ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin ... 254 7e-65
2gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, co... 42 0.53
3emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 i... 42 0.53
4gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, co... 42 0.53
5emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 i... 42 0.53
6gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 42 0.53
7gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, H... 42 0.53
8emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, comple... 40 2.1
9tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (... 40 2.1
10gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complet... 40 2.1
11gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosom... 40 2.1
12gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36... 40 2.1
13gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, r... 40 2.1
14gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65... 40 2.1
15ref|NM_100103.1| Arabidopsis thaliana ANAC003; transcription fac... 38 8.2
16gb|BT020269.1| Arabidopsis thaliana At1g02220 mRNA, complete cds 38 8.2
17gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, c... 38 8.2
18gb|AC125453.6| Homo sapiens chromosome 8, clone RP11-1049H7, com... 38 8.2
19gb|AF239614.5| Homo sapiens chromosome 8 clone RP11-410N18, comp... 38 8.2
20emb|AL590556.20| Human DNA sequence from clone RP11-26H16 on chr... 38 8.2
21emb|BX001029.16| Zebrafish DNA sequence from clone CH211-273K1 i... 38 8.2
22gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cance... 38 8.2
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
24emb|BX815731.1|CNS0AAVD Arabidopsis thaliana Full-length cDNA Co... 38 8.2
25gb|BT022063.1| Arabidopsis thaliana At1g02220 gene, complete cds 38 8.2
26gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complet... 38 8.2
27gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A... 38 8.2
28dbj|AP006556.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.2
29gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cance... 38 8.2
30gb|AC006143.1|AC006143 Homo sapiens PAC clone RP1-74M20 from X, ... 38 8.2
31gb|AE015927.1| Clostridium tetani E88, complete genome 38 8.2
32gb|AF003840.1|AF003840 Hydrolagus colliei immunoglobulin heavy c... 38 8.2
33gb|AC156836.6| Mus musculus BAC clone RP23-88L11 from chromosome... 38 8.2
34gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence 38 8.2

>dbj|AB219525.1| Hordeum vulgare HvPIP2;4 mRNA for PIP aquaporin isoform, complete cds
          Length = 1343

 Score =  254 bits (128), Expect = 7e-65
 Identities = 141/144 (97%), Gaps = 1/144 (0%)
 Strand = Plus / Minus

                                                                        
Query: 3    aaccgaaccgtacgtacacattgcatttcaaatttcccccc-aagttacctggatgcgta 61
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1225 aaccgaaccgtacgtacacattgcatttcaaatttcccccccaagttacctggatgcgta 1166

                                                                        
Query: 62   catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 121
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 catgacatgacagtacatcatcctcatcattcataaacattacatggaagcaaacactga 1106

                                    
Query: 122  ctgacaaaaacacactcgatcggt 145
            ||||| || |||||||||||||||
Sbjct: 1105 ctgacgaagacacactcgatcggt 1082



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>gb|AC116395.21| Mus musculus chromosome 14, clone RP23-106K9, complete sequence
          Length = 218656

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 98     acattacatggaagcaaacac 118
              |||||||||||||||||||||
Sbjct: 152543 acattacatggaagcaaacac 152563



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>emb|BX004993.16| Zebrafish DNA sequence from clone CH211-163C2 in linkage group 7,
              complete sequence
          Length = 150136

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 71     acagtacatcatcctcatcat 91
              |||||||||||||||||||||
Sbjct: 125640 acagtacatcatcctcatcat 125660



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>gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, complete sequence
          Length = 200723

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 109   aagcaaacactgactgacaaaaaca 133
             ||||||||||||||||| |||||||
Sbjct: 55962 aagcaaacactgactgaaaaaaaca 55986



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>emb|BX323881.7| Zebrafish DNA sequence from clone CH211-274G13 in linkage group 14,
              complete sequence
          Length = 157039

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 71     acagtacatcatcctcatcat 91
              |||||||||||||||||||||
Sbjct: 128445 acagtacatcatcctcatcat 128425



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 72      cagtacatcatcctcatcatt 92
               |||||||||||||||||||||
Sbjct: 3820278 cagtacatcatcctcatcatt 3820258



