ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet65f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT018226.1| Zea mays clone EL01N0561F09.c mRNA sequence 226 5e-56
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 157 3e-35
3gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare str... 157 3e-35
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
5dbj|AK104137.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
6dbj|AK098999.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
7dbj|AK072141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
8dbj|AK070779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
9dbj|AK059557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 3e-35
10gb|AF095708.1|AF095708 Oryza sativa clone LS101 50S ribosomal pr... 149 9e-33
11gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 56 1e-04
12gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 54 4e-04
13dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 50 0.006
14emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 48 0.023
15dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 46 0.092
16gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, comple... 46 0.092
17gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complet... 46 0.092
18emb|Z99129.1|HS425C14 Human DNA sequence from clone RP3-425C14 o... 44 0.36
19gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.4
20gb|AC108835.8| Mus musculus chromosome 6, clone RP23-274E24, com... 42 1.4
21gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 1.4
22gb|AE016753.1| Mus musculus chromosome 10 high-growth region, se... 42 1.4
23dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.4
24gb|AC153366.7| Mus musculus 10 BAC RP23-243B24 (Roswell Park Can... 42 1.4
25gb|AF023909.1|AF023909 Rhodobacter sphaeroides nitrogen regulato... 42 1.4
26ref|XM_482867.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
27ref|XM_482863.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.6
28gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL... 40 5.6
29gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, com... 40 5.6
30gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 5.6
31gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's ... 40 5.6
32gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, com... 40 5.6
33gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, com... 40 5.6
34gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosom... 40 5.6
35gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 5.6
36gb|CP000088.1| Thermobifida fusca YX, complete genome 40 5.6
37emb|X17524.1|MLSPCOPER M.luteus DNA for spectinomycin (spc) operon 40 5.6
38gb|AY124963.1| Tomato spotted wilt virus isolate TSWV-FG31 non-s... 40 5.6
39emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.6
40dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 5.6
41gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.6
42gb|AC158898.7| Mus musculus chromosome 8, clone RP23-153P23, com... 40 5.6
43gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, com... 40 5.6
44gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.6
45dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
46gb|AC124768.4| Homo sapiens BAC clone RP11-1188G23 from 2, compl... 40 5.6
47gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, co... 40 5.6
48gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome 40 5.6
49dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 5.6
50dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
51dbj|AK121810.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
52dbj|AK102363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.6
53emb|X15819.1|OSNIA112 Oryza sativa partial nia1 gene for nitrate... 40 5.6
54gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 5.6
55emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on ch... 40 5.6
56dbj|AB016243.1| Homo sapiens gene for regulatory factor 2 of sod... 40 5.6 
>gb|BT018226.1| Zea mays clone EL01N0561F09.c mRNA sequence
          Length = 923

 Score =  226 bits (114), Expect = 5e-56
 Identities = 222/256 (86%), Gaps = 4/256 (1%)
 Strand = Plus / Minus

                                                                       
Query: 170 ccttcccct-gcccttgctcatgaagtggtggcgcttcaacctcttcttcttgaactg-- 226
           ||||||||| ||||||||||| ||||||| ||||||||||||||||||||  || |    
Sbjct: 730 ccttccccttgcccttgctcaggaagtgggggcgcttcaacctcttcttccggatcacca 671

                                                                       
Query: 227 -gtcagacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcct 285
            ||| | |||||||||||| | ||| ||||||||||||||  | | ||||||   |||||
Sbjct: 670 cgtcggtcttgatgttctccgagaacggcatgccgaggaggaccaccagcctgaacgcct 611

                                                                       
Query: 286 cgttgtcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgccca 345
           ||||||| ||||||||| ||||||||||||  |||||||| ||||||||||| |||||||
Sbjct: 610 cgttgtccgtcttggcgctggtgacgatggacacgtccatgccgttcttcttcccgccca 551

                                                                       
Query: 346 cctcgtaggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgt 405
           ||||||| |||||||||||||||||||||||||| |||||||| | | ||||||||||||
Sbjct: 550 cctcgtacgggatctccgggaacacgccctggtcacggaggccaaggctgtagttgccgt 491

                           
Query: 406 gcccgtcgaagctgtt 421
           ||||||||||||||||
Sbjct: 490 gcccgtcgaagctgtt 475
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Plus

                                                                           
Query: 231     gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
               |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 1413671 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 1413730

                                                                           
Query: 291     tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
               |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 1413731 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 1413790

                                                                           
Query: 351     taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
               || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 1413791 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 1413850

