ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet66a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HEM1_SCHPO (O14092) 5-aminolevulinate synthase, mitochondrial pr... 28 5.8
2BAI3_MOUSE (Q80ZF8) Brain-specific angiogenesis inhibitor 3 prec... 28 7.6
3BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 prec... 28 7.6
4ARGC_BRUSU (P59314) N-acetyl-gamma-glutamyl-phosphate reductase ... 28 7.6
5ARGC_BRUME (Q8YGI8) N-acetyl-gamma-glutamyl-phosphate reductase ... 28 7.6
6AMY1_SACFI (P21567) Alpha-amylase precursor (EC 3.2.1.1) 27 9.9
7CDS1_CAEEL (P53439) Putative phosphatidate cytidylyltransferase ... 27 9.9

>HEM1_SCHPO (O14092) 5-aminolevulinate synthase, mitochondrial precursor (EC|
           2.3.1.37) (5-aminolevulinic acid synthase)
           (Delta-aminolevulinate synthase) (Delta-ALA synthetase)
          Length = 558

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 206 ISNSGHNKLCTALHACAETWNGRTDGS 286
           ++  GH K+  A+H C ET+ G   G+
Sbjct: 185 LNMGGHKKIREAMHQCIETYGGGAGGT 211



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>BAI3_MOUSE (Q80ZF8) Brain-specific angiogenesis inhibitor 3 precursor|
          Length = 1522

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 SNSGHNKLCTALHACAETWNGRTDGSG 289
           S  G + LCT L +C ++ NGRT+  G
Sbjct: 164 SQFGCHVLCTWLESCLKSENGRTESCG 190



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>BAI3_HUMAN (O60242) Brain-specific angiogenesis inhibitor 3 precursor|
          Length = 1522

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 209 SNSGHNKLCTALHACAETWNGRTDGSG 289
           S  G + LCT L +C ++ NGRT+  G
Sbjct: 164 SQFGCHVLCTWLESCLKSENGRTESCG 190



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>ARGC_BRUSU (P59314) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 310

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 36  LIDTSTQHTITPSIATGYTNLTRFQTE 116
           +IDTST H + P  A G+  L + Q E
Sbjct: 78  IIDTSTAHRVHPDWAYGFAELAKGQRE 104



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>ARGC_BRUME (Q8YGI8) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)|
           (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase)
           (NAGSA dehydrogenase)
          Length = 310

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 36  LIDTSTQHTITPSIATGYTNLTRFQTE 116
           +IDTST H + P  A G+  L + Q E
Sbjct: 78  IIDTSTTHRVHPDWAYGFAELAKGQRE 104



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>AMY1_SACFI (P21567) Alpha-amylase precursor (EC 3.2.1.1)|
          Length = 494

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 53  TTYNYTFHSHWIYKSYKISNGMMT 124
           T Y Y +H +W+   YKI+    T
Sbjct: 100 TAYGYAYHGYWMKNIYKINENFGT 123



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>CDS1_CAEEL (P53439) Putative phosphatidate cytidylyltransferase (EC 2.7.7.41)|
           (CDP-diglyceride synthetase) (CDP-diglyceride
           pyrophosphorylase) (CDP-diacylglycerol synthase)
           (CDP-DAG synthase) (CDP-DG synthetase)
          Length = 455

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -1

Query: 178 FRFVHLVLLQHLFYFYYYCHHSV*NLVRFVYPVAMEGVIVCCVLVS 41
           F + HL LL  +   ++   +    L+ F+ PVAM   I+CC ++S
Sbjct: 213 FAWTHLTLLLIVSQSFFIIQNIFQGLIWFLAPVAM---IICCDIMS 255


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,965,184
Number of Sequences: 219361
Number of extensions: 744391
Number of successful extensions: 1830
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1827
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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