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>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and
              HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and
              HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and
              HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin
              pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5
              genes, complete cds; HOR5'Beta4 pseudogene, complete
              sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2
              pseudogene, complete sequence; and HOR 5'Beta1 gene,
              complete cds
          Length = 219955

 Score = 42.1 bits (21), Expect = 0.53
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 109    aagcaaacactgactgacaaaaaca 133
              ||||||||||||||||| |||||||
Sbjct: 102608 aagcaaacactgactgaaaaaaaca 102584



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>emb|Z82265.1|CEF02H6 Caenorhabditis elegans Cosmid F02H6, complete sequence
          Length = 34107

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 73   agtacatcatcctcatcatt 92
            ||||||||||||||||||||
Sbjct: 2425 agtacatcatcctcatcatt 2406



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>tpg|BK003523.1| TPA: TPA_inf: Drosophila melanogaster HDC02994 (HDC02994) gene,
            complete cds
          Length = 2573

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   cattgcatttcaaatttccc 40
            ||||||||||||||||||||
Sbjct: 1992 cattgcatttcaaatttccc 1973



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>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaatttccccccaagttacc 51
             ||||||||||||||||||||
Sbjct: 77542 aaatttccccccaagttacc 77561



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>gb|AC160646.2| Gallus gallus BAC clone CH261-24P2 from chromosome unknown, complete
             sequence
          Length = 212960

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    cacattgcatttcaaatttc 38
             ||||||||||||||||||||
Sbjct: 26652 cacattgcatttcaaatttc 26633



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>gb|AC009202.7| Drosophila melanogaster, chromosome 2L, region 36D-36D, BAC clone
              BACR06C11, complete sequence
          Length = 174500

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     cattgcatttcaaatttccc 40
              ||||||||||||||||||||
Sbjct: 148936 cattgcatttcaaatttccc 148917



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>gb|AC011662.1|AC011662 Drosophila melanogaster, chromosome 2L, region 36D-, BAC clones
             BACR01G10 and BACR05I08, complete sequence
          Length = 294942

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    cattgcatttcaaatttccc 40
             ||||||||||||||||||||
Sbjct: 16921 cattgcatttcaaatttccc 16902



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>gb|AE003656.2| Drosophila melanogaster chromosome 2L, section 65 of 83 of the complete
              sequence
          Length = 251192

 Score = 40.1 bits (20), Expect = 2.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     cattgcatttcaaatttccc 40
              ||||||||||||||||||||
Sbjct: 179433 cattgcatttcaaatttccc 179414



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>ref|NM_100103.1| Arabidopsis thaliana ANAC003; transcription factor AT1G02220
           (ANAC003) mRNA, complete cds
          Length = 1185

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  catcatcctcatcattcat 95
           |||||||||||||||||||
Sbjct: 670 catcatcctcatcattcat 652



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>gb|BT020269.1| Arabidopsis thaliana At1g02220 mRNA, complete cds
          Length = 1353

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  catcatcctcatcattcat 95
           |||||||||||||||||||
Sbjct: 750 catcatcctcatcattcat 732



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>gb|AC125446.12| Mus musculus chromosome 14, clone RP24-501J23, complete sequence
          Length = 159722

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 107   ggaagcaaacactgactga 125
             |||||||||||||||||||
Sbjct: 51779 ggaagcaaacactgactga 51761



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>gb|AC125453.6| Homo sapiens chromosome 8, clone RP11-1049H7, complete sequence
          Length = 186608

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 119   tgactgacaaaaacacact 137
             |||||||||||||||||||
Sbjct: 36354 tgactgacaaaaacacact 36336



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>gb|AF239614.5| Homo sapiens chromosome 8 clone RP11-410N18, complete sequence
          Length = 152042

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 119    tgactgacaaaaacacact 137
              |||||||||||||||||||
Sbjct: 115868 tgactgacaaaaacacact 115886



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>emb|AL590556.20| Human DNA sequence from clone RP11-26H16 on chromosome 1 Contains a
             ribosomal protein L21 (RPL21) pseudogene,  the 5' end of
             the HSPG2 gene for heparan sulfate proteoglycan 2
             (perlecan), the ELA3B gene for elastase 3B (pancreatic)
             and the ELA3A gene for elastase 3A (pancreatic (protease
             E)), complete sequence
          Length = 118495