                          
Query: 411     tcgaagctgtt 421
               || ||||||||
Sbjct: 1413851 tcaaagctgtt 1413861



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                               
Query: 171     cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
               ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413608 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 1413655
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>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11,
             from chromosome 3, complete sequence
          Length = 147806

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Plus

                                                                         
Query: 231   gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
             |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 75174 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 75233

                                                                         
Query: 291   tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
             |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 75234 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 75293

                                                                         
Query: 351   taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
             || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 75294 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 75353

                        
Query: 411   tcgaagctgtt 421
             || ||||||||
Sbjct: 75354 tcaaagctgtt 75364



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                             
Query: 171   cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
             ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75111 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 75158
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Plus

                                                                           
Query: 231     gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
               |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 1413669 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 1413728

                                                                           
Query: 291     tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
               |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 1413729 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 1413788

                                                                           
Query: 351     taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
               || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 1413789 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 1413848

                          
Query: 411     tcgaagctgtt 421
               || ||||||||
Sbjct: 1413849 tcaaagctgtt 1413859



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                               
Query: 171     cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
               ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1413606 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 1413653
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>dbj|AK104137.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-H07, full
           insert sequence
          Length = 1009

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                       
Query: 231 gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
           |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 778 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 719

                                                                       
Query: 291 tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
           |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 718 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 659

                                                                       
Query: 351 taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
           || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 658 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 599

                      
Query: 411 tcgaagctgtt 421
           || ||||||||
Sbjct: 598 tcaaagctgtt 588



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 794
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>dbj|AK098999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099N22, full
           insert sequence
          Length = 1011

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                       
Query: 231 gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
           |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 785 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 726

                                                                       
Query: 291 tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
           |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 725 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 666

                                                                       
Query: 351 taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
           || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 665 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 606

                      
Query: 411 tcgaagctgtt 421
           || ||||||||
Sbjct: 605 tcaaagctgtt 595



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 801
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>dbj|AK072141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122I07, full
           insert sequence
          Length = 2916

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Plus

                                                                       
Query: 231 gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
           |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 329 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 388

                                                                       
Query: 291 tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
           |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 389 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 448

                                                                       
Query: 351 taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
           || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 449 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 508

                      
Query: 411 tcgaagctgtt 421
           || ||||||||
Sbjct: 509 tcaaagctgtt 519



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                           
Query: 171 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 313
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>dbj|AK070779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023072F09, full
           insert sequence
          Length = 1044

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                       
Query: 231 gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
           |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 807 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 748

                                                                       
Query: 291 tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
           |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 747 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 688

                                                                       
Query: 351 taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
           || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 687 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 628

                      
Query: 411 tcgaagctgtt 421
           || ||||||||
Sbjct: 627 tcaaagctgtt 617



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 823
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>dbj|AK059557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G09, full
           insert sequence
          Length = 1013

 Score =  157 bits (79), Expect = 3e-35
 Identities = 163/191 (85%)
 Strand = Plus / Minus

                                                                       
Query: 231 gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
           |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 782 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 723

                                                                       
Query: 291 tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
           |||||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 722 tcggtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 663

                                                                       
Query: 351 taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
           || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 662 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 603

                      
Query: 411 tcgaagctgtt 421
           || ||||||||
Sbjct: 602 tcaaagctgtt 592



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 798
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>gb|AF095708.1|AF095708 Oryza sativa clone LS101 50S ribosomal protein L5 (rpl5) mRNA,
           nuclear gene encoding chloroplast protein, partial cds
          Length = 1025

 Score =  149 bits (75), Expect = 9e-33
 Identities = 162/191 (84%)
 Strand = Plus / Minus

                                                                       
Query: 231 gacttgatgttctcggcgaatggcatgccgaggagtgcaagcagcctttgcgcctcgttg 290
           |||||||||| ||| ||||| |||||||| ||||| |  ||||||||  | |||||||||
Sbjct: 774 gacttgatgtgctccgcgaacggcatgccaaggagggtgagcagcctgagagcctcgttg 715

                                                                       
Query: 291 tcggtcttggcggtggtgacgatggtgacgtccataccgttcttcttgccgcccacctcg 350
           || ||||| |||||||||||||||  ||||||||| || |||||||| || || ||||||
Sbjct: 714 tccgtcttcgcggtggtgacgatgcagacgtccattccattcttcttcccaccgacctcg 655

                                                                       
Query: 351 taggggatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccg 410
           || ||||||||||||||||||||||| || || ||||| |||||| ||||||| || || 
Sbjct: 654 tacgggatctccgggaacacgccctgatcacgaaggcctatggtgaagttgccatggcca 595

