ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TMP14_ARATH (Q8LCA1) Thylakoid membrane phosphoprotein 14 kDa, c... 35 0.062
2VGLI_VZVD (P09258) Glycoprotein I precursor (Glycoprotein IV) (G... 33 0.40
3NEC1_MUSCO (P63240) Neuroendocrine convertase 1 precursor (EC 3.... 29 5.8
4NEC1_MOUSE (P63239) Neuroendocrine convertase 1 precursor (EC 3.... 29 5.8
5SEC16_SCHPO (O14029) Multidomain vesicle coat protein 28 9.9

>TMP14_ARATH (Q8LCA1) Thylakoid membrane phosphoprotein 14 kDa, chloroplast|
           precursor
          Length = 174

 Score = 35.4 bits (80), Expect = 0.062
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 379 YTGWFVYRYLLFKESRKELATDIESFKKKIAGT 281
           YTGWF Y+ L+FK  R+ L   ++S  K I G+
Sbjct: 141 YTGWFTYKNLVFKPDREALFEKVKSTYKDILGS 173



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>VGLI_VZVD (P09258) Glycoprotein I precursor (Glycoprotein IV) (GI) (GPIV)|
          Length = 354

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 17/63 (26%), Positives = 34/63 (53%)
 Frame = +3

Query: 234 LDKRAIRNVPENRVYSVPAIFFLKLSMSVANSFLLSLKRR*RYTNHPVYPSPTSSRSLGS 413
           L ++++ + PEN +  +P +  + +  ++    ++S+KRR R   HP+Y   T +R    
Sbjct: 261 LPEKSLNDPPENLLIIIPIVASVMILTAMVIVIVISVKRR-RIKKHPIYRPNTKTRRGIQ 319

Query: 414 NGT 422
           N T
Sbjct: 320 NAT 322



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>NEC1_MUSCO (P63240) Neuroendocrine convertase 1 precursor (EC 3.4.21.93) (NEC|
           1) (PC1) (Prohormone convertase 1) (Proprotein
           convertase 1) (PC3) (Furin homolog)
           (Propeptide-processing protease)
          Length = 753

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 HYIIRQKSHPKRSREPSL 277
           HY+ + KSHP+RSR  +L
Sbjct: 67  HYLFKHKSHPRRSRRSAL 84



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>NEC1_MOUSE (P63239) Neuroendocrine convertase 1 precursor (EC 3.4.21.93) (NEC|
           1) (PC1) (Prohormone convertase 1) (Proprotein
           convertase 1) (PC3) (Furin homolog)
           (Propeptide-processing protease)
          Length = 753

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 224 HYIIRQKSHPKRSREPSL 277
           HY+ + KSHP+RSR  +L
Sbjct: 67  HYLFKHKSHPRRSRRSAL 84



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>SEC16_SCHPO (O14029) Multidomain vesicle coat protein|
          Length = 1995

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 264  ENRVYSVPAIFFLKLSMSVANSFLLSLKRR*RYTNHPVYPS 386
            ENRVY+   ++ L LS  V ++   SL      + H +YPS
Sbjct: 1396 ENRVYAAHLVYILSLSPDVCSNKSNSLFELVGLSKHNLYPS 1436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,234,606
Number of Sequences: 219361
Number of extensions: 1169037
Number of successful extensions: 4064
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4064
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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