ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_507434.1| PREDICTED Oryza sativa (japonica cultivar-group... 192 6e-46
2ref|XM_463983.1| Oryza sativa (japonica cultivar-group), mRNA 192 6e-46
3ref|XM_506704.2| PREDICTED Oryza sativa (japonica cultivar-group... 192 6e-46
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 192 6e-46
5dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 192 6e-46
6dbj|AK119901.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 6e-46
7dbj|AK111954.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 6e-46
8dbj|AK111795.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 6e-46
9dbj|AK104468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 6e-46
10gb|AY108731.1| Zea mays PCO091740 mRNA sequence 155 1e-34
11gb|AY111385.1| Zea mays CL5847_2 mRNA sequence 113 4e-22
12gb|AY111019.1| Zea mays CL5847_1 mRNA sequence 98 3e-17
13gb|BT018072.1| Zea mays clone EL01N0551E04.c mRNA sequence 82 2e-12
14gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
15dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
16ref|NM_188653.1| Oryza sativa (japonica cultivar-group), Ozsa825... 68 2e-08
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
18dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
19dbj|AK120816.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
20emb|AJ234433.1|HVU234433 Hordeum vulgare partial mRNA; clone cMW... 66 9e-08
21gb|AY112382.1| Zea mays CL4283_1 mRNA sequence 66 9e-08
22ref|XM_479411.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
24dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
25dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
26dbj|AK107155.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
27gb|AY389663.1| Hyacinthus orientalis SINA (SINA) mRNA, partial cds 50 0.006
28gb|DQ013805.1| Phyllostachys praecox SINA mRNA, partial cds 48 0.022
29gb|AY104660.1| Zea mays PCO141288 mRNA sequence 48 0.022
30emb|Y18471.1|VVI18471 Vitis vinifera mRNA for zinc finger protei... 42 1.4
31gb|AC132058.5| Rattus norvegicus 18 BAC CH230-229M9 (Children's ... 42 1.4
32emb|BX677664.9| Zebrafish DNA sequence from clone DKEYP-122B11 i... 42 1.4
33emb|BX649367.6| Zebrafish DNA sequence from clone CH211-133F22 i... 42 1.4
34ref|XM_465055.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.3
35emb|BX950874.9| Zebrafish DNA sequence from clone CH211-128I1, c... 40 5.3
36gb|AC153646.3| Mus musculus BAC clone RP24-493K8 from chromosome... 40 5.3
37dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.3
38dbj|AK072985.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.3
39gb|AY106504.1| Zea mays PCO073771 mRNA sequence 40 5.3
40gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic se... 40 5.3
41gb|AF061511.1|AF061511 Zea mays seven in absentia homolog mRNA, ... 40 5.3
42gb|AC127590.3| Mus musculus BAC clone RP23-147I5 from 13, comple... 40 5.3
43gb|L34110.1|HS5VR194 Murine cytomegalovirus gene, complete cds 40 5.3 
>ref|XM_507434.1| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA
          Length = 1378

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
            |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1140 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 1081

                                                                        
Query: 310  tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
             ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 1080 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 1021

                                     
Query: 370  tcttgtgcccgtcccggatgctccg 394
            ||||||| | ||||| |||||||||
Sbjct: 1020 tcttgtggctgtccctgatgctccg 996
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>ref|XM_463983.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1312

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
            |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1067 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 1008

                                                                        
Query: 310  tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
             ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 1007 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 948

                                     
Query: 370  tcttgtgcccgtcccggatgctccg 394
            ||||||| | ||||| |||||||||
Sbjct: 947  tcttgtggctgtccctgatgctccg 923
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>ref|XM_506704.2| PREDICTED Oryza sativa (japonica cultivar-group), P0576F08.10 mRNA
          Length = 1338

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
            |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1067 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 1008

                                                                        
Query: 310  tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
             ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 1007 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 948

                                     
Query: 370  tcttgtgcccgtcccggatgctccg 394
            ||||||| | ||||| |||||||||
Sbjct: 947  tcttgtggctgtccctgatgctccg 923
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Plus

                                                                           
Query: 250     gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
               |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1481510 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 1481569

                                                                           
Query: 310     tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
                ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 1481570 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 1481629