                      
Query: 411 tcgaagctgtt 421
           || ||||||||
Sbjct: 594 tcaaagctgtt 584



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 48/48 (100%)
 Strand = Plus / Minus

                                                           
Query: 171 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 218
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 cttcccctgcccttgctcatgaagtggtggcgcttcaacctcttcttc 790
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                  
Query: 290    gtcggtcttggcggtggtgacgatggtgacgtccat 325
              |||||||||||||||||| |||||||||| ||||||
Sbjct: 318768 gtcggtcttggcggtggtcacgatggtgatgtccat 318733
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                              
Query: 288     ttgtcggtcttggcggtggtgacgatggtga 318
               ||||||||| |||||||||||||||||||||
Sbjct: 1399346 ttgtcggtcgtggcggtggtgacgatggtga 1399316
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 40/45 (88%)
 Strand = Plus / Plus

                                                            
Query: 281     cgcctcgttgtcggtcttggcggtggtgacgatggtgacgtccat 325
               |||||| | ||||||||||||||| ||||||||| | ||||||||
Sbjct: 3269086 cgcctcttcgtcggtcttggcggtcgtgacgatgatcacgtccat 3269130
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 384     aggccgatggtgtagttgccgtgcccgtcgaa 415
               ||||||| ||||||||||||||| ||||||||
Sbjct: 2096340 aggccgaaggtgtagttgccgtggccgtcgaa 2096371
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                      
Query: 378     tcgcggaggccgatggtgtagttgccgtgcccgtcgaag 416
               ||||| ||||||| ||||||||||||| | |||||||||
Sbjct: 4113721 tcgcgcaggccgagggtgtagttgccgcggccgtcgaag 4113759
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>gb|AC129323.6| Mus musculus BAC clone RP23-237M15 from 9, complete sequence
          Length = 170293

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 83     aaatatctaaaccaaactatgcaaaag 109
              ||||||||||| |||||||||||||||
Sbjct: 147126 aaatatctaaaacaaactatgcaaaag 147152
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>gb|AC127309.4| Mus musculus BAC clone RP23-296L9 from 9, complete sequence
          Length = 188083

 Score = 46.1 bits (23), Expect = 0.092
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 83    aaatatctaaaccaaactatgcaaaag 109
             ||||||||||| |||||||||||||||
Sbjct: 13223 aaatatctaaaacaaactatgcaaaag 13249
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>emb|Z99129.1|HS425C14 Human DNA sequence from clone RP3-425C14 on chromosome 6q22 Contains the
              3' end of the HSF2 gene for  Heat Shock Transcription
              Factor 2 and the 3' end of a novel gene for KIAA1253
              protein (similar to tumor differentially expressed TDE1),
              complete sequence
          Length = 160203

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 45     aacatgaacagcaagtaataag 66
              ||||||||||||||||||||||
Sbjct: 119330 aacatgaacagcaagtaataag 119351
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 288     ttgtcggtcttggcggtggtg 308
               |||||||||||||||||||||
Sbjct: 2637964 ttgtcggtcttggcggtggtg 2637984
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>gb|AC108835.8| Mus musculus chromosome 6, clone RP23-274E24, complete sequence
          Length = 173365

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 51    aacagcaagtaataagagaca 71
             |||||||||||||||||||||
Sbjct: 55835 aacagcaagtaataagagaca 55855
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 51/61 (83%)
 Strand = Plus / Plus

                                                                           
Query: 356     gatctccgggaacacgccctggtcgcggaggccgatggtgtagttgccgtgcccgtcgaa 415
               |||||||||||| | |  ||| ||||||| |||||  ||||||||||| | |||||||||
Sbjct: 2180434 gatctccgggaagatgatctgctcgcggacgccgagcgtgtagttgcccttcccgtcgaa 2180493

                
Query: 416     g 416
               |
Sbjct: 2180494 g 2180494
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>gb|AE016753.1| Mus musculus chromosome 10 high-growth region, section 1 of 2 of the
              complete sequence
          Length = 350029

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 122    caaagtgggaagcaacaaagg 142
              |||||||||||||||||||||
Sbjct: 215842 caaagtgggaagcaacaaagg 215862
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                                
Query: 281     cgcctcgttgtcggtcttggcggtggtgacgatggtgacgtccataccg 329
               |||||| | |||||||||||| ||||||  || ||||| ||||||||||
Sbjct: 5930434 cgcctcttcgtcggtcttggccgtggtgcagacggtgatgtccataccg 5930482
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>gb|AC153366.7| Mus musculus 10 BAC RP23-243B24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 184707

