
16gb|BC093886.1| Homo sapiens solute carrier family 16 (monocarbox... 38 8.4
17gb|BC093860.1| Homo sapiens solute carrier family 16 (monocarbox... 38 8.4
18gb|BT005588.1| Arabidopsis thaliana clone U50179 unknown protein... 38 8.4
19gb|BT004324.1| Arabidopsis thaliana clone RAFL15-27-N21 (R50179)... 38 8.4
20emb|BX276083.4| Zebrafish DNA sequence from clone CH211-165N1 in... 38 8.4
21dbj|AB005245.2| Arabidopsis thaliana genomic DNA, chromosome 5, ... 38 8.4
22emb|BX510336.6| Zebrafish DNA sequence from clone CH211-198D13 i... 38 8.4
23emb|AL732338.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 38 8.4
24emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 38 8.4

>gb|AC105150.2| Homo sapiens chromosome 8, clone RP11-328K2, complete sequence
          Length = 201000

 Score = 42.1 bits (21), Expect = 0.54
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 57     aagatactacgttgtttcctctcca 81
              |||||||||| ||||||||||||||
Sbjct: 145781 aagatactaccttgtttcctctcca 145757



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>emb|AL021046.4|SPAC3G9 S.pombe chromosome I cosmid c3G9
          Length = 38096

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    atactacgttgtttcctctccatc 83
             |||||||||||||| |||||||||
Sbjct: 13853 atactacgttgtttactctccatc 13876



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>gb|CP000077.1| Sulfolobus acidocaldarius DSM 639, complete genome
          Length = 2225959

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     ttattgatgatagttaagat 125
               ||||||||||||||||||||
Sbjct: 2000584 ttattgatgatagttaagat 2000603



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>ref|NM_120585.2| Arabidopsis thaliana unknown protein AT5G05030 mRNA, complete cds
          Length = 1213

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 101  gaaacttattgatgatagt 119
            |||||||||||||||||||
Sbjct: 1048 gaaacttattgatgatagt 1066



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>ref|XM_523835.1| PREDICTED: Pan troglodytes LOC468446 (LOC468446), mRNA
          Length = 1416

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 150  gatcctctccggcagcttc 168
            |||||||||||||||||||
Sbjct: 1245 gatcctctccggcagcttc 1263



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>ref|XM_811035.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053506999.20) partial mRNA
          Length = 2271

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 65   acgttgtttcctctccatcggct 87
            ||||||||||||||||| |||||
Sbjct: 1178 acgttgtttcctctccaccggct 1200



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>ref|XM_812147.1| Trypanosoma cruzi strain CL Brener hypothetical protein
            (Tc00.1047053510759.180) partial mRNA
          Length = 2274

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 65   acgttgtttcctctccatcggct 87
            ||||||||||||||||| |||||
Sbjct: 1181 acgttgtttcctctccaccggct 1203



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>gb|AC146790.16| Medicago truncatula clone mth2-123b21, complete sequence
          Length = 114449

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    ataagatgaaccgaaactt 107
             |||||||||||||||||||
Sbjct: 84555 ataagatgaaccgaaactt 84537



 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    ataagatgaaccgaaactt 107
             |||||||||||||||||||
Sbjct: 80978 ataagatgaaccgaaactt 80960



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>emb|AL606444.3|OSJN00019 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L09,
              complete sequence
          Length = 159502

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 152    tcctctccggcagcttctc 170
              |||||||||||||||||||
Sbjct: 131212 tcctctccggcagcttctc 131230



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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 147     ggggatcctctccggcagc 165
               |||||||||||||||||||
Sbjct: 2041155 ggggatcctctccggcagc 2041137



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>gb|AC040977.10| Homo sapiens chromosome 17, clone RP11-589P10, complete sequence
          Length = 174741

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 150    gatcctctccggcagcttc 168
              |||||||||||||||||||
Sbjct: 166694 gatcctctccggcagcttc 166676



