ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK067951.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 6e-39
2emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster 42 1.0
3ref|XM_957472.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.0
4ref|XM_326157.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.0
5gb|AC139335.3| Mus musculus BAC clone RP23-376N11 from chromosom... 40 4.0
6gb|AC157897.2| Mus musculus chromosome 15, clone RP23-442E13, co... 40 4.0
7ref|XM_390635.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 4.0
8gb|AC103347.5| Mus musculus chromosome 15, clone RP24-377A20, co... 40 4.0
9gb|BC054076.1| Mus musculus protein phosphatase 1, regulatory (i... 40 4.0
10emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete ... 40 4.0
11gb|AC096642.2| Homo sapiens chromosome 1 clone RP11-392O17, comp... 40 4.0
12gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.0
13emb|BX571765.6| Zebrafish DNA sequence from clone DKEYP-77G7 in ... 40 4.0
14emb|AL772391.18| Zebrafish DNA sequence from clone CH211-35J18 i... 40 4.0
15gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 40 4.0
16dbj|AK077739.1| Mus musculus 8 days embryo whole body cDNA, RIKE... 40 4.0
17dbj|AK035230.1| Mus musculus adult male urinary bladder cDNA, RI... 40 4.0
18dbj|AK030460.1| Mus musculus adult male pituitary gland cDNA, RI... 40 4.0
19gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, compl... 40 4.0

>dbj|AK067951.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128O15, full
            insert sequence
          Length = 1368

 Score =  168 bits (85), Expect = 6e-39
 Identities = 169/197 (85%)
 Strand = Plus / Minus

                                                                        
Query: 107  tggaagatgctgctgacagagcactcgtcgtggaccccccaaatggtctcgccgaggagg 166
            ||||||||||| ||||||||||| |||||||| || | ||| ||||||||||||||||| 
Sbjct: 1175 tggaagatgctactgacagagcagtcgtcgtgaacgcgccagatggtctcgccgaggaga 1116

                                                                        
Query: 167  ttggcgacggaaagcacggtgagctgcgggaatcgctggtccggcggcaccggcacggtg 226
            ||||||||||| || ||||||||||| |||||   | |||   |  |||| || ||||||
Sbjct: 1115 ttggcgacggagaggacggtgagctgggggaaggtccggtggtgaagcacggggacggtg 1056

                                                                        
Query: 227  ttggtgatgatcacctcctgaaaaaggccgccggaaagcctctcgacggcgggcaggctg 286
            ||||||| |||||||||||| || ||||||| ||| ||||| |||||||||||| |||||
Sbjct: 1055 ttggtgacgatcacctcctggaagaggccgctggagagcctgtcgacggcgggcgggctg 996

                             
Query: 287  agcacggcgtgggtgct 303
            |||||||||||||||||
Sbjct: 995  agcacggcgtgggtgct 979



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>emb|AM113472.1| Micromonospora sp. ML1 thiocoraline gene cluster
          Length = 64650

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 213   gcaccggcacggtgttggtga 233
             |||||||||||||||||||||
Sbjct: 26771 gcaccggcacggtgttggtga 26751



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>ref|XM_957472.1| Neurospora crassa OR74A hypothetical protein (NCU06303.1) partial
           mRNA
          Length = 1128

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 cggaaagcctctcgacggcg 277
           ||||||||||||||||||||
Sbjct: 369 cggaaagcctctcgacggcg 388



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>ref|XM_326157.1| Neurospora crassa OR74A hypothetical protein (NCU06303.1) partial
           mRNA
          Length = 1128

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 258 cggaaagcctctcgacggcg 277
           ||||||||||||||||||||
Sbjct: 369 cggaaagcctctcgacggcg 388



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>gb|AC139335.3| Mus musculus BAC clone RP23-376N11 from chromosome 10, complete sequence
          Length = 195132

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     aaaacaaaaagtgacagatg 44
              ||||||||||||||||||||
Sbjct: 131109 aaaacaaaaagtgacagatg 131090