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 122    caaagtgggaagcaacaaagg 142
              |||||||||||||||||||||
Sbjct: 112057 caaagtgggaagcaacaaagg 112037
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>gb|AF023909.1|AF023909 Rhodobacter sphaeroides nitrogen regulatory protein GlnK (glnK)
           gene, complete cds; and putative ammonia transporter
           (amtB) gene, partial cds
          Length = 1142

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 288 ttgtcggtcttggcggtggtg 308
           |||||||||||||||||||||
Sbjct: 841 ttgtcggtcttggcggtggtg 821
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>ref|XM_482867.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2751

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 gttgtcggtcttggcggtggtgacgatg 314
           |||||||| || ||||||||||||||||
Sbjct: 972 gttgtcggactcggcggtggtgacgatg 945
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>ref|XM_482863.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3147

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 287  gttgtcggtcttggcggtggtgacgatg 314
            |||||||| || ||||||||||||||||
Sbjct: 1092 gttgtcggactcggcggtggtgacgatg 1065
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>gb|AC005600.1| Homo sapiens chromosome 16, P1 clone 109-9G (LANL), complete sequence
          Length = 79586

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  tccttcccctgcccttgctc 188
            ||||||||||||||||||||
Sbjct: 7188 tccttcccctgcccttgctc 7207
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>gb|AC162522.6| Mus musculus chromosome 8, clone RP23-314A15, complete sequence
          Length = 187888

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    ttgacaaagtgggaagcaac 137
              ||||||||||||||||||||
Sbjct: 180956 ttgacaaagtgggaagcaac 180975
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                       
Query: 290     gtcggtcttggcggtggtgacgatggtgacgtccataccg 329
               |||| ||||||||||||| ||||  |||| ||||||||||
Sbjct: 2077203 gtcgttcttggcggtggtcacgaccgtgatgtccataccg 2077242
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>gb|AC096338.17| Rattus norvegicus X BAC CH230-95I19 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 236662

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ttcccctgcccttgctcatg 191
              ||||||||||||||||||||
Sbjct: 235292 ttcccctgcccttgctcatg 235273
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>gb|AC022062.10| Mus musculus chromosome 5, clone RP23-57P23, complete sequence
          Length = 235363

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    tcacttccttcccctgccct 183
              ||||||||||||||||||||
Sbjct: 160671 tcacttccttcccctgccct 160690
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>gb|AC093513.3| Homo sapiens chromosome 16 clone CTD-2517G10, complete sequence
          Length = 72483

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   tccttcccctgcccttgctc 188
             ||||||||||||||||||||
Sbjct: 60672 tccttcccctgcccttgctc 60653
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>gb|AC132386.3| Mus musculus BAC clone RP23-438O22 from chromosome 5, complete sequence
          Length = 170182

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tcacttccttcccctgccct 183
              ||||||||||||||||||||
Sbjct: 154940 tcacttccttcccctgccct 154921
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     cggtggtgacgatggtgacg 320
               ||||||||||||||||||||
Sbjct: 2351553 cggtggtgacgatggtgacg 2351534
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 346     cctcgtaggggatctccggg 365
               ||||||||||||||||||||
Sbjct: 1604286 cctcgtaggggatctccggg 1604267
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>emb|X17524.1|MLSPCOPER M.luteus DNA for spectinomycin (spc) operon
          Length = 6858

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 384  aggccgatggtgtagttgccgtgcccgtcgaa 415
            ||||||| ||||||||||||||  ||||||||
Sbjct: 1489 aggccgaaggtgtagttgccgttgccgtcgaa 1458
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>gb|AY124963.1| Tomato spotted wilt virus isolate TSWV-FG31 non-structural protein
           (NSm) mRNA, partial cds
          Length = 688

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 203 cttcaacctcttcttcttgaactg 226
           |||||||||||||||||| |||||
Sbjct: 679 cttcaacctcttcttcttcaactg 656
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>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    gtggtgacgatggtgacgtc 322
              ||||||||||||||||||||
Sbjct: 100611 gtggtgacgatggtgacgtc 100630
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 334     tcttgccgcccacctcgtag 353
               ||||||||||||||||||||
Sbjct: 4241540 tcttgccgcccacctcgtag 4241521
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 288     ttgtcggtcttggcggtggt 307
               ||||||||||||||||||||
Sbjct: 4161579 ttgtcggtcttggcggtggt 4161560
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>gb|AC158898.7| Mus musculus chromosome 8, clone RP23-153P23, complete sequence
          Length = 212598