                                        
Query: 370     tcttgtgcccgtcccggatgctccg 394
               ||||||| | ||||| |||||||||
Sbjct: 1481630 tcttgtggctgtccctgatgctccg 1481654



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 258      tccttccagatgcggccggtcacccgca 285
                ||||||||||| |||||||| |||||||
Sbjct: 11156643 tccttccagattcggccggtgacccgca 11156670
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Plus

                                                                         
Query: 250   gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
             |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 44931 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 44990

                                                                         
Query: 310   tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
              ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 44991 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 45050

                                      
Query: 370   tcttgtgcccgtcccggatgctccg 394
             ||||||| | ||||| |||||||||
Sbjct: 45051 tcttgtggctgtccctgatgctccg 45075
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>dbj|AK119901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-181-D02, full
            insert sequence
          Length = 1359

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
            |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1067 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 1008

                                                                        
Query: 310  tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
             ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 1007 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 948

                                     
Query: 370  tcttgtgcccgtcccggatgctccg 394
            ||||||| | ||||| |||||||||
Sbjct: 947  tcttgtggctgtccctgatgctccg 923
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>dbj|AK111954.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-028-D05, full
           insert sequence
          Length = 937

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                       
Query: 250 gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
           |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 692 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 633

                                                                       
Query: 310 tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
            ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 632 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 573

                                    
Query: 370 tcttgtgcccgtcccggatgctccg 394
           ||||||| | ||||| |||||||||
Sbjct: 572 tcttgtggctgtccctgatgctccg 548
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>dbj|AK111795.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105K22, full
            insert sequence
          Length = 1378

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
            |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1140 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 1081

                                                                        
Query: 310  tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
             ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 1080 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 1021

                                     
Query: 370  tcttgtgcccgtcccggatgctccg 394
            ||||||| | ||||| |||||||||
Sbjct: 1020 tcttgtggctgtccctgatgctccg 996
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>dbj|AK104468.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D04, full
            insert sequence
          Length = 1312

 Score =  192 bits (97), Expect = 6e-46
 Identities = 133/145 (91%)
 Strand = Plus / Minus

                                                                        
Query: 250  gtcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgc 309
            |||| ||||||||||||||||||||||| |||||||||||||||||||||| | ||||||
Sbjct: 1067 gtcattgctccttccagatgcggccggtaacccgcagcttgagctcctgcctgttgccgc 1008

                                                                        
Query: 310  tggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacct 369
             ||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 1007 cggagaagaagagggccatgttccggtggatgatgaggccgtcgaagctgtcccggacct 948

                                     
Query: 370  tcttgtgcccgtcccggatgctccg 394
            ||||||| | ||||| |||||||||
Sbjct: 947  tcttgtggctgtccctgatgctccg 923
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>gb|AY108731.1| Zea mays PCO091740 mRNA sequence
          Length = 1475

 Score =  155 bits (78), Expect = 1e-34
 Identities = 129/146 (88%)
 Strand = Plus / Minus

                                                                        
Query: 255  tgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctggag 314
            |||||| |||||||||||||||| |||||||||||||||||||||| |  |||||  |||
Sbjct: 1161 tgctccctccagatgcggccggtgacccgcagcttgagctcctgcctgccgccgcccgag 1102

                                                                        
Query: 315  aagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttcttg 374
            |||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||  |
Sbjct: 1101 aagaagagcgccatgttcctgtggatgatgagcccgtcgaagctgtcccgcaccttccgg 1042

                                      
Query: 375  tgcccgtcccggatgctccgcggcgt 400
            || | ||||| || ||||||||||||
Sbjct: 1041 tggctgtccctgacgctccgcggcgt 1016
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>gb|AY111385.1| Zea mays CL5847_2 mRNA sequence
          Length = 838

 Score =  113 bits (57), Expect = 4e-22
 Identities = 105/121 (86%)
 Strand = Plus / Minus

                                                                       
Query: 251 tcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgct 310
           |||||||||||||||||| |  ||||| ||||||||||||||||||| || |  ||| | 
Sbjct: 298 tcactgctccttccagatcctcccggtgacccgcagcttgagctccttcctgtcgccacc 239