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>dbj|AK074674.1| Homo sapiens cDNA FLJ90193 fis, clone MAMMA1001237, weakly similar to
            MONOCARBOXYLATE TRANSPORTER 2
          Length = 1803

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 150  gatcctctccggcagcttc 168
            |||||||||||||||||||
Sbjct: 1583 gatcctctccggcagcttc 1601



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>dbj|BA000023.2| Sulfolobus tokodaii str. 7 DNA, complete genome
          Length = 2694756

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 115    atagttaagataaggcgaa 133
              |||||||||||||||||||
Sbjct: 826440 atagttaagataaggcgaa 826422



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>ref|NM_153357.1| Homo sapiens solute carrier family 16 (monocarboxylic acid
            transporters), member 11 (SLC16A11), mRNA
          Length = 1803

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 150  gatcctctccggcagcttc 168
            |||||||||||||||||||
Sbjct: 1583 gatcctctccggcagcttc 1601



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 152      tcctctccggcagcttctc 170
                |||||||||||||||||||
Sbjct: 32361629 tcctctccggcagcttctc 32361647



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>gb|BC093886.1| Homo sapiens solute carrier family 16 (monocarboxylic acid
            transporters), member 11, mRNA (cDNA clone MGC:120921
            IMAGE:7939731), complete cds
          Length = 1464

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 150  gatcctctccggcagcttc 168
            |||||||||||||||||||
Sbjct: 1266 gatcctctccggcagcttc 1284



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>gb|BC093860.1| Homo sapiens solute carrier family 16 (monocarboxylic acid
            transporters), member 11, mRNA (cDNA clone MGC:120895
            IMAGE:7939705), complete cds
          Length = 1464

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 150  gatcctctccggcagcttc 168
            |||||||||||||||||||
Sbjct: 1266 gatcctctccggcagcttc 1284



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>gb|BT005588.1| Arabidopsis thaliana clone U50179 unknown protein (At5g05030) mRNA,
            complete cds
          Length = 1123

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 101  gaaacttattgatgatagt 119
            |||||||||||||||||||
Sbjct: 990  gaaacttattgatgatagt 1008



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>gb|BT004324.1| Arabidopsis thaliana clone RAFL15-27-N21 (R50179) unknown protein
            (At5g05030) mRNA, complete cds
          Length = 1227

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 101  gaaacttattgatgatagt 119
            |||||||||||||||||||
Sbjct: 1048 gaaacttattgatgatagt 1066



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>emb|BX276083.4| Zebrafish DNA sequence from clone CH211-165N1 in linkage group 17,
             complete sequence
          Length = 133128

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   aacttattgatgatagtta 121
             |||||||||||||||||||
Sbjct: 28376 aacttattgatgatagtta 28358



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>dbj|AB005245.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUG13
          Length = 86630

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 101   gaaacttattgatgatagt 119
             |||||||||||||||||||
Sbjct: 51570 gaaacttattgatgatagt 51552



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>emb|BX510336.6| Zebrafish DNA sequence from clone CH211-198D13 in linkage group 20,
              complete sequence
          Length = 187683

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 90     taagatgaaccgaaacttattgatgat 116
              |||||||||||||| ||| ||||||||
Sbjct: 173502 taagatgaaccgaatctttttgatgat 173476



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>emb|AL732338.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0315F07, complete
             sequence
          Length = 73187

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 152   tcctctccggcagcttctc 170
             |||||||||||||||||||
Sbjct: 68618 tcctctccggcagcttctc 68636



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>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete
             sequence
          Length = 63554

 Score = 38.2 bits (19), Expect = 8.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 152   tcctctccggcagcttctc 170
             |||||||||||||||||||
Sbjct: 23342 tcctctccggcagcttctc 23360


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 969,809
Number of Sequences: 3902068
Number of extensions: 969809
Number of successful extensions: 55404
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55307
Number of HSP's gapped (non-prelim): 97
length of query: 172
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 150
effective length of database: 17,147,199,772
effective search space: 2572079965800
effective search space used: 2572079965800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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