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ttgacaaagtgggaagcaac 137
              ||||||||||||||||||||
Sbjct: 164114 ttgacaaagtgggaagcaac 164095
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>gb|AC158955.2| Mus musculus chromosome 15, clone RP23-22C17, complete sequence
          Length = 256999

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    ttccttcccctgcccttgct 187
              ||||||||||||||||||||
Sbjct: 199384 ttccttcccctgcccttgct 199403
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 301     cggtggtgacgatggtgacg 320
               ||||||||||||||||||||
Sbjct: 3825539 cggtggtgacgatggtgacg 3825558
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 287      gttgtcggtcttggcggtggtgacgatg 314
                |||||||| || ||||||||||||||||
Sbjct: 23047363 gttgtcggactcggcggtggtgacgatg 23047390



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 287      gttgtcggtcttggcggtggtgacgatg 314
                |||||||| || ||||||||||||||||
Sbjct: 23027079 gttgtcggactcggcggtggtgacgatg 23027052
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>gb|AC124768.4| Homo sapiens BAC clone RP11-1188G23 from 2, complete sequence
          Length = 95291

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   gcttgatcttcacttccttc 174
             ||||||||||||||||||||
Sbjct: 13944 gcttgatcttcacttccttc 13925
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>gb|AC120373.10| Mus musculus chromosome 15, clone RP24-512O2, complete sequence
          Length = 159741

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 168    ttccttcccctgcccttgct 187
              ||||||||||||||||||||
Sbjct: 120060 ttccttcccctgcccttgct 120041
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>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome
          Length = 3179300

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 216    ttcttgaactggtcagacttgatgttct 243
              ||||||| ||||||| ||||||||||||
Sbjct: 979145 ttcttgatctggtcatacttgatgttct 979118
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 291     tcggtcttggcggtggtgacgatg 314
               ||||| ||||||||||||||||||
Sbjct: 1129386 tcggtgttggcggtggtgacgatg 1129409
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>dbj|AP004585.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0470B03
          Length = 163371

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 287    gttgtcggtcttggcggtggtgacgatg 314
              |||||||| || ||||||||||||||||
Sbjct: 107091 gttgtcggactcggcggtggtgacgatg 107118



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 287   gttgtcggtcttggcggtggtgacgatg 314
             |||||||| || ||||||||||||||||
Sbjct: 86807 gttgtcggactcggcggtggtgacgatg 86780
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>dbj|AK121810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033098A20, full
            insert sequence
          Length = 3147

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 287  gttgtcggtcttggcggtggtgacgatg 314
            |||||||| || ||||||||||||||||
Sbjct: 1092 gttgtcggactcggcggtggtgacgatg 1065
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>dbj|AK102363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091J17, full
           insert sequence
          Length = 2361

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 287 gttgtcggtcttggcggtggtgacgatg 314
           |||||||| || ||||||||||||||||
Sbjct: 349 gttgtcggactcggcggtggtgacgatg 322
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>emb|X15819.1|OSNIA112 Oryza sativa partial nia1 gene for nitrate reductase apoenzyme, exons
            1-2 and joined CDS
          Length = 1700

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 287  gttgtcggtcttggcggtggtgacgatg 314
            |||||||| || ||||||||||||||||
Sbjct: 1259 gttgtcggactcggcggtggtgacgatg 1232
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 368     cacgccctggtcgcggaggc 387
               ||||||||||||||||||||
Sbjct: 2825411 cacgccctggtcgcggaggc 2825392
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>emb|AL627236.11| Mouse DNA sequence from clone RP23-384G12 on chromosome 4, complete
             sequence
          Length = 201752

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tcacttccttcccctgccct 183
             ||||||||||||||||||||
Sbjct: 95908 tcacttccttcccctgccct 95889
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>dbj|AB016243.1| Homo sapiens gene for regulatory factor 2 of sodium/hydrogen
            exchanger isoform A3, complete cds
          Length = 14728

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 169  tccttcccctgcccttgctc 188
            ||||||||||||||||||||
Sbjct: 5409 tccttcccctgcccttgctc 5428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,757,515
Number of Sequences: 3902068
Number of extensions: 3757515
Number of successful extensions: 79638
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78850
Number of HSP's gapped (non-prelim): 787
length of query: 421
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 399
effective length of database: 17,147,199,772
effective search space: 6841732709028
effective search space used: 6841732709028
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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