                                                                       
Query: 311 ggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacctt 370
            ||||||||||| ||||||||||| |||||||||||||| ||| |||||||||| |||||
Sbjct: 238 cgagaagaagagcgccatgttgcgctggatgatgagcccgtcgtagctgtcccggacctt 179

            
Query: 371 c 371
           |
Sbjct: 178 c 178
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>gb|AY111019.1| Zea mays CL5847_1 mRNA sequence
          Length = 1435

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 115/137 (83%)
 Strand = Plus / Minus

                                                                        
Query: 258  tccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctggagaag 317
            ||||||||||| || ||||| || |||||||||||||||| || |  |||||  ||||||
Sbjct: 1129 tccttccagatccgcccggtgacacgcagcttgagctccttcctgtcgccgcccgagaag 1070

                                                                        
Query: 318  aagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttcttgtgc 377
            || ||||||||||| |  |||||||||||||| ||| |||||||||| ||||||  ||| 
Sbjct: 1069 aacagggccatgttcctctggatgatgagcccgtcgtagctgtcccggaccttccggtgg 1010

                             
Query: 378  ccgtcccggatgctccg 394
            | ||||| |||||||||
Sbjct: 1009 ctgtccctgatgctccg 993
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>gb|BT018072.1| Zea mays clone EL01N0551E04.c mRNA sequence
          Length = 649

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 101/121 (83%)
 Strand = Plus / Minus

                                                                       
Query: 251 tcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgct 310
           |||||||||||||||||| |  ||||  ||||||||||||||||||| || |  ||| | 
Sbjct: 266 tcactgctccttccagatcctcccggggacccgcagcttgagctccttcctgtcgccacc 207

                                                                       
Query: 311 ggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacctt 370
            || ||||| || ||||||||||| |||||||||||||| ||| | |||||||| |||||
Sbjct: 206 cgaaaagaaaagcgccatgttgcgctggatgatgagcccgtcgtaactgtcccggacctt 147

            
Query: 371 c 371
           |
Sbjct: 146 c 146
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>gb|AC105768.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1122_B08,
             complete sequence
          Length = 143955

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 110/133 (82%)
 Strand = Plus / Minus

                                                                         
Query: 261   ttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctggagaagaag 320
             |||||||| ||||||||||||| |||||| ||||||| || |   |||| ||||||||||
Sbjct: 66113 ttccagatacggccggtcaccctcagcttcagctccttcctgtcaccgccggagaagaag 66054

                                                                         
Query: 321   agggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttcttgtgcccg 380
             || |||||||| |  ||||||||||| || ||   ||||||||||||||||  ||| | |
Sbjct: 66053 agtgccatgttcctctggatgatgaggccgtcatggctgtcccgcaccttccggtggctg 65994

                          
Query: 381   tcccggatgctcc 393
             || ||||||||||
Sbjct: 65993 tcgcggatgctcc 65981
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 110/133 (82%)
 Strand = Plus / Minus

                                                                           
Query: 261     ttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctggagaagaag 320
               |||||||| ||||||||||||| |||||| ||||||| || |   |||| ||||||||||
Sbjct: 8345069 ttccagatacggccggtcaccctcagcttcagctccttcctgtcaccgccggagaagaag 8345010

                                                                           
Query: 321     agggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttcttgtgcccg 380
               || |||||||| |  ||||||||||| || ||   ||||||||||||||||  ||| | |
Sbjct: 8345009 agtgccatgttcctctggatgatgaggccgtcatggctgtcccgcaccttccggtggctg 8344950

                            
Query: 381     tcccggatgctcc 393
               || ||||||||||
Sbjct: 8344949 tcgcggatgctcc 8344937
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>ref|NM_188653.1| Oryza sativa (japonica cultivar-group), Ozsa8256 predicted mRNA
          Length = 1146

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 97/118 (82%)
 Strand = Plus / Minus

                                                                        
Query: 254  ctgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctgga 313
            ||||||||||||||| |||||||| | || |||||| |||||||  |||  ||| |  ||
Sbjct: 1104 ctgctccttccagatccggccggtgatcctcagcttcagctcctttcggtcgccccccga 1045

