| Clone Name | rbaet65g12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds Length = 1343 Score = 254 bits (128), Expect = 7e-65 Identities = 141/144 (97%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 3 aaccgaaccgtacgtacacattgcatttcaaatttcccccc-aagttacctggatgcgta 61 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1225 aaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcgta 1166 Query: 62 catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1165 catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 1106 Query: 122 ctgacaaaaacacactcgatcggt 145 ||||| || ||||||||||||||| Sbjct: 1105 ctgacgaagacacactcgatcggt 1082
>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence Length = 218656 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 acattacatggaagcaaacac 118 ||||||||||||||||||||| Sbjct: 152543 acattacatggaagcaaacac 152563
>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7, complete sequence Length = 150136 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 acagtacatcatcctcatcat 91 ||||||||||||||||||||| Sbjct: 125640 acagtacatcatcctcatcat 125660
>gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, complete sequence Length = 200723 Score = 42.1 bits (21), Expect = 0.53 Identities = 24/25 (96%) Strand = Plus / Plus Query: 109 aagcaaacactgactgacaaaaaca 133 ||||||||||||||||| ||||||| Sbjct: 55962 aagcaaacactgactgaaaaaaaca 55986
>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14, complete sequence Length = 157039 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 acagtacatcatcctcatcat 91 ||||||||||||||||||||| Sbjct: 128445 acagtacatcatcctcatcat 128425
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 42.1 bits (21), Expect = 0.53 Identities = 21/21 (100%) Strand = Plus / Minus Query: 72 cagtacatcatcctcatcatt 92 ||||||||||||||||||||| Sbjct: 3820278 cagtacatcatcctcatcatt 3820258
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5 genes, complete cds; HOR5'Beta4 pseudogene, complete sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2 pseudogene, complete sequence; and HOR 5'Beta1 gene, complete cds Length = 219955 Score = 42.1 bits (21), Expect = 0.53 Identities = 24/25 (96%) Strand = Plus / Minus Query: 109 aagcaaacactgactgacaaaaaca 133 ||||||||||||||||| ||||||| Sbjct: 102608 aagcaaacactgactgaaaaaaaca 102584
>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence Length = 34107 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 agtacatcatcctcatcatt 92 |||||||||||||||||||| Sbjct: 2425 agtacatcatcctcatcatt 2406
>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene, complete cds Length = 2573 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cattgcatttcaaatttccc 40 |||||||||||||||||||| Sbjct: 1992 cattgcatttcaaatttccc 1973
>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence Length = 151902 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 aaatttccccccaagttacc 51 |||||||||||||||||||| Sbjct: 77542 aaatttccccccaagttacc 77561
>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete sequence Length = 212960 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 cacattgcatttcaaatttc 38 |||||||||||||||||||| Sbjct: 26652 cacattgcatttcaaatttc 26633
>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone BACR06C11, complete sequence Length = 174500 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cattgcatttcaaatttccc 40 |||||||||||||||||||| Sbjct: 148936 cattgcatttcaaatttccc 148917
>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones BACR01G10 and BACR05I08, complete sequence Length = 294942 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cattgcatttcaaatttccc 40 |||||||||||||||||||| Sbjct: 16921 cattgcatttcaaatttccc 16902
>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete sequence Length = 251192 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 cattgcatttcaaatttccc 40 |||||||||||||||||||| Sbjct: 179433 cattgcatttcaaatttccc 179414
>ref|NM_100103.1| Arabidopsis thaliana ANAC003; transcription factor AT1G02220 (ANAC003) mRNA, complete cds Length = 1185 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 catcatcctcatcattcat 95 ||||||||||||||||||| Sbjct: 670 catcatcctcatcattcat 652
>gb|BT020269.1| Arabidopsis thaliana At1g02220 mRNA, complete cds Length = 1353 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 catcatcctcatcattcat 95 ||||||||||||||||||| Sbjct: 750 catcatcctcatcattcat 732
>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence Length = 159722 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 107 ggaagcaaacactgactga 125 ||||||||||||||||||| Sbjct: 51779 ggaagcaaacactgactga 51761
