| Clone Name | rbaet65f10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128O15, full insert sequence Length = 1368 Score = 168 bits (85), Expect = 6e-39 Identities = 169/197 (85%) Strand = Plus / Minus Query: 107 tggaagatgctgctgacagagcactcgtcgtggaccccccaaatggtctcgccgaggagg 166 ||||||||||| ||||||||||| |||||||| || | ||| ||||||||||||||||| Sbjct: 1175 tggaagatgctactgacagagcagtcgtcgtgaacgcgccagatggtctcgccgaggaga 1116 Query: 167 ttggcgacggaaagcacggtgagctgcgggaatcgctggtccggcggcaccggcacggtg 226 ||||||||||| || ||||||||||| ||||| | ||| | |||| || |||||| Sbjct: 1115 ttggcgacggagaggacggtgagctgggggaaggtccggtggtgaagcacggggacggtg 1056 Query: 227 ttggtgatgatcacctcctgaaaaaggccgccggaaagcctctcgacggcgggcaggctg 286 ||||||| |||||||||||| || ||||||| ||| ||||| |||||||||||| ||||| Sbjct: 1055 ttggtgacgatcacctcctggaagaggccgctggagagcctgtcgacggcgggcgggctg 996 Query: 287 agcacggcgtgggtgct 303 ||||||||||||||||| Sbjct: 995 agcacggcgtgggtgct 979
>emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster Length = 64650 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 213 gcaccggcacggtgttggtga 233 ||||||||||||||||||||| Sbjct: 26771 gcaccggcacggtgttggtga 26751
>ref|XM_957472.1| Neurospora crassa OR74A hypothetical protein (NCU06303.1) partial mRNA Length = 1128 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cggaaagcctctcgacggcg 277 |||||||||||||||||||| Sbjct: 369 cggaaagcctctcgacggcg 388
>ref|XM_326157.1| Neurospora crassa OR74A hypothetical protein (NCU06303.1) partial mRNA Length = 1128 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 258 cggaaagcctctcgacggcg 277 |||||||||||||||||||| Sbjct: 369 cggaaagcctctcgacggcg 388
>gb|AC139335.3| Mus musculus BAC clone RP23-376N11 from chromosome 10, complete sequence Length = 195132 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaacaaaaagtgacagatg 44 |||||||||||||||||||| Sbjct: 131109 aaaacaaaaagtgacagatg 131090
>gb|AC157897.2| Mus musculus chromosome 15, clone RP23-442E13, complete sequence Length = 186421 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 ttgtaatgtagtaagatgatatgt 68 ||||||||||||| |||||||||| Sbjct: 87734 ttgtaatgtagtaggatgatatgt 87757
>ref|XM_390635.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10459.1) partial mRNA Length = 3285 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 tctcgccgaggaggttggcg 172 |||||||||||||||||||| Sbjct: 828 tctcgccgaggaggttggcg 847
>gb|AC103347.5| Mus musculus chromosome 15, clone RP24-377A20, complete sequence Length = 132749 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 ttgtaatgtagtaagatgatatgt 68 ||||||||||||| |||||||||| Sbjct: 132453 ttgtaatgtagtaggatgatatgt 132476
>gb|BC054076.1| Mus musculus protein phosphatase 1, regulatory (inhibitor) subunit 12A, mRNA (cDNA clone IMAGE:5401263), partial cds Length = 5118 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaacaaaaagtgacagatg 44 |||||||||||||||||||| Sbjct: 3140 aaaacaaaaagtgacagatg 3121
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 40.1 bits (20), Expect = 4.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 205 gtccggcggcaccggcacggtgttggtg 232 ||||| ||| |||||||||||||||||| Sbjct: 238922 gtccgccgggaccggcacggtgttggtg 238949
>gb|AC096642.2| Homo sapiens chromosome 1 clone RP11-392O17, complete sequence Length = 179048 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 ggaaaacaaaaagtgacaga 42 |||||||||||||||||||| Sbjct: 70360 ggaaaacaaaaagtgacaga 70379
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 ctcgacggcgggcaggctga 287 |||||||||||||||||||| Sbjct: 14117 ctcgacggcgggcaggctga 14098
>emb|BX571765.6| Zebrafish DNA sequence from clone DKEYP-77G7 in linkage group 23, complete sequence Length = 147933 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 tggaaaacaaaaagtgacag 41 |||||||||||||||||||| Sbjct: 24968 tggaaaacaaaaagtgacag 24987
>emb|AL772391.18| Zebrafish DNA sequence from clone CH211-35J18 in linkage group 23, complete sequence Length = 146397 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 tggaaaacaaaaagtgacag 41 |||||||||||||||||||| Sbjct: 32593 tggaaaacaaaaagtgacag 32574
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 ctctggaaaacaaaaagtga 38 |||||||||||||||||||| Sbjct: 299312 ctctggaaaacaaaaagtga 299293
>dbj|AK077739.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730577I22 product:inferred: myosin phosphatase, target subunit 1, full insert sequence Length = 1952 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaacaaaaagtgacagatg 44 |||||||||||||||||||| Sbjct: 366 aaaacaaaaagtgacagatg 347
>dbj|AK035230.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530003I05 product:myosin phosphatase, target subunit 1, full insert sequence Length = 4599 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaacaaaaagtgacagatg 44 |||||||||||||||||||| Sbjct: 2672 aaaacaaaaagtgacagatg 2653
>dbj|AK030460.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length enriched library, clone:5330415F10 product:myosin phosphatase, target subunit 1, full insert sequence Length = 3983 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aaaacaaaaagtgacagatg 44 |||||||||||||||||||| Sbjct: 2285 aaaacaaaaagtgacagatg 2266
>gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, complete sequence Length = 207157 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaaacaaaaagtgacagatg 44 |||||||||||||||||||| Sbjct: 176897 aaaacaaaaagtgacagatg 176916 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,408,829 Number of Sequences: 3902068 Number of extensions: 2408829 Number of successful extensions: 47891 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47767 Number of HSP's gapped (non-prelim): 124 length of query: 303 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 281 effective length of database: 17,147,199,772 effective search space: 4818363135932 effective search space used: 4818363135932 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)