ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet65f04 |
|---|---|
| Clone Library Name | barley_pub |
>THN7_HORVU (Q42838) Thionin BTH7 precursor [Contains: Thionin BTH7; Acidic| protein] Length = 137 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/31 (87%), Positives = 29/31 (93%) Frame = -1 Query: 242 RRE*LKFDMGLCSNACARFCNDGEVIQSVEA 150 R + +KFDMGLCSNACARFCNDGEVIQSVEA Sbjct: 107 RGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137
>THN5_HORVU (P09617) Leaf-specific thionin precursor [Contains: Leaf-specific| thionin; Acidic protein] Length = 137 Score = 60.1 bits (144), Expect = 2e-09 Identities = 27/31 (87%), Positives = 29/31 (93%) Frame = -1 Query: 242 RRE*LKFDMGLCSNACARFCNDGEVIQSVEA 150 R + +KFDMGLCSNACARFCNDGEVIQSVEA Sbjct: 107 RGQEMKFDMGLCSNACARFCNDGEVIQSVEA 137
>THNX_HORVU (Q8H0Q5) Probable leaf thionin precursor [Contains: Probable leaf| thionin; Acidic protein] Length = 137 Score = 58.9 bits (141), Expect = 5e-09 Identities = 26/31 (83%), Positives = 29/31 (93%) Frame = -1 Query: 242 RRE*LKFDMGLCSNACARFCNDGEVIQSVEA 150 R + +KFDMGLCSNACARFCNDG+VIQSVEA Sbjct: 107 RGQEMKFDMGLCSNACARFCNDGDVIQSVEA 137
>THN6_HORVU (P09618) Leaf-specific thionin BTH6 precursor [Contains:| Leaf-specific thionin BTH6; Acidic protein] Length = 137 Score = 57.8 bits (138), Expect = 1e-08 Identities = 26/31 (83%), Positives = 28/31 (90%) Frame = -1 Query: 242 RRE*LKFDMGLCSNACARFCNDGEVIQSVEA 150 R + +KFDMGLCSNACARFCNDG VIQSVEA Sbjct: 107 RGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137
>THN3_HORVU (P08772) Leaf-specific thionin DB4 precursor [Contains:| Leaf-specific thionin DB4; Acidic protein] Length = 137 Score = 57.8 bits (138), Expect = 1e-08 Identities = 26/31 (83%), Positives = 28/31 (90%) Frame = -1 Query: 242 RRE*LKFDMGLCSNACARFCNDGEVIQSVEA 150 R + +KFDMGLCSNACARFCNDG VIQSVEA Sbjct: 107 RGQEMKFDMGLCSNACARFCNDGAVIQSVEA 137
>LTBP2_RAT (O35806) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1764 Score = 37.7 bits (86), Expect = 0.012 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = -1 Query: 185 CNDGEVIQSVEA*SCLLGHDFYGQGRFVIFCSTILIPSPDRSKCIILDKSSMDILCDTPQ 6 C D + + E CL GH +G F C T P+PD +C+ +D+ + D +C Sbjct: 1206 CQDVDECATTEP--CLGGHCVNTEGSFNCLCETGFQPAPDSGECVDIDECANDTVCGNHG 1263 Query: 5 F 3 F Sbjct: 1264 F 1264
>RECO_BACCR (Q818G3) DNA repair protein recO (Recombination protein O)| Length = 248 Score = 30.8 bits (68), Expect = 1.5 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 6/102 (5%) Frame = +2 Query: 53 YIC--FDLVMVSRLLNRK*QNDLGHRNHAQEGMIRLQQTE*LHHHYRNGHMRCCRV---- 214 Y+C D ++S + K LG R + I Q+T+ + R G C R Sbjct: 121 YMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETDFVAFSVREGGFLCSRHAEQD 180 Query: 215 PCRISVTPAVYPRLVEFLHFDIQSTGQKSHCVSIREDHRNAL 340 P RI V AV+ L F HFD+ G S S ++ R L Sbjct: 181 PYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVL 222
>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1821 Score = 30.0 bits (66), Expect = 2.5 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -1 Query: 143 CLLGHDFYGQGRFVIFCSTILIPSPDRSKCIILDK 39 C+ GH +G F C T PSP+ +C+ +D+ Sbjct: 1228 CVGGHCVNTEGSFNCLCETGFQPSPESGECVDIDE 1262
>YJEP_ECOLI (P39285) Hypothetical mscS family protein yjeP precursor| Length = 1107 Score = 28.5 bits (62), Expect = 7.4 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +2 Query: 5 IVVYHIIYPWNFYLR*YICFDLVMVSR---LLNRK*QNDLGHRNHAQEGMIRLQQTE 166 +VVYH+I W R + FD R L R + H + + EG I + ++E Sbjct: 712 LVVYHVIRRWMLIQRRRLAFDRAKHRRAEMLAQRARGEEEAHHHSSPEGAIEVDESE 768
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 28.1 bits (61), Expect = 9.7 Identities = 13/40 (32%), Positives = 17/40 (42%) Frame = -1 Query: 377 WYGQGESDCLIKTKHCDGPRGC*RNVISAQCSECQSEEIQ 258 W CL T CDG C + CS CQ +E++ Sbjct: 622 WECPSNKQCLKHTVICDGFPDCPDYMDEKNCSFCQDDELE 661
>SORL_RABIT (Q95209) Sortilin-related receptor precursor (Sorting protein-related| receptor containing LDLR class A repeats) (SorLA) (SorLA-1) (Low-density lipoprotein receptor relative with 11 ligand-binding repeats) (LDLR relative with 11 ligand-binding Length = 2213 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = -1 Query: 434 GPGIALRELSPSMKQSTQNWYGQGESDCLIKTKHCDGPRGC 312 G L +P+ N+Y G C+I T CDG R C Sbjct: 1403 GDSHVLPSTTPAPSTCLPNYYRCGGGACVIDTWVCDGYRDC 1443
>ATT_APLFA (Q7M459) Attractin| Length = 58 Score = 28.1 bits (61), Expect = 9.7 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%) Frame = -1 Query: 371 GQGESDCLIKTKHCDGPRGC*RNVISAQC-----SECQSEEIQPSAG 246 G S C ++ ++CD GC N I +C CQ++E + ++G Sbjct: 7 GNITSQCEMQHQNCDDANGC--NTIIEECKTSMVERCQNQEFESASG 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,544,928 Number of Sequences: 219361 Number of extensions: 1289862 Number of successful extensions: 3095 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3093 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2511994855 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