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>gb|AC157897.2| Mus musculus chromosome 15, clone RP23-442E13, complete sequence
          Length = 186421

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 45    ttgtaatgtagtaagatgatatgt 68
             ||||||||||||| ||||||||||
Sbjct: 87734 ttgtaatgtagtaggatgatatgt 87757



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>ref|XM_390635.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG10459.1)
           partial mRNA
          Length = 3285

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 153 tctcgccgaggaggttggcg 172
           ||||||||||||||||||||
Sbjct: 828 tctcgccgaggaggttggcg 847



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>gb|AC103347.5| Mus musculus chromosome 15, clone RP24-377A20, complete sequence
          Length = 132749

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     ttgtaatgtagtaagatgatatgt 68
              ||||||||||||| ||||||||||
Sbjct: 132453 ttgtaatgtagtaggatgatatgt 132476



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>gb|BC054076.1| Mus musculus protein phosphatase 1, regulatory (inhibitor) subunit
            12A, mRNA (cDNA clone IMAGE:5401263), partial cds
          Length = 5118

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   aaaacaaaaagtgacagatg 44
            ||||||||||||||||||||
Sbjct: 3140 aaaacaaaaagtgacagatg 3121



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>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29
          Length = 314100

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 205    gtccggcggcaccggcacggtgttggtg 232
              ||||| ||| ||||||||||||||||||
Sbjct: 238922 gtccgccgggaccggcacggtgttggtg 238949



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>gb|AC096642.2| Homo sapiens chromosome 1 clone RP11-392O17, complete sequence
          Length = 179048

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ggaaaacaaaaagtgacaga 42
             ||||||||||||||||||||
Sbjct: 70360 ggaaaacaaaaagtgacaga 70379



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   ctcgacggcgggcaggctga 287
             ||||||||||||||||||||
Sbjct: 14117 ctcgacggcgggcaggctga 14098



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>emb|BX571765.6| Zebrafish DNA sequence from clone DKEYP-77G7 in linkage group 23,
             complete sequence
          Length = 147933

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    tggaaaacaaaaagtgacag 41
             ||||||||||||||||||||
Sbjct: 24968 tggaaaacaaaaagtgacag 24987



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>emb|AL772391.18| Zebrafish DNA sequence from clone CH211-35J18 in linkage group 23,
             complete sequence
          Length = 146397

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    tggaaaacaaaaagtgacag 41
             ||||||||||||||||||||
Sbjct: 32593 tggaaaacaaaaagtgacag 32574



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     ctctggaaaacaaaaagtga 38
              ||||||||||||||||||||
Sbjct: 299312 ctctggaaaacaaaaagtga 299293



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>dbj|AK077739.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:5730577I22 product:inferred:
           myosin phosphatase, target subunit 1, full insert
           sequence
          Length = 1952

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  aaaacaaaaagtgacagatg 44
           ||||||||||||||||||||
Sbjct: 366 aaaacaaaaagtgacagatg 347



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>dbj|AK035230.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530003I05 product:myosin
            phosphatase, target subunit 1, full insert sequence
          Length = 4599

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   aaaacaaaaagtgacagatg 44
            ||||||||||||||||||||
Sbjct: 2672 aaaacaaaaagtgacagatg 2653



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>dbj|AK030460.1| Mus musculus adult male pituitary gland cDNA, RIKEN full-length
            enriched library, clone:5330415F10 product:myosin
            phosphatase, target subunit 1, full insert sequence
          Length = 3983

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   aaaacaaaaagtgacagatg 44
            ||||||||||||||||||||
Sbjct: 2285 aaaacaaaaagtgacagatg 2266



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>gb|AC147634.3| Mus musculus BAC clone RP23-305G22 from 10, complete sequence
          Length = 207157

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     aaaacaaaaagtgacagatg 44
              ||||||||||||||||||||
Sbjct: 176897 aaaacaaaaagtgacagatg 176916


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,408,829
Number of Sequences: 3902068
Number of extensions: 2408829
Number of successful extensions: 47891
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47767
Number of HSP's gapped (non-prelim): 124
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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