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    catcatcctcatcattcat 95
             |||||||||||||||||||
Sbjct: 13165 catcatcctcatcattcat 13183



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>emb|BX001029.16| Zebrafish DNA sequence from clone CH211-273K1 in linkage group 2,
             complete sequence
          Length = 141447

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 89    cattcataaacattacatg 107
             |||||||||||||||||||
Sbjct: 66697 cattcataaacattacatg 66679



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>gb|AC153905.5| Mus musculus 6 BAC RP23-215A7 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 215955

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 107   ggaagcaaacactgactga 125
             |||||||||||||||||||
Sbjct: 53341 ggaagcaaacactgactga 53359



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 84       ctcatcattcataaacatt 102
                |||||||||||||||||||
Sbjct: 12233830 ctcatcattcataaacatt 12233812



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>emb|BX815731.1|CNS0AAVD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS89ZG04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1540

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  catcatcctcatcattcat 95
           |||||||||||||||||||
Sbjct: 902 catcatcctcatcattcat 884



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>gb|BT022063.1| Arabidopsis thaliana At1g02220 gene, complete cds
          Length = 1185

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  catcatcctcatcattcat 95
           |||||||||||||||||||
Sbjct: 670 catcatcctcatcattcat 652



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>gb|AC009224.6| Homo sapiens BAC clone RP11-92G23 from 2, complete sequence
          Length = 144784

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 16     gtacacattgcatttcaaatttc 38
              ||||||||||||||| |||||||
Sbjct: 128618 gtacacattgcattttaaatttc 128640



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>gb|AC064879.3|AC064879 Arabidopsis thaliana chromosome I BAC T6A9 genomic sequence, complete
             sequence
          Length = 109180

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    catcatcctcatcattcat 95
             |||||||||||||||||||
Sbjct: 24672 catcatcctcatcattcat 24690



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>dbj|AP006556.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1010G04a
          Length = 61450

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 84    ctcatcattcataaacatt 102
             |||||||||||||||||||
Sbjct: 14493 ctcatcattcataaacatt 14475



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>gb|AC153603.3| Mus musculus 6 BAC RP23-315I7 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 228174

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 107    ggaagcaaacactgactga 125
              |||||||||||||||||||
Sbjct: 185142 ggaagcaaacactgactga 185160



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>gb|AC006143.1|AC006143 Homo sapiens PAC clone RP1-74M20 from X, complete sequence
          Length = 191544

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 104   catggaagcaaacactgactgac 126
             |||||||| ||||||||||||||
Sbjct: 98459 catggaagaaaacactgactgac 98437



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>gb|AE015927.1| Clostridium tetani E88, complete genome
          Length = 2799251

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 79      tcatcctcatcattcataa 97
               |||||||||||||||||||
Sbjct: 2049887 tcatcctcatcattcataa 2049905



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>gb|AF003840.1|AF003840 Hydrolagus colliei immunoglobulin heavy chain putative D
           element-containing segment, partial V, D1, D2 and J
           regions
          Length = 1375

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 69  tgacagtacatcatcctca 87
           |||||||||||||||||||
Sbjct: 622 tgacagtacatcatcctca 640



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>gb|AC156836.6| Mus musculus BAC clone RP23-88L11 from chromosome 10, complete sequence
          Length = 255961

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 96     aaacattacatggaagcaa 114
              |||||||||||||||||||
Sbjct: 207490 aaacattacatggaagcaa 207472



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>gb|U89959.1| Arabidopsis thaliana BAC T7I23, complete sequence
          Length = 106973

 Score = 38.2 bits (19), Expect = 8.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    catcatcctcatcattcat 95
             |||||||||||||||||||
Sbjct: 80044 catcatcctcatcattcat 80062


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,532,078
Number of Sequences: 3902068
Number of extensions: 1532078
Number of successful extensions: 118138
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118008
Number of HSP's gapped (non-prelim): 129
length of query: 169
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 147
effective length of database: 17,147,199,772
effective search space: 2520638366484
effective search space used: 2520638366484
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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