>gb|AC125453.6| Homo sapiens chromosome 8, clone RP11-1049H7, complete sequence Length = 186608 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 tgactgacaaaaacacact 137 ||||||||||||||||||| Sbjct: 36354 tgactgacaaaaacacact 36336
>gb|AF239614.5| Homo sapiens chromosome 8 clone RP11-410N18, complete sequence Length = 152042 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 119 tgactgacaaaaacacact 137 ||||||||||||||||||| Sbjct: 115868 tgactgacaaaaacacact 115886
>emb|AL590556.20| Human DNA sequence from clone RP11-26H16 on chromosome 1 Contains a ribosomal protein L21 (RPL21) pseudogene, the 5' end of the HSPG2 gene for heparan sulfate proteoglycan 2 (perlecan), the ELA3B gene for elastase 3B (pancreatic) and the ELA3A gene for elastase 3A (pancreatic (protease E)), complete sequence Length = 118495 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 catcatcctcatcattcat 95 ||||||||||||||||||| Sbjct: 13165 catcatcctcatcattcat 13183
>emb|BX001029.16| Zebrafish DNA sequence from clone CH211-273K1 in linkage group 2, complete sequence Length = 141447 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 cattcataaacattacatg 107 ||||||||||||||||||| Sbjct: 66697 cattcataaacattacatg 66679
>gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 215955 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 ggaagcaaacactgactga 125 ||||||||||||||||||| Sbjct: 53341 ggaagcaaacactgactga 53359
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 ctcatcattcataaacatt 102 ||||||||||||||||||| Sbjct: 12233830 ctcatcattcataaacatt 12233812
>emb|BX815731.1|CNS0AAVD Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS89ZG04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1540 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 catcatcctcatcattcat 95 ||||||||||||||||||| Sbjct: 902 catcatcctcatcattcat 884
>gb|BT022063.1| Arabidopsis thaliana At1g02220 gene, complete cds Length = 1185 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 77 catcatcctcatcattcat 95 ||||||||||||||||||| Sbjct: 670 catcatcctcatcattcat 652
>gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complete sequence Length = 144784 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 16 gtacacattgcatttcaaatttc 38 ||||||||||||||| ||||||| Sbjct: 128618 gtacacattgcattttaaatttc 128640
>gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete sequence Length = 109180 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 catcatcctcatcattcat 95 ||||||||||||||||||| Sbjct: 24672 catcatcctcatcattcat 24690
>dbj|AP006556.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1010G04a Length = 61450 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 ctcatcattcataaacatt 102 ||||||||||||||||||| Sbjct: 14493 ctcatcattcataaacatt 14475
>gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228174 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 ggaagcaaacactgactga 125 ||||||||||||||||||| Sbjct: 185142 ggaagcaaacactgactga 185160
>gb|AC006143.1|AC006143 Homo sapiens PAC clone RP1-74M20 from X, complete sequence Length = 191544 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 104 catggaagcaaacactgactgac 126 |||||||| |||||||||||||| Sbjct: 98459 catggaagaaaacactgactgac 98437
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 tcatcctcatcattcataa 97 ||||||||||||||||||| Sbjct: 2049887 tcatcctcatcattcataa 2049905
>gb|AF003840.1|AF003840 Hydrolagus colliei immunoglobulin heavy chain putative D element-containing segment, partial V, D1, D2 and J regions Length = 1375 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 tgacagtacatcatcctca 87 ||||||||||||||||||| Sbjct: 622 tgacagtacatcatcctca 640
>gb|AC156836.6| Mus musculus BAC clone RP23-88L11 from chromosome 10, complete sequence Length = 255961 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 aaacattacatggaagcaa 114 ||||||||||||||||||| Sbjct: 207490 aaacattacatggaagcaa 207472
>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence Length = 106973 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 catcatcctcatcattcat 95 ||||||||||||||||||| Sbjct: 80044 catcatcctcatcattcat 80062 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,532,078 Number of Sequences: 3902068 Number of extensions: 1532078 Number of successful extensions: 118138 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 118008 Number of HSP's gapped (non-prelim): 129 length of query: 169 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 147 effective length of database: 17,147,199,772 effective search space: 2520638366484 effective search space used: 2520638366484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)