                                                                      
Query: 314  gaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
            |||||| || |||||||| |  ||||||||||| |||||   ||||||||||||||||
Sbjct: 1044 gaagaacagcgccatgttcctctggatgatgaggccatcatggctgtcccgcaccttc 987
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                           
Query: 254     ctgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctgga 313
               ||||||||||||||| |||||||| | || |||||| |||||||  |||  ||| |  ||
Sbjct: 7450186 ctgctccttccagatccggccggtgatcctcagcttcagctcctttcggtcgccccccga 7450245

                                                                         
Query: 314     gaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
               |||||| || |||||||| |  ||||||||||| |||||   ||||||||||||||||
Sbjct: 7450246 gaagaacagcgccatgttcctctggatgatgaggccatcatggctgtcccgcaccttc 7450303
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>dbj|AP002481.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0702F03
          Length = 141111

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 97/118 (82%)
 Strand = Plus / Plus

                                                                          
Query: 254    ctgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctgga 313
              ||||||||||||||| |||||||| | || |||||| |||||||  |||  ||| |  ||
Sbjct: 111214 ctgctccttccagatccggccggtgatcctcagcttcagctcctttcggtcgccccccga 111273

                                                                        
Query: 314    gaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
              |||||| || |||||||| |  ||||||||||| |||||   ||||||||||||||||
Sbjct: 111274 gaagaacagcgccatgttcctctggatgatgaggccatcatggctgtcccgcaccttc 111331
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>dbj|AK120816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014O08, full
            insert sequence
          Length = 1687

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 97/118 (82%)
 Strand = Plus / Minus

                                                                        
Query: 254  ctgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctgga 313
            ||||||||||||||| |||||||| | || |||||| |||||||  |||  ||| |  ||
Sbjct: 1437 ctgctccttccagatccggccggtgatcctcagcttcagctcctttcggtcgccccccga 1378

                                                                      
Query: 314  gaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
            |||||| || |||||||| |  ||||||||||| |||||   ||||||||||||||||
Sbjct: 1377 gaagaacagcgccatgttcctctggatgatgaggccatcatggctgtcccgcaccttc 1320
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>emb|AJ234433.1|HVU234433 Hordeum vulgare partial mRNA; clone cMWG0714
          Length = 464

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 78/93 (83%)
 Strand = Plus / Minus

                                                                       
Query: 254 ctgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctgga 313
           ||||||||||||||||||||| ||||||||||| || ||||| | ||     |||| |||
Sbjct: 114 ctgctccttccagatgcggccagtcacccgcagtttcagctctttcctctccccgccgga 55

                                            
Query: 314 gaagaagagggccatgttgcggtggatgatgag 346
           ||||||||| |||||||| || ||||| |||||
Sbjct: 54  gaagaagagtgccatgttccgctggattatgag 22
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>gb|AY112382.1| Zea mays CL4283_1 mRNA sequence
          Length = 603

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 96/117 (82%)
 Strand = Plus / Plus

                                                                       
Query: 254 ctgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgctgga 313
           |||||| |||||||| || ||||| | ||  ||||||||||||| ||||   |||| |||
Sbjct: 217 ctgctctttccagatccgtccggtgatcctgagcttgagctccttccggtccccgccgga 276

                                                                    
Query: 314 gaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcacctt 370
           ||||||||| |||||||| |  ||||||||||| || |||  |||||||| ||||||
Sbjct: 277 gaagaagagcgccatgttcctctggatgatgaggccgtcgtggctgtccctcacctt 333
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>ref|XM_479411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1520

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                        
Query: 251  tcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgct 310
            ||||||||||||||| || |  ||||| || ||||| |||||||||| |  |  ||| | 
Sbjct: 1064 tcactgctccttccaaatccttccggtgacacgcagtttgagctccttcttgtcgccacc 1005

                                                                  
Query: 311  ggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccg 364
            ||||||||| | ||||||||| || |||||||| || || ||| ||||||||||
Sbjct: 1004 ggagaagaacaaggccatgttccgctggatgataaggccgtcgtagctgtcccg 951
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                            
Query: 251      tcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgct 310
                ||||||||||||||| || |  ||||| || ||||| |||||||||| |  |  ||| | 
Sbjct: 27757496 tcactgctccttccaaatccttccggtgacacgcagtttgagctccttcttgtcgccacc 27757437

