>ALGB_PSEAE (P23747) Alginate biosynthesis transcriptional regulatory protein|
           algB
          Length = 449

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +3

Query: 21  NTALESNEASILDYLCKPCIPD 86
           +TA+++ +A  +DYL KPC PD
Sbjct: 93  DTAVDAMQAGAVDYLVKPCSPD 114

>ALGB_PSESM (Q88AQ2) Alginate biosynthesis transcriptional regulatory protein|
           algB
          Length = 448

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 21  NTALESNEASILDYLCKPCIPD 86
           +TA+++ +A   DYL KPC PD
Sbjct: 93  DTAVDAIQAGAADYLVKPCSPD 114

>ALGB_PSEPK (Q88RJ6) Alginate biosynthesis transcriptional regulatory protein|
           algB
          Length = 448

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 21  NTALESNEASILDYLCKPCIPD 86
           +TA+++ +A   DYL KPC PD
Sbjct: 93  DTAVDAIQAGAADYLVKPCSPD 114

>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system|
           defective) (Homeobox protein NK-2)
          Length = 723

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
 Frame = +1

Query: 196 AKHEQILEHNAPSKLLGCRDYYHYEQHH-----PENNHQQA 303
           A H    EH+AP      +  +H + HH     P+ +HQQA
Sbjct: 279 ADHHSTTEHHAPPSHPQQQHPHHQQHHHPHLLLPQQHHQQA 319

>YRM5_CAEEL (Q09601) Hypothetical protein R06F6.5|
          Length = 378

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +1

Query: 133 ETWIYIPD*LHSKIKL*RNLSAKHEQILEHNAPSK 237
           +TW+ +     S++ +  NL ++H +++ H  PSK
Sbjct: 198 DTWVTVFGFQPSQVSILLNLFSRHGEVVSHQTPSK 232


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,074,062
Number of Sequences: 219361
Number of extensions: 610691
Number of successful extensions: 1199
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)