                                                                      
Query: 311      ggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccg 364
                ||||||||| | ||||||||| || |||||||| || || ||| ||||||||||
Sbjct: 27757436 ggagaagaacaaggccatgttccgctggatgataaggccgtcgtagctgtcccg 27757383
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>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496C02
          Length = 148419

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                         
Query: 251   tcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgct 310
             ||||||||||||||| || |  ||||| || ||||| |||||||||| |  |  ||| | 
Sbjct: 49875 tcactgctccttccaaatccttccggtgacacgcagtttgagctccttcttgtcgccacc 49816

                                                                   
Query: 311   ggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccg 364
             ||||||||| | ||||||||| || |||||||| || || ||| ||||||||||
Sbjct: 49815 ggagaagaacaaggccatgttccgctggatgataaggccgtcgtagctgtcccg 49762
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>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1477_F01
          Length = 158792

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                          
Query: 251    tcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgct 310
              ||||||||||||||| || |  ||||| || ||||| |||||||||| |  |  ||| | 
Sbjct: 136598 tcactgctccttccaaatccttccggtgacacgcagtttgagctccttcttgtcgccacc 136539

                                                                    
Query: 311    ggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccg 364
              ||||||||| | ||||||||| || |||||||| || || ||| ||||||||||
Sbjct: 136538 ggagaagaacaaggccatgttccgctggatgataaggccgtcgtagctgtcccg 136485
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>dbj|AK107155.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-E07, full
            insert sequence
          Length = 1521

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 92/114 (80%)
 Strand = Plus / Minus

                                                                        
Query: 251  tcactgctccttccagatgcggccggtcacccgcagcttgagctcctgccgggtgccgct 310
            ||||||||||||||| || |  ||||| || ||||| |||||||||| |  |  ||| | 
Sbjct: 1065 tcactgctccttccaaatccttccggtgacacgcagtttgagctccttcttgtcgccacc 1006

                                                                  
Query: 311  ggagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccg 364
            ||||||||| | ||||||||| || |||||||| || || ||| ||||||||||
Sbjct: 1005 ggagaagaacaaggccatgttccgctggatgataaggccgtcgtagctgtcccg 952
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>gb|AY389663.1| Hyacinthus orientalis SINA (SINA) mRNA, partial cds
          Length = 574

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                       
Query: 312 gagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
           |||||||||||||| |||||||| |||||||  | | ||||| ||||||| || ||||||
Sbjct: 266 gagaagaagagggcgatgttgcgttggatgacaatcgcatcgtagctgtcacgaaccttc 207

                
Query: 372 ttgtg 376
            ||||
Sbjct: 206 ctgtg 202
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>gb|DQ013805.1| Phyllostachys praecox SINA mRNA, partial cds
          Length = 1055

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 66/80 (82%)
 Strand = Plus / Minus

                                                                       
Query: 312 gagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
           |||||||| || ||||||||||| || || ||||| ||||||  ||||||||  ||||||
Sbjct: 718 gagaagaatagagccatgttgcgctgaataatgaggccatcgtggctgtccctaaccttc 659

                               
Query: 372 ttgtgcccgtcccggatgct 391
             ||| | ||||||||||||
Sbjct: 658 cggtggctgtcccggatgct 639
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>gb|AY104660.1| Zea mays PCO141288 mRNA sequence
          Length = 678

 Score = 48.1 bits (24), Expect = 0.022
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 254 ctgctccttccagatgcggccggtcacccgcagcttgagctcct 297
           ||||||||||||||| || || ||||||| |||||| |||||||
Sbjct: 411 ctgctccttccagatccgcccagtcaccctcagcttcagctcct 368
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>emb|Y18471.1|VVI18471 Vitis vinifera mRNA for zinc finger protein (SINA1p)
          Length = 1436

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 324  gccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttcttgtg 376
            ||||||||||| ||||| ||||| ||||||  ||||||||  ||||| |||||
Sbjct: 1107 gccatgttgcgctggattatgaggccatcgtggctgtccctgacctttttgtg 1055
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>gb|AC132058.5| Rattus norvegicus 18 BAC CH230-229M9 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 228492

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 211    ggcacgctccgaaggagaagg 231
              |||||||||||||||||||||
Sbjct: 127073 ggcacgctccgaaggagaagg 127053
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>emb|BX677664.9| Zebrafish DNA sequence from clone DKEYP-122B11 in linkage group 2,
              complete sequence
          Length = 170975

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 306    ccgctggagaagaagagggcc 326
              |||||||||||||||||||||
Sbjct: 106776 ccgctggagaagaagagggcc 106796
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>emb|BX649367.6| Zebrafish DNA sequence from clone CH211-133F22 in linkage group 20,
             complete sequence
          Length = 161289

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 306   ccgctggagaagaagagggcc 326
             |||||||||||||||||||||
Sbjct: 98354 ccgctggagaagaagagggcc 98334
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>ref|XM_465055.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1750

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 258  tccttccagatgcggccggtcacccgca 285
            ||||||||||| |||||||| |||||||
Sbjct: 1298 tccttccagattcggccggtgacccgca 1271
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>emb|BX950874.9| Zebrafish DNA sequence from clone CH211-128I1, complete sequence
          Length = 177114

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 162    agacatgctggagccacaac 181
              ||||||||||||||||||||
Sbjct: 170120 agacatgctggagccacaac 170139
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>gb|AC153646.3| Mus musculus BAC clone RP24-493K8 from chromosome 13, complete sequence
          Length = 166314

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    acaccaagtagcagcacaagtagc 83
             |||||||||||| |||||||||||
Sbjct: 64672 acaccaagtagctgcacaagtagc 64695
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>dbj|AP003988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1057_D08
          Length = 119557

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 258   tccttccagatgcggccggtcacccgca 285
             ||||||||||| |||||||| |||||||
Sbjct: 75822 tccttccagattcggccggtgacccgca 75849
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>dbj|AK072985.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023149D24, full
            insert sequence
          Length = 1749

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 258  tccttccagatgcggccggtcacccgca 285
            ||||||||||| |||||||| |||||||
Sbjct: 1297 tccttccagattcggccggtgacccgca 1270
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>gb|AY106504.1| Zea mays PCO073771 mRNA sequence
          Length = 1216

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                       
Query: 312 gagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
           ||||||||||| ||||||||||| || || || || |||||   ||||||||  ||||||
Sbjct: 758 gagaagaagagagccatgttgcgctgaattattagaccatcatggctgtccctaaccttc 699

                               
Query: 372 ttgtgcccgtcccggatgct 391
             ||| | ||||||||||||
Sbjct: 698 cggtggctgtcccggatgct 679
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>gb|U68299.1|MCU68299 Mouse cytomegalovirus 1 complete genomic sequence
          Length = 230278

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   gagccatggctcgtcgtcgg 250
             ||||||||||||||||||||
Sbjct: 57090 gagccatggctcgtcgtcgg 57109
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>gb|AF061511.1|AF061511 Zea mays seven in absentia homolog mRNA, partial cds
          Length = 658

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                       
Query: 312 gagaagaagagggccatgttgcggtggatgatgagcccatcgaagctgtcccgcaccttc 371
           ||||||||||| ||||||||||| || || || || |||||   ||||||||  ||||||
Sbjct: 249 gagaagaagagagccatgttgcgctgaattattagaccatcatggctgtccctaaccttc 190

                               
Query: 372 ttgtgcccgtcccggatgct 391
             ||| | ||||||||||||
Sbjct: 189 cggtggctgtcccggatgct 170
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>gb|AC127590.3| Mus musculus BAC clone RP23-147I5 from 13, complete sequence
          Length = 208251

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 60     acaccaagtagcagcacaagtagc 83
              |||||||||||| |||||||||||
Sbjct: 195524 acaccaagtagctgcacaagtagc 195547
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>gb|L34110.1|HS5VR194 Murine cytomegalovirus gene, complete cds
          Length = 1747

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 231  gagccatggctcgtcgtcgg 250
            ||||||||||||||||||||
Sbjct: 1744 gagccatggctcgtcgtcgg 1725


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,914,474
Number of Sequences: 3902068
Number of extensions: 2914474
Number of successful extensions: 50574
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 50435
Number of HSP's gapped (non-prelim): 136
length of query: 400
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 378
effective length of database: 17,147,199,772
effective search space: 6481641513816
effective search space used: 6